Clone AT27166 Report

Search the DGRC for AT27166

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:271
Well:66
Vector:pOTB7
Associated Gene/Transcripthale-RA
Protein status:AT27166.pep: gold
Sequenced Size:1416

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7570 2002-01-01 Sim4 clustering to Release 2
CG7570 2002-01-18 Blastp of sequenced clone
CG7570 2003-01-01 Sim4 clustering to Release 3
hale 2008-04-29 Release 5.5 accounting
hale 2008-08-15 Release 5.9 accounting
hale 2008-12-18 5.12 accounting

Clone Sequence Records

AT27166.complete Sequence

1416 bp (1416 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089462

> AT27166.complete
GATGTCAAACATTTCTACACCTTTTGTGCTTTAACATGTACACAAAATTG
TCATATCCGTGAGTTGGCCTCTCCGGGTGGTGAAGAGTTGAAGATGTTCT
GCACGGAGAGCTGTGAGCACGGATGCAATGCAACCTCGTCGGGCAAGCTG
ATCGCCAATGGAAACGGTGGCGGCCTGCAGTCGCAGGGAAATTCACAGCA
TCAGTTCACCATGTCCTACGCTCCACTGTCGACCAACGATGTGCCCTCCA
AGTCCGAGGTGGAACCACCGCGACTGGGCATGTGCCTGGTCACCGAGTGT
CCAGAGGGTCTGAGCATTGACTGCAATGTGCCACTGCCGAATTCTTTCAA
TTTGGATGAATACAAAAATCACATGATCTGCTCGAGCTGTACCCAGTTCA
ATGGTGGCTTGGACAGATTTGGCCAGCCAGGTACAGCCGGTCCAAGTGCC
AGTCCTAGTGCCAATCCATATCCAACTCCGATGCCCAATCCCATCCAGGC
CTCTCCTTGCAGCTTTCATGGCCAGTGTTGTTCAGCCGGTGGACCATGCG
CTGGATATGATTCGCAGCCAAATCCATCAAGATGCTATCGACAGGAATCA
TCGTTGGCTCAAGGAGCCCCAGCGATGCCGCAGATCTTTTGCCTGGCACC
ACCCAGTTCCCATGGTGGCTTAAATCAGCCCGTTTACTTGTGCAGCCTGA
TTCCAGTTCCGCCATCGTGGAACCTGGTGCCGCTGGCCCAACCGCAGCAC
TTGACGCATCAGCAGCTGCTGACGAATCCCGCACAGGACTCGCAGCTGCC
GTTGCAGCAATTGGTGCAGTACGACCTGTCCTTCAATCGCCTGCTGGCCG
AATTGCGCAAGGAACGGGAGAGGTCCTGTTGTGACCTGCAGATCCCCCAG
CCTCTGGCTTTCCAGCTGTATGCGCCCACGGTTAGGTTTCTTGATCAGCC
AGATTCCAGTTCGGCGAAGAGAGAGCCTCATTGCCCGCCGGCAGCTCCTT
GTGCTCCTCCAGCTGCACCACCACAACCACCATCCTCGTCATCATCCCCA
ACAGCCACATCTGCCTCCGCCGCCGGGCTGCCCAGAGCTCGTTCGGCCAG
CCCGAAGCGCAGTCGTTCGTGTCTCCGGAACAAGGATCTCTGGGACAGTG
GCGGATCCGTACCAGGTCCATCCCCCTGCTCCTCGCCCACCCAACATGCG
ACCGGAAATGTGTGCATGAAGTGCGGAAACTGCTGGCATTGTCCGCGCTG
CAACTGCTCCAACTGCTTCTGGCATCCCGGCTTGGTGCGAGCTCCTCCAA
GAGATGGTCGCTAGGGAAGGGGACTAAGAGCCACTCCTACACTGTAAAAG
AAGAAAGTGTAATAAAATTCCAAGACTTTTAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

AT27166.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
hale-RA 1488 hale-RA 36..1421 1..1386 6900 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19973744..19974815 1384..313 5330 99.8 Minus
chr3L 24539361 chr3L 19974873..19975186 314..1 1555 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19984424..19985497 1386..313 5340 99.8 Minus
3L 28110227 3L 19985555..19985868 314..1 1570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19977524..19978597 1386..313 5340 99.8 Minus
3L 28103327 3L 19978655..19978968 314..1 1570 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:48:57 has no hits.

