Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT27166.complete Sequence
1416 bp (1416 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089462
> AT27166.complete
GATGTCAAACATTTCTACACCTTTTGTGCTTTAACATGTACACAAAATTG
TCATATCCGTGAGTTGGCCTCTCCGGGTGGTGAAGAGTTGAAGATGTTCT
GCACGGAGAGCTGTGAGCACGGATGCAATGCAACCTCGTCGGGCAAGCTG
ATCGCCAATGGAAACGGTGGCGGCCTGCAGTCGCAGGGAAATTCACAGCA
TCAGTTCACCATGTCCTACGCTCCACTGTCGACCAACGATGTGCCCTCCA
AGTCCGAGGTGGAACCACCGCGACTGGGCATGTGCCTGGTCACCGAGTGT
CCAGAGGGTCTGAGCATTGACTGCAATGTGCCACTGCCGAATTCTTTCAA
TTTGGATGAATACAAAAATCACATGATCTGCTCGAGCTGTACCCAGTTCA
ATGGTGGCTTGGACAGATTTGGCCAGCCAGGTACAGCCGGTCCAAGTGCC
AGTCCTAGTGCCAATCCATATCCAACTCCGATGCCCAATCCCATCCAGGC
CTCTCCTTGCAGCTTTCATGGCCAGTGTTGTTCAGCCGGTGGACCATGCG
CTGGATATGATTCGCAGCCAAATCCATCAAGATGCTATCGACAGGAATCA
TCGTTGGCTCAAGGAGCCCCAGCGATGCCGCAGATCTTTTGCCTGGCACC
ACCCAGTTCCCATGGTGGCTTAAATCAGCCCGTTTACTTGTGCAGCCTGA
TTCCAGTTCCGCCATCGTGGAACCTGGTGCCGCTGGCCCAACCGCAGCAC
TTGACGCATCAGCAGCTGCTGACGAATCCCGCACAGGACTCGCAGCTGCC
GTTGCAGCAATTGGTGCAGTACGACCTGTCCTTCAATCGCCTGCTGGCCG
AATTGCGCAAGGAACGGGAGAGGTCCTGTTGTGACCTGCAGATCCCCCAG
CCTCTGGCTTTCCAGCTGTATGCGCCCACGGTTAGGTTTCTTGATCAGCC
AGATTCCAGTTCGGCGAAGAGAGAGCCTCATTGCCCGCCGGCAGCTCCTT
GTGCTCCTCCAGCTGCACCACCACAACCACCATCCTCGTCATCATCCCCA
ACAGCCACATCTGCCTCCGCCGCCGGGCTGCCCAGAGCTCGTTCGGCCAG
CCCGAAGCGCAGTCGTTCGTGTCTCCGGAACAAGGATCTCTGGGACAGTG
GCGGATCCGTACCAGGTCCATCCCCCTGCTCCTCGCCCACCCAACATGCG
ACCGGAAATGTGTGCATGAAGTGCGGAAACTGCTGGCATTGTCCGCGCTG
CAACTGCTCCAACTGCTTCTGGCATCCCGGCTTGGTGCGAGCTCCTCCAA
GAGATGGTCGCTAGGGAAGGGGACTAAGAGCCACTCCTACACTGTAAAAG
AAGAAAGTGTAATAAAATTCCAAGACTTTTAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
AT27166.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hale-RA | 1488 | hale-RA | 36..1421 | 1..1386 | 6900 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 19973744..19974815 | 1384..313 | 5330 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 19974873..19975186 | 314..1 | 1555 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19984424..19985497 | 1386..313 | 5340 | 99.8 | Minus |
3L | 28110227 | 3L | 19985555..19985868 | 314..1 | 1570 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 19977524..19978597 | 1386..313 | 5340 | 99.8 | Minus |
3L | 28103327 | 3L | 19978655..19978968 | 314..1 | 1570 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 21:48:57 has no hits.
