Clone AT26616 Report

Search the DGRC for AT26616

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:266
Well:16
Vector:pOTB7
Associated Gene/TranscriptCG9863-RB
Protein status:AT26616.pep: gold
Preliminary Size:1377
Sequenced Size:1187

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9863 2002-01-01 Sim4 clustering to Release 2
CG9863 2002-02-22 Blastp of sequenced clone
CG9863 2003-01-01 Sim4 clustering to Release 3
CG9863 2008-04-29 Release 5.5 accounting
CG9863 2008-08-15 Release 5.9 accounting
CG9863 2008-12-18 5.12 accounting

Clone Sequence Records

AT26616.complete Sequence

1187 bp (1187 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089449

> AT26616.complete
ATTATTTAGATAACAGTGAATATGTTTTGGAATATGTTTTCGAGGTTCCT
CCGTGGTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCT
GCAATTCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTC
ACAGGAAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGG
CCTGCGACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGG
CCTTCGACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACC
ATGATCGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTG
CACGGAGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTC
CCTACTGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTT
CCCGTGAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGT
GGACATGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGC
AGGAAAAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCC
CAGATCGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGA
AATAGTGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGG
ATATAGAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAG
GTGCAGCGCTTCAAGCTGATCAGCTTCAGTCCGAAAACACTGAACCTTCG
CGTTATTGACTTTCTGAAACCGGTTCGACAGAAGTAGCCCACAAATTCTC
CGTTCCGAAGGTGTTGTCATTGGGGCACTCGAGTAATTTCAGTCACGTGC
CGTTCTCCGGTTCATCGATCCCTCGCATTGGCATTACGTTAAACCCACTT
TGTCAGCGATCTCTATCCACCGATCGTGGCGCGACTCCGCTTCGATGTGA
ACTGATCCGCTGGGAGGGTTACCTGGTATATTTATGGCTTGGACAGGTGT
GTCGAGAGGCTTACCAACACTGTGATTTTCAAATTGCTGTGAGTTTTTCA
ATAAATGTTTGTCAGTTTGTCTTACCATAAATGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT26616.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863.a 1143 CG9863.a 1..1136 1..1136 5650 99.8 Plus
CG9863-RB 1143 CG9863-RB 1..1136 1..1136 5650 99.8 Plus
CG3502-RB 3175 CG3502-RB 1..341 1003..663 1705 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19232936..19234087 1..1134 5365 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:59:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23346635..23347770 1..1136 5650 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23347834..23348969 1..1136 5650 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 19:50:00 has no hits.

AT26616.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:12 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19232936..19233058 1..123 99 <- Plus
chr2R 19233075..19234087 124..1134 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:23:21 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..804 34..837 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:05 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..804 34..837 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:01 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..804 34..837 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:25 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..804 34..837 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:08 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..804 34..837 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:05:56 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..1134 1..1134 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:05 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..1134 1..1134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:01 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..1134 1..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:25 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..1134 1..1134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:08 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..1134 1..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:12 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23346635..23347768 1..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:12 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23346635..23347768 1..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:12 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23346635..23347768 1..1134 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:01 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19234158..19235291 1..1134 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:45 Download gff for AT26616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23347852..23348985 1..1134 99   Plus

AT26616.pep Sequence

Translation from 21 to 836

> AT26616.pep
MFWNMFSRFLRGSSTSQITCLVRGGGCNSNTSQSQPHRNVSLFTGRQPHW
KLRVMQFLSGLRHRYCLWRLRRLLGVAFDEGGFHEGTRQAAVTMIDAVRQ
ADWPCIRSCCTERGSADIYGLSQMRSPYCSLVRFQKEHLRHALPVRVVRR
WIDGRYYVMVDMLFVGLRNLLDLGTEQEKEEMLQRIQSVLVNSQIDDKFE
PSNCRLAIAEIVLTFSMELGDPQDPRDIESEDQDSGWLVDSYKVQRFKLI
SFSPKTLNLRVIDFLKPVRQK*