AT27166.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:08 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19973744..19974813 315..1384 99 <- Minus
chr3L 19974873..19975186 1..314 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:24:43 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1221 94..1314 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:30 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1221 94..1314 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:58:55 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1221 94..1314 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:14:05 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1221 94..1314 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:26 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1221 94..1314 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:56 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1384 1..1384 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:29 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1384 1..1384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:58:55 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1384 1..1384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:14:05 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1384 1..1384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:26 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
hale-RA 1..1384 1..1384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:08 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19984426..19985495 315..1384 99 <- Minus
3L 19985555..19985868 1..314 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:08 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19984426..19985495 315..1384 99 <- Minus
3L 19985555..19985868 1..314 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:08 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19984426..19985495 315..1384 99 <- Minus
3L 19985555..19985868 1..314 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:58:55 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19977526..19978595 315..1384 99 <- Minus
arm_3L 19978655..19978968 1..314 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:48 Download gff for AT27166.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19977526..19978595 315..1384 99 <- Minus
3L 19978655..19978968 1..314 100   Minus

AT27166.hyp Sequence

Translation from 1 to 1313

> AT27166.hyp
DVKHFYTFCALTCTQNCHIRELASPGGEELKMFCTESCEHGCNATSSGKL
IANGNGGGLQSQGNSQHQFTMSYAPLSTNDVPSKSEVEPPRLGMCLVTEC
PEGLSIDCNVPLPNSFNLDEYKNHMICSSCTQFNGGLDRFGQPGTAGPSA
SPSANPYPTPMPNPIQASPCSFHGQCCSAGGPCAGYDSQPNPSRCYRQES
SLAQGAPAMPQIFCLAPPSSHGGLNQPVYLCSLIPVPPSWNLVPLAQPQH
LTHQQLLTNPAQDSQLPLQQLVQYDLSFNRLLAELRKERERSCCDLQIPQ
PLAFQLYAPTVRFLDQPDSSSAKREPHCPPAAPCAPPAAPPQPPSSSSSP
TATSASAAGLPRARSASPKRSRSCLRNKDLWDSGGSVPGPSPCSSPTQHA
TGNVCMKCGNCWHCPRCNCSNCFWHPGLVRAPPRDGR*

AT27166.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
hale-PA 406 CG7570-PA 1..406 32..437 2267 100 Plus

AT27166.pep Sequence

Translation from 93 to 1313

> AT27166.pep
MFCTESCEHGCNATSSGKLIANGNGGGLQSQGNSQHQFTMSYAPLSTNDV
PSKSEVEPPRLGMCLVTECPEGLSIDCNVPLPNSFNLDEYKNHMICSSCT
QFNGGLDRFGQPGTAGPSASPSANPYPTPMPNPIQASPCSFHGQCCSAGG
PCAGYDSQPNPSRCYRQESSLAQGAPAMPQIFCLAPPSSHGGLNQPVYLC
SLIPVPPSWNLVPLAQPQHLTHQQLLTNPAQDSQLPLQQLVQYDLSFNRL
LAELRKERERSCCDLQIPQPLAFQLYAPTVRFLDQPDSSSAKREPHCPPA
APCAPPAAPPQPPSSSSSPTATSASAAGLPRARSASPKRSRSCLRNKDLW
DSGGSVPGPSPCSSPTQHATGNVCMKCGNCWHCPRCNCSNCFWHPGLVRA
PPRDGR*

AT27166.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10835-PA 445 GF10835-PA 1..438 1..406 616 42.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13355-PA 405 GG13355-PA 1..405 1..406 1497 80.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
hale-PA 406 CG7570-PA 1..406 1..406 2267 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15039-PA 406 GM15039-PA 1..406 1..406 1811 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12236-PA 406 GD12236-PA 1..406 1..406 1708 93.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13988-PA 568 GJ13988-PA 1..128 1..94 184 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16823-PA 463 GK16823-PA 1..103 1..94 263 55.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22448-PA 406 GE22448-PA 1..406 1..406 1619 83.7 Plus