Clone AT26658 Report

Search the DGRC for AT26658

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:266
Well:58
Vector:pOTB7
Associated Gene/TranscriptPif2-RA
Protein status:AT26658.pep: gold
Sequenced Size:844

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2336 2002-01-01 Sim4 clustering to Release 2
CG31483 2002-01-18 Blastp of sequenced clone
CG31483 2003-01-01 Sim4 clustering to Release 3
Pif2 2008-04-29 Release 5.5 accounting
Pif2 2008-08-15 Release 5.9 accounting
Pif2 2008-12-18 5.12 accounting

Clone Sequence Records

AT26658.complete Sequence

844 bp (844 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089451

> AT26658.complete
AAAACTCAAACGGAAATGTCAGCAAAAACACATTTTGTAGGTAAATAGTC
ACACGGACACACACAAATCAAATTCAAGCCCCGGGCTCGAGATCTCTGAC
GGGTTCAAGCACGAATCGAAGATGTGCAGCCCCTGCTGTGGATCCTGCTG
CGGACCTTGCTGCTCCCCCTGCTGCAGCCCTTGTTGTCCACCGTGCTGCA
ATGACTGCTGCGGGTCCTGCTGCAGTCCGTGTTGCGGACCCTGTTGCAGC
CCCTGCTGCGGACCCTGCTGCAGCCCCTGCTGCAGTCCTTGCTGCACCCC
CTGTTGCACCCCTTGCTGCACGCCGTGCTGCAAGTGTTGCACACCCTGCT
GCGTGCCGTGTTGCACACCCTGCTGCACCCCCTGCTGCACTCCCTGTTGC
ACCCCTTGCTGCAGTCCGTGCTGCGGTCCGTGCTGCAGCCCCTGCTGCTC
TCCTTGCGGAGGGTCAAAGTGCAAGTGATCCACGGCAGCGAATACGGATT
CGTTTTCGGAGGCAGGAGCTAGGCGCAAATGCCACCACAAGTTCGTCGAG
CTCGTTGGAGAGCCGTTGGAGCCCACCTGCTATTACCAGCTAAGGGAATC
ATACACACGAAAAGTCAACGGCAGAGCCAAGTTCTCAGGCCCCCTAGTAG
TGGGGATACGAGAACGTAAGGGAAGTGGAACCATCTGCTCCCGGGGTCAT
GTTAATGAAGACACAGATTAGACAGCGGGCCCAGGTAAAAGTTGGTCATC
CCCAACTTATGCCAGTTAGTGCTGTGTAAAGTTTTTGGCCTCTTCCAAAA
ATTAATTAAAATCAGTTTCAACCTAAAAAAAAAAAAAAAAAAAA

AT26658.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Pif2-RA 1040 Pif2-RA 65..889 1..825 4095 99.7 Plus
CG31302-RE 4994 CG31302-RE 4605..4707 448..346 215 80.5 Minus
CG31302.d 5006 CG31302.d 4617..4719 448..346 215 80.5 Minus
CG31302-RE 4994 CG31302-RE 4604..4685 332..251 200 82.9 Minus
CG31302.d 5006 CG31302.d 4616..4697 332..251 200 82.9 Minus
CG31302-RE 4994 CG31302-RE 4593..4693 448..348 190 79.2 Minus
CG31302.d 5006 CG31302.d 4605..4705 448..348 190 79.2 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2374965..2375681 108..824 3555 99.7 Plus
chr3R 27901430 chr3R 2374797..2374905 1..109 545 100 Plus
chr3R 27901430 chr3R 2375073..2375149 381..457 190 83.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:59:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6549204..6549921 108..825 3560 99.7 Plus
3R 32079331 3R 6549036..6549144 1..109 545 100 Plus
3R 32079331 3R 6549312..6549388 381..457 190 83.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6290035..6290752 108..825 3560 99.7 Plus
3R 31820162 3R 6289867..6289975 1..109 545 100 Plus
3R 31820162 3R 15140453..15140555 448..346 215 80.5 Minus
3R 31820162 3R 15140452..15140533 332..251 200 82.9 Minus
3R 31820162 3R 15140441..15140541 448..348 190 79.2 Minus
Blast to na_te.dros performed 2019-03-16 19:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 648..750 382..486 204 69.8 Plus