AT26616.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11567-PA 271 GF11567-PA 1..271 5..268 820 61.2 Plus
Dana\GF11565-PA 336 GF11565-PA 71..224 64..215 216 36.4 Plus
Dana\GF13300-PA 311 GF13300-PA 108..300 77..271 147 24.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22840-PA 221 GG22840-PA 1..221 55..271 1050 90 Plus
Dere\GG22834-PA 345 GG22834-PA 89..242 64..215 214 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22732-PA 199 GH22732-PA 1..199 67..268 469 49.3 Plus
Dgri\GH13922-PA 134 GH13922-PA 1..134 130..268 277 45 Plus
Dgri\GH22726-PA 251 GH22726-PA 25..246 64..255 234 30.6 Plus
Dgri\GH22570-PA 266 GH22570-PA 40..261 64..255 234 30.6 Plus
Dgri\GH23048-PA 275 GH23048-PA 88..265 64..244 172 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PB 267 CG9863-PB 1..267 5..271 1407 100 Plus
CG3092-PA 347 CG3092-PA 91..244 64..215 206 35.7 Plus
CG30412-PC 295 CG30412-PC 77..272 58..254 169 29.2 Plus
CG30412-PB 301 CG30412-PB 83..278 58..254 169 29.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18516-PA 262 GI18516-PA 31..262 34..268 540 46.4 Plus
Dmoj\GI18512-PA 315 GI18512-PA 80..308 64..255 224 29.4 Plus
Dmoj\GI21117-PA 261 GI21117-PA 65..259 57..254 175 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10790-PA 238 GL10790-PA 53..237 61..267 226 34.1 Plus
Dper\GL10783-PA 319 GL10783-PA 63..233 64..233 210 32.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22081-PA 238 GA22081-PA 53..237 61..267 227 34.6 Plus
Dpse\GA15920-PA 385 GA15920-PA 129..299 64..233 207 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15997-PA 273 GM15997-PA 1..273 5..271 1335 93 Plus
Dsec\GM15992-PA 347 GM15992-PA 91..244 64..215 215 35.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11750-PA 217 GD11750-PA 1..217 55..271 1113 96.3 Plus
Dsim\GD11745-PA 349 GD11745-PA 91..244 64..215 214 35.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21378-PA 259 GJ21378-PA 34..259 37..268 551 48.7 Plus
Dvir\GJ21373-PA 307 GJ21373-PA 68..300 64..255 227 30.3 Plus
Dvir\GJ20966-PA 310 GJ20966-PA 101..285 64..254 164 26.8 Plus
Dvir\GJ20965-PA 388 GJ20965-PA 64..201 57..200 149 28.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19559-PA 272 GK19559-PA 1..272 5..268 561 44.2 Plus
Dwil\GK19556-PA 475 GK19556-PA 62..215 64..215 209 35.6 Plus
Dwil\GK19582-PA 256 GK19582-PA 56..237 61..255 173 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14276-PA 221 GE14276-PA 1..221 55..271 1026 87.8 Plus
Dyak\GE14270-PA 348 GE14270-PA 90..243 64..215 208 35.1 Plus

AT26616.hyp Sequence

Translation from 21 to 836

> AT26616.hyp
MFWNMFSRFLRGSSTSQITCLVRGGGCNSNTSQSQPHRNVSLFTGRQPHW
KLRVMQFLSGLRHRYCLWRLRRLLGVAFDEGGFHEGTRQAAVTMIDAVRQ
ADWPCIRSCCTERGSADIYGLSQMRSPYCSLVRFQKEHLRHALPVRVVRR
WIDGRYYVMVDMLFVGLRNLLDLGTEQEKEEMLQRIQSVLVNSQIDDKFE
PSNCRLAIAEIVLTFSMELGDPQDPRDIESEDQDSGWLVDSYKVQRFKLI
SFSPKTLNLRVIDFLKPVRQK*

AT26616.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PB 267 CG9863-PB 1..267 5..271 1407 100 Plus
CG3092-PA 347 CG3092-PA 91..244 64..215 206 35.7 Plus
CG30412-PC 295 CG30412-PC 77..272 58..254 169 29.2 Plus
CG30412-PB 301 CG30412-PB 83..278 58..254 169 29.2 Plus