Clone AT27079 Report

Search the DGRC for AT27079

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:270
Well:79
Vector:pOTB7
Associated Gene/Transcriptscpr-C-RA
Protein status:AT27079.pep: gold
Preliminary Size:788
Sequenced Size:923

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5106 2002-01-01 Sim4 clustering to Release 2
CG5106 2002-01-18 Blastp of sequenced clone
CG5106 2003-01-01 Sim4 clustering to Release 3
scpr-C 2008-04-29 Release 5.5 accounting
scpr-C 2008-08-15 Release 5.9 accounting
scpr-C 2008-12-18 5.12 accounting

Clone Sequence Records

AT27079.complete Sequence

923 bp (923 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089460

> AT27079.complete
CAACGCTGAAGATGGCCATTAAGTCTCTGATTTTGCTTACTTCCCTGCTG
GGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTGGACAA
GCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCCCAAGG
ACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCAATCTC
TTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGACTACC
CAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTCCCATC
TGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAATGTCGC
AGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTCCAGTA
CAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGAGCAGA
TCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCCTCGCC
AGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACCATCGC
GGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTTCTCCC
GGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACATCGAAC
ATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACCGGGTG
CAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTACGCCA
AGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGATGTAG
GCATGGAATGGACTTCGATTGATGGGACAATGGAATTTGATTAATATGTA
ACATTTTAGTTTAAGAGTGCTGAAAGAATAAATTTTAATTGTTTATGTTT
GCTGTAAAAAAAAAAAAAAAAAA

AT27079.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RA 1058 scpr-C-RA 95..1001 1..907 4445 99.3 Plus
scpr-B-RA 1092 scpr-B-RA 189..989 1..801 3825 98.5 Plus
scpr-A-RA 879 scpr-A-RA 78..808 69..799 3355 97.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7051295..7052075 126..905 3735 98.8 Plus
chr3R 27901430 chr3R 7065711..7066386 801..126 3245 98.7 Minus
chr3R 27901430 chr3R 7066958..7067628 129..799 3175 98.2 Plus
chr3R 27901430 chr3R 7051117..7051241 1..125 625 100 Plus
chr3R 27901430 chr3R 7066440..7066564 125..1 610 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226484 126..907 3820 99.2 Plus
3R 32079331 3R 11240137..11240812 801..126 3215 98.4 Minus
3R 32079331 3R 11241384..11242054 129..799 3175 98.2 Plus
3R 32079331 3R 11225525..11225649 1..125 625 100 Plus
3R 32079331 3R 11240866..11240990 125..1 610 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10966534..10967315 126..907 3820 99.2 Plus
3R 31820162 3R 10980968..10981643 801..126 3215 98.3 Minus
3R 31820162 3R 10982215..10982885 129..799 3175 98.2 Plus
3R 31820162 3R 10966356..10966480 1..125 625 100 Plus
3R 31820162 3R 10981697..10981821 125..1 610 99.2 Minus
3R 31820162 3R 10982090..10982146 69..125 180 87.7 Plus
Blast to na_te.dros performed on 2019-03-15 17:25:33 has no hits.

AT27079.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:26:23 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7051117..7051241 1..125 100 -> Plus
chr3R 7051295..7052075 126..905 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:24:33 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 12..800 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:26 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 12..800 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:36:01 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 12..800 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:13:58 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 12..800 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:28 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 12..800 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:53 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 6..910 1..905 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:26 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 6..910 1..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:36:01 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 6..910 1..905 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:13:59 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 6..910 1..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:28 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 6..910 1..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:23 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11225525..11225649 1..125 100 -> Plus
3R 11225703..11226482 126..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:23 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11225525..11225649 1..125 100 -> Plus
3R 11225703..11226482 126..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:23 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11225525..11225649 1..125 100 -> Plus
3R 11225703..11226482 126..905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:01 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051247..7051371 1..125 100 -> Plus
arm_3R 7051425..7052204 126..905 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:45 Download gff for AT27079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10966534..10967313 126..905 99   Plus
3R 10966356..10966480 1..125 100 -> Plus

AT27079.hyp Sequence

Translation from 2 to 799

> AT27079.hyp
TLKMAIKSLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKD
VREVKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHL
ALLNVKTCESLPDKCRSTERFAYAGQNNAVFQYSGAETEYTDAEIIKEQI
ENWFAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSR
DFYNHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAK
EIYDNEKVIENTQTM*