AT26658.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:53:09 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2374797..2374905 1..109 100 -> Plus
chr3R 2374967..2374981 110..124 100 == Plus
chr3R 2375306..2375681 449..824 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:23:33 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..357 122..478 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:39 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..357 122..478 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:58 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..357 122..478 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:14:15 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..357 122..478 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:33 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..357 122..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:10:05 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..824 1..824 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:39 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..824 1..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:58 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..824 1..824 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:14:15 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..824 1..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:33 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
Pif2-RA 1..824 1..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:09 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6549036..6549144 1..109 100 -> Plus
3R 6549206..6549920 110..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:09 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6549036..6549144 1..109 100 -> Plus
3R 6549206..6549920 110..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:09 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6549036..6549144 1..109 100 -> Plus
3R 6549206..6549920 110..824 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:58 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2374758..2374866 1..109 100 -> Plus
arm_3R 2374928..2375642 110..824 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:54 Download gff for AT26658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6290037..6290751 110..824 99   Plus
3R 6289867..6289975 1..109 100 -> Plus

AT26658.pep Sequence

Translation from 121 to 477

> AT26658.pep
MCSPCCGSCCGPCCSPCCSPCCPPCCNDCCGSCCSPCCGPCCSPCCGPCC
SPCCSPCCTPCCTPCCTPCCKCCTPCCVPCCTPCCTPCCTPCCTPCCSPC
CGPCCSPCCSPCGGSKCK*