AT27166.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:08 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 19973744..19974813 | 315..1384 | 99 | <- | Minus |
chr3L | 19974873..19975186 | 1..314 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:24:43 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1221 | 94..1314 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:30 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1221 | 94..1314 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:58:55 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1221 | 94..1314 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:14:05 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1221 | 94..1314 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:26 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1221 | 94..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:56 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1384 | 1..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:29 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1384 | 1..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:58:55 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1384 | 1..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:14:05 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1384 | 1..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:26 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hale-RA | 1..1384 | 1..1384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:08 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19984426..19985495 | 315..1384 | 99 | <- | Minus |
3L | 19985555..19985868 | 1..314 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:08 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19984426..19985495 | 315..1384 | 99 | <- | Minus |
3L | 19985555..19985868 | 1..314 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:08 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19984426..19985495 | 315..1384 | 99 | <- | Minus |
3L | 19985555..19985868 | 1..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:58:55 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19977526..19978595 | 315..1384 | 99 | <- | Minus |
arm_3L | 19978655..19978968 | 1..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:48 Download gff for
AT27166.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19977526..19978595 | 315..1384 | 99 | <- | Minus |
3L | 19978655..19978968 | 1..314 | 100 | | Minus |
AT27166.hyp Sequence
Translation from 1 to 1313
> AT27166.hyp
DVKHFYTFCALTCTQNCHIRELASPGGEELKMFCTESCEHGCNATSSGKL
IANGNGGGLQSQGNSQHQFTMSYAPLSTNDVPSKSEVEPPRLGMCLVTEC
PEGLSIDCNVPLPNSFNLDEYKNHMICSSCTQFNGGLDRFGQPGTAGPSA
SPSANPYPTPMPNPIQASPCSFHGQCCSAGGPCAGYDSQPNPSRCYRQES
SLAQGAPAMPQIFCLAPPSSHGGLNQPVYLCSLIPVPPSWNLVPLAQPQH
LTHQQLLTNPAQDSQLPLQQLVQYDLSFNRLLAELRKERERSCCDLQIPQ
PLAFQLYAPTVRFLDQPDSSSAKREPHCPPAAPCAPPAAPPQPPSSSSSP
TATSASAAGLPRARSASPKRSRSCLRNKDLWDSGGSVPGPSPCSSPTQHA
TGNVCMKCGNCWHCPRCNCSNCFWHPGLVRAPPRDGR*
AT27166.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hale-PA | 406 | CG7570-PA | 1..406 | 32..437 | 2267 | 100 | Plus |
AT27166.pep Sequence
Translation from 93 to 1313
> AT27166.pep
MFCTESCEHGCNATSSGKLIANGNGGGLQSQGNSQHQFTMSYAPLSTNDV
PSKSEVEPPRLGMCLVTECPEGLSIDCNVPLPNSFNLDEYKNHMICSSCT
QFNGGLDRFGQPGTAGPSASPSANPYPTPMPNPIQASPCSFHGQCCSAGG
PCAGYDSQPNPSRCYRQESSLAQGAPAMPQIFCLAPPSSHGGLNQPVYLC
SLIPVPPSWNLVPLAQPQHLTHQQLLTNPAQDSQLPLQQLVQYDLSFNRL
LAELRKERERSCCDLQIPQPLAFQLYAPTVRFLDQPDSSSAKREPHCPPA
APCAPPAAPPQPPSSSSSPTATSASAAGLPRARSASPKRSRSCLRNKDLW
DSGGSVPGPSPCSSPTQHATGNVCMKCGNCWHCPRCNCSNCFWHPGLVRA
PPRDGR*
AT27166.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10835-PA | 445 | GF10835-PA | 1..438 | 1..406 | 616 | 42.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13355-PA | 405 | GG13355-PA | 1..405 | 1..406 | 1497 | 80.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hale-PA | 406 | CG7570-PA | 1..406 | 1..406 | 2267 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15039-PA | 406 | GM15039-PA | 1..406 | 1..406 | 1811 | 93.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12236-PA | 406 | GD12236-PA | 1..406 | 1..406 | 1708 | 93.3 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13988-PA | 568 | GJ13988-PA | 1..128 | 1..94 | 184 | 32.8 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK16823-PA | 463 | GK16823-PA | 1..103 | 1..94 | 263 | 55.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22448-PA | 406 | GE22448-PA | 1..406 | 1..406 | 1619 | 83.7 | Plus |