AT27079.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-PB 262 CG5106-PB 1..262 4..265 1389 100 Plus
scpr-C-PA 262 CG5106-PA 1..262 4..265 1389 100 Plus
scpr-B-PA 262 CG17210-PA 1..262 4..265 1381 99.2 Plus
scpr-A-PA 264 CG5207-PA 9..264 10..265 1321 95.3 Plus
Ag5r2-PA 254 CG9540-PA 1..250 2..254 411 34 Plus

AT27079.pep Sequence

Translation from 11 to 799

> AT27079.pep
MAIKSLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNAVFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTM*

AT27079.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18165-PA 262 GF18165-PA 1..256 1..256 1259 88.7 Plus
Dana\GF16741-PA 260 GF16741-PA 1..259 3..261 1228 83.4 Plus
Dana\GF18253-PA 268 GF18253-PA 12..267 6..261 1212 84.4 Plus
Dana\GF21598-PA 255 GF21598-PA 8..251 7..251 440 35.5 Plus
Dana\GF21595-PA 256 GF21595-PA 11..255 6..251 418 38 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18056-PA 264 GG18056-PA 9..264 7..262 1288 91 Plus
Dere\GG17989-PA 262 GG17989-PA 1..262 1..262 1283 95 Plus
Dere\GG17230-PA 262 GG17230-PA 1..262 1..262 1282 94.7 Plus
Dere\GG19450-PA 288 GG19450-PA 35..284 1..251 433 35 Plus
Dere\GG13982-PA 277 GG13982-PA 24..262 14..252 379 37.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17351-PA 260 GH17351-PA 1..258 3..260 1208 82.9 Plus
Dgri\GH18802-PA 260 GH18802-PA 1..254 3..256 1191 82.7 Plus
Dgri\GH14934-PA 265 GH14934-PA 6..263 3..260 1188 81.4 Plus
Dgri\GH17451-PA 253 GH17451-PA 3..252 5..251 427 36.4 Plus
Dgri\GH24697-PA 274 GH24697-PA 19..268 1..251 400 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-PB 262 CG5106-PB 1..262 1..262 1389 100 Plus
scpr-C-PA 262 CG5106-PA 1..262 1..262 1389 100 Plus
scpr-B-PA 262 CG17210-PA 1..262 1..262 1381 99.2 Plus
scpr-A-PA 264 CG5207-PA 9..264 7..262 1321 95.3 Plus
Ag5r2-PA 254 CG9540-PA 1..250 1..251 409 34.6 Plus
CG6628-PA 277 CG6628-PA 30..262 20..252 390 39.1 Plus
CG32679-PA 254 CG32679-PA 11..248 6..251 370 34.7 Plus
Ag5r-PC 256 CG9538-PC 1..250 3..251 369 32.5 Plus
Ag5r-PB 256 CG9538-PB 1..250 3..251 369 32.5 Plus
Ag5r-PA 256 CG9538-PA 1..250 3..251 369 32.5 Plus
CG17575-PA 291 CG17575-PA 9..287 6..255 363 34.9 Plus
CG31296-PB 280 CG31296-PB 18..261 14..260 357 33.5 Plus
CG31296-PA 280 CG31296-PA 18..261 14..260 357 33.5 Plus
CG9822-PA 263 CG9822-PA 12..257 9..251 356 35.5 Plus
CG17575-PB 298 CG17575-PB 9..294 6..255 348 34.5 Plus
CG42564-PA 500 CG10284-PA 54..284 20..251 328 34.9 Plus
CG3640-PA 296 CG3640-PA 25..251 20..251 327 34.3 Plus
CG42780-PA 253 CG42780-PA 8..250 7..244 317 32.1 Plus
CG17974-PA 259 CG17974-PA 8..256 6..251 317 33.1 Plus
CG9400-PA 308 CG9400-PA 69..302 31..262 316 31.5 Plus
CG42780-PB 254 CG42780-PB 8..251 7..244 308 32 Plus
CG34002-PB 350 CG34002-PB 11..251 9..244 260 30.7 Plus
CG10651-PB 316 CG10651-PB 2..252 3..249 232 28.4 Plus
CG10651-PA 316 CG10651-PA 2..252 3..249 232 28.4 Plus
CG30486-PA 263 CG30486-PA 6..250 5..248 223 26.8 Plus