AT26658.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pif2-PA 118 CG31483-PA 1..118 1..118 864 100 Plus
Mst84Dd-PA 72 CG17935-PA 3..57 2..58 243 66.1 Plus
Mst84Dd-PA 72 CG17935-PA 7..57 11..62 241 68.5 Plus
Mst84Dd-PA 72 CG17935-PA 3..57 34..89 237 65.5 Plus
Mst84Dd-PA 72 CG17935-PA 7..57 31..81 237 67.9 Plus
Mst84Dd-PA 72 CG17935-PA 3..57 14..77 232 60.9 Plus
Mst98Ca-PA 334 CG11719-PA 172..320 2..113 227 40.7 Plus
Mst84Dd-PA 72 CG17935-PA 8..59 64..115 224 64.8 Plus
Mst84Dd-PA 72 CG17935-PA 3..57 42..109 214 55.7 Plus
Mst84Db-PA 74 CG17934-PA 2..73 37..113 207 50.6 Plus
Mst98Ca-PA 334 CG11719-PA 210..331 2..115 198 40.6 Plus
Mst84Dc-PB 55 CG17945-PB 1..53 1..49 193 61.8 Plus
Mst84Dc-PA 55 CG17945-PA 1..53 1..49 193 61.8 Plus
Mst87F-PB 56 CG17956-PB 1..56 1..58 191 54.8 Plus
Mst87F-PA 56 CG17956-PA 1..56 1..58 191 54.8 Plus
Mst98Ca-PA 334 CG11719-PA 169..304 19..112 188 37.5 Plus
Muc26B-PA 471 CG13990-PA 141..261 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 149..269 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 157..277 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 165..285 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 173..293 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 181..301 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 189..309 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 197..317 2..117 183 27.3 Plus
Muc26B-PA 471 CG13990-PA 205..325 2..117 183 27.3 Plus
Mst84Dc-PB 55 CG17945-PB 2..53 21..76 179 57.9 Plus
Mst84Dc-PA 55 CG17945-PA 2..53 21..76 179 57.9 Plus
Muc26B-PA 471 CG13990-PA 213..327 2..111 179 27.8 Plus
CG17377-PE 207 CG17377-PE 93..196 5..105 176 34.8 Plus
Mst84Db-PA 74 CG17934-PA 12..73 2..47 174 55.6 Plus
Mst84Dc-PB 55 CG17945-PB 2..55 65..117 173 57.1 Plus
Mst84Dc-PA 55 CG17945-PA 2..55 65..117 173 57.1 Plus
Mst84Da-PA 63 CG17946-PA 14..63 11..58 171 56.4 Plus
Muc26B-PA 471 CG13990-PA 229..350 2..117 170 27.9 Plus
CG17377-PD 181 CG17377-PD 93..156 5..79 170 44 Plus
Mst87F-PB 56 CG17956-PB 2..51 72..117 169 58.8 Plus
Mst87F-PA 56 CG17956-PA 2..51 72..117 169 58.8 Plus
CG9130-PB 517 CG9130-PB 236..322 5..76 169 44.6 Plus
CG9130-PA 517 CG9130-PA 236..322 5..76 169 44.6 Plus
Mst98Ca-PA 334 CG11719-PA 157..285 17..113 168 37.6 Plus
Mst87F-PB 56 CG17956-PB 2..56 37..105 168 47.9 Plus
Mst87F-PA 56 CG17956-PA 2..56 37..105 168 47.9 Plus
Mst84Dc-PB 55 CG17945-PB 2..53 37..88 167 52.6 Plus
Mst84Dc-PA 55 CG17945-PA 2..53 37..88 167 52.6 Plus
Mst84Da-PA 63 CG17946-PA 15..63 4..50 167 59.6 Plus
Muc26B-PA 471 CG13990-PA 237..364 2..114 167 28.1 Plus
Muc26B-PA 471 CG13990-PA 245..372 2..118 161 28.1 Plus
CG42758-PA 124 CG42758-PA 44..124 2..69 160 42 Plus
Mst98Cb-PA 265 CG18396-PA 157..265 17..112 159 42.3 Plus
Mst84Da-PA 63 CG17946-PA 15..63 24..70 158 55.8 Plus
Mst98Cb-PA 265 CG18396-PA 172..265 2..84 158 44.3 Plus
Muc26B-PA 471 CG13990-PA 130..237 14..117 157 27.8 Plus
CG17377-PE 207 CG17377-PE 101..200 5..74 155 35.8 Plus
CG9130-PB 517 CG9130-PB 234..316 23..112 155 39.1 Plus
CG9130-PA 517 CG9130-PA 234..316 23..112 155 39.1 Plus
Mst84Da-PA 63 CG17946-PA 14..63 39..85 154 54.7 Plus
CG30430-PB 51 CG30430-PB 3..51 2..50 154 54 Plus
CG30430-PA 51 CG30430-PA 3..51 2..50 154 54 Plus
CG34167-PA 127 CG34167-PA 15..105 6..79 152 36.6 Plus
Mst84Da-PA 63 CG17946-PA 17..63 2..42 150 58.3 Plus
CG30430-PB 51 CG30430-PB 2..51 13..62 149 49 Plus
CG30430-PA 51 CG30430-PA 2..51 13..62 149 49 Plus
CG34167-PA 127 CG34167-PA 2..106 8..107 149 35.5 Plus
CG17377-PD 181 CG17377-PD 81..161 17..114 145 37.8 Plus
CG30430-PB 51 CG30430-PB 2..51 37..85 143 50 Plus
CG30430-PA 51 CG30430-PA 2..51 37..85 143 50 Plus
CG30430-PB 51 CG30430-PB 2..51 25..70 142 50 Plus
CG30430-PA 51 CG30430-PA 2..51 25..70 142 50 Plus
CG30430-PB 51 CG30430-PB 2..51 33..77 139 50 Plus
CG30430-PB 51 CG30430-PB 2..51 41..89 139 48 Plus
CG30430-PA 51 CG30430-PA 2..51 33..77 139 50 Plus
CG30430-PA 51 CG30430-PA 2..51 41..89 139 48 Plus
CG42758-PA 124 CG42758-PA 38..124 18..117 137 35 Plus
Mst84Db-PA 74 CG17934-PA 2..54 65..114 136 51.8 Plus
CG30430-PB 51 CG30430-PB 2..50 72..115 136 53.1 Plus
CG30430-PA 51 CG30430-PA 2..50 72..115 136 53.1 Plus
Mst84Da-PA 63 CG17946-PA 15..62 79..117 134 55.1 Plus
Mst84Dd-PA 72 CG17935-PA 8..33 91..117 132 70.4 Plus

AT26658.hyp Sequence

Translation from 200 to 592

> AT26658.hyp
MTAAGPAAVRVADPVAAPAADPAAAPAAVLAAPPVAPLAARRAASVAHPA
ACRVAHPAAPPAALPVAPLAAVRAAVRAAAPAALLAEGQSASDPRQRIRI
RFRRQELGANATTSSSSSLESRWSPPAITS*
Sequence AT26658.hyp has no blast hits.