CG8072-PA 247 CG8072-PA 20..247 17..251 207 28.9 Plus
CG43775-PA 272 CG43775-PA 70..262 61..244 181 30.5 Plus
CG43776-PA 270 CG43776-PA 67..260 60..245 157 27.8 Plus
CG43776-PB 270 CG43776-PB 67..260 60..245 157 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\Tes33-PA 265 GI23699-PA 9..265 6..262 1207 82.5 Plus
Dmoj\GI23890-PA 260 GI23890-PA 1..260 3..262 1203 81.2 Plus
Dmoj\Tes104-PA 260 GI22692-PA 1..258 3..260 1202 81.8 Plus
Dmoj\GI15745-PA 257 GI15745-PA 8..250 7..251 424 38.3 Plus
Dmoj\GI15744-PA 256 GI15744-PA 17..255 14..251 421 37.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12032-PA 261 GL12032-PA 5..255 6..256 1179 86.1 Plus
Dper\GL12570-PA 261 GL12570-PA 5..255 6..256 1171 85.7 Plus
Dper\GL12692-PA 287 GL12692-PA 1..256 1..258 404 34.9 Plus
Dper\GL12693-PA 296 GL12693-PA 6..258 3..258 402 33.7 Plus
Dper\GL20410-PA 254 GL20410-PA 18..250 18..251 398 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18663-PA 261 GA18663-PA 5..255 6..256 1171 85.7 Plus
Dpse\GA29233-PA 258 GA29233-PA 2..257 3..251 465 38.6 Plus
Dpse\GA16157-PA 287 GA16157-PA 1..256 1..258 404 34.9 Plus
Dpse\GA27590-PA 296 GA27590-PA 6..258 3..258 401 33.7 Plus
Dpse\GA21866-PA 254 GA21866-PA 18..250 18..251 398 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26110-PA 262 GM26110-PA 1..262 1..262 1397 99.2 Plus
Dsec\GM23927-PA 262 GM23927-PA 1..262 1..262 1388 98.5 Plus
Dsec\GM16873-PA 224 GM16873-PA 1..224 39..262 1190 98.7 Plus
Dsec\GM23934-PA 221 GM23934-PA 8..221 49..262 1133 98.1 Plus
Dsec\GM26114-PA 449 GM26114-PA 9..192 7..190 949 94 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20669-PA 262 GD20669-PA 1..262 1..262 1391 98.5 Plus
Dsim\GD18744-PA 277 GD18744-PA 9..259 7..257 1285 92.8 Plus
Dsim\GD18740-PA 261 GD18740-PA 1..261 1..262 1245 95 Plus
Dsim\GD16039-PA 254 GD16039-PA 8..248 3..251 380 34.7 Plus
Dsim\GD12870-PA 277 GD12870-PA 30..262 20..252 371 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24678-PA 261 GJ24678-PA 2..261 3..262 1207 83.5 Plus
Dvir\GJ23982-PA 265 GJ23982-PA 9..265 6..262 1194 81.7 Plus
Dvir\GJ23256-PA 260 GJ23256-PA 12..260 14..262 1177 83.5 Plus
Dvir\GJ23420-PA 260 GJ23420-PA 18..260 20..262 1161 85.6 Plus
Dvir\GJ18605-PA 253 GJ18605-PA 6..252 6..251 437 37.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13988-PA 262 GK13988-PA 5..260 5..260 1188 82.4 Plus
Dwil\GK14308-PA 260 GK14308-PA 1..259 3..261 1179 80.3 Plus
Dwil\GK13291-PA 266 GK13291-PA 11..266 7..262 1154 80.5 Plus
Dwil\GK18435-PA 257 GK18435-PA 23..256 18..251 475 42.4 Plus
Dwil\GK14730-PA 256 GK14730-PA 17..255 15..251 451 41.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26087-PA 264 GE26087-PA 9..264 7..262 1297 91.8 Plus
Dyak\GE24631-PA 262 GE24631-PA 1..262 1..262 1293 95 Plus
Dyak\GE26080-PA 262 GE26080-PA 1..262 1..262 1283 93.9 Plus
Dyak\GE16103-PA 283 GE16103-PA 30..279 1..251 439 35.4 Plus
Dyak\GE15398-PA 253 GE15398-PA 11..247 7..251 374 34.4 Plus