Clone AT27305 Report

Search the DGRC for AT27305

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:273
Well:5
Vector:pOTB7
Associated Gene/TranscriptCG31874-RA
Protein status:AT27305.pep: gold
Sequenced Size:1642

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31874 2003-01-01 Sim4 clustering to Release 3
CG31874 2004-03-31 Blastp of sequenced clone
CG31874 2008-04-29 Release 5.5 accounting
CG31874 2008-08-15 Release 5.9 accounting
CG31874 2008-12-18 5.12 accounting

Clone Sequence Records

AT27305.complete Sequence

1642 bp (1642 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012504

> AT27305.complete
CTTTTCCTGGCCTGTACTTTTCGGCCTAAATATTTCATTTCGTAACACAT
ATACACATTAAAATTTTCCAAAATGTCTTTCGATCAGAAGGAGATTTTCA
GTTTGATGTACAAACTGGCTCGGCTAATAGTGCCGGATACTCGAGTTGAA
TATGATTCGATGGGTGCCGTGCACATTCCTCTCGATCGAATGTTCGGTCC
GCAAACCATGAGATCCCTGATGAAATTTCCAATTGGCGGAGTTGAGGAAC
GAATGCCACGACCCCTAATAAAAGCCCTGGGCATAGTGAAGAAATCAGCT
GCGGAGACGAACAAAATCCATTGTCTGGAGGAGCATCTATGCGATGCCAT
TTCCAAGGCCTGCGATGATGTTATATCGGGCAAACTCTATGACGAGGAAC
ACTTTCCGTTGGTTATATGGCAGGATGGAAGCGGCGAGCACACAAACATG
AACGTAAACGAGGTTATATGCAATCGAGCCATCGAAATTCTGGGCGGTCA
GATGGGCTCCAAGGAGCCGGTGGATCCCAATGAACATGTCAACATGGCGC
AAAGTTCCCATGACACCTTCTCGACAGCCGTGCGCATCGCCGTGGCCATG
CAGTTGCAGGAGACGCTGTATCCCAGCTTAAGGACCTTTATTGATTTGCT
GGGCAAGAAGTCGAACGATTGGATGGATTTGATCAAGATTGGTAGAACGC
ATCTGATGGACGCAGTTCCTCTGTCCCTCGGCCAGGAGTTCAGTGGCTAT
CAGCAGCAACTTGTGAACGGAAGGACGCGATTGGACTGTGCCATGTGCCG
ATTGTATCAGTTGCCCATGGGCGGCACCAGTGTGGGCACCAAAGTGGACA
CCAAGGCGGAATATTCTGCGCAGTGCATCAAGCGTATAGCCGAGCTAACA
TTCCTACCCTTTGTCGAGTCCCCGAACTTTTTTGAATCCATCTCCGCCTG
CGATTGCCTGGTGGAACTGCACGGTGAACTCAACACGATTGCAGCGAGTG
TGATGAAGATAGCGAATGATATACGATTCCTTGGATCGGGACCACGTTGC
GGATTTGGTGAACTACATCTGCCGGAGAACGAACCAGGTAGTTCCATAAT
GCCCGGCAAAGTGAATCCCACGCAATGCGAGGCCATGTCCATGATCTGTG
CCCAGGTGATGGGCAACCATGTGGCCGTCTCCATGGGTGGTTCCTCTGGC
CACTTTCAGCTGAACACCTTTATGCCCATGATTGCCTCCAATGTTTTGCG
CTCGATTACACTTTTGGGCGATGGCATGAAGTCCTTTTGCACCAATTGCC
TCGAGGGCATCGAGCCCAATAGGAGCAAGATTGGTAGCATCGTCAAGGAG
TCCCTGATGCTGGTCACTGCCCTCAGTCCACACATTGGCTACGAACGATC
CGCTGCGATCGCCAAGGCAGCGCATCACAATGGAACCACTTTGGAACAGG
AGGCCATACTTGATGGCATTCAACGGGAGGACTTCAGGGAGTGGGTGCAG
CCCAGCAAGATGCTGGGTCCCGAATAGTCGAAATGGCCACAAAACAGTAT
CATAATTTAAATAAATTGTTTCAATTATTATGTCGAGCTTTAAAATTTAA
TAAATGCGGTCAATTGGCTCTGTAAAAAAAAAAAAAAAAAAA

AT27305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31874-RA 1623 CG31874-RA 5..1623 1..1619 8095 100 Plus
CG6140-RA 1740 CG6140-RA 1011..1254 1001..1244 575 82.3 Plus
CG6140.a 1811 CG6140.a 1082..1325 1001..1244 575 82.3 Plus
CG6140-RA 1740 CG6140-RA 455..608 445..598 215 75.9 Plus
CG6140.a 1811 CG6140.a 526..679 445..598 215 75.9 Plus
CG6140-RA 1740 CG6140-RA 1349..1450 1339..1440 165 77.4 Plus
CG6140.a 1811 CG6140.a 1420..1521 1339..1440 165 77.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10188704..10190068 1623..259 6825 100 Minus
chr2L 23010047 chr2L 10190123..10190380 258..1 1290 100 Minus
chr3L 24539361 chr3L 11454880..11455123 1244..1001 575 82.4 Minus
chrX 22417052 chrX 6573223..6573534 946..1257 540 78.2 Plus
chrX 22417052 chrX 6575162..6575430 946..1214 520 79.6 Plus
chr3L 24539361 chr3L 11455526..11455679 598..445 215 76 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10189819..10191184 1624..259 6830 100 Minus
2L 23513712 2L 10191239..10191496 258..1 1290 100 Minus
3L 28110227 3L 11464106..11464349 1244..1001 575 82.4 Minus
X 23542271 X 6681051..6681362 946..1257 540 78.2 Plus
X 23542271 X 6682989..6683237 946..1194 510 80.3 Plus
3L 28110227 3L 11464752..11464905 598..445 215 76 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10189819..10191184 1624..259 6830 100 Minus
2L 23513712 2L 10191239..10191496 258..1 1290 100 Minus
3L 28103327 3L 11457206..11457449 1244..1001 575 82.3 Minus
X 23527363 X 6689149..6689460 946..1257 540 78.2 Plus
X 23527363 X 6691087..6691335 946..1194 510 80.3 Plus
3L 28103327 3L 11457852..11458005 598..445 215 75.9 Minus
3L 28103327 3L 11456955..11457056 1440..1339 165 77.4 Minus
X 23527363 X 6688673..6688799 470..596 155 74.8 Plus
Blast to na_te.dros performed 2019-03-16 02:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 4839..4930 1611..1522 157 66.3 Minus

AT27305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:56:13 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10188704..10190068 259..1623 100 <- Minus
chr2L 10190123..10190380 1..258 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:25:07 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1455 73..1527 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:47 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1455 73..1527 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:14 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1455 73..1527 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:32 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1455 73..1527 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:26 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1455 73..1527 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:53 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1527 1..1527 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:47 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1623 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:14 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1623 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:32 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1527 1..1527 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:26 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
CG31874-RA 1..1623 1..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:13 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10189820..10191184 259..1623 100 <- Minus
2L 10191239..10191496 1..258 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:13 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10189820..10191184 259..1623 100 <- Minus
2L 10191239..10191496 1..258 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:13 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10189820..10191184 259..1623 100 <- Minus
2L 10191239..10191496 1..258 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:14 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10189820..10191184 259..1623 100 <- Minus
arm_2L 10191239..10191496 1..258 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:57 Download gff for AT27305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10189820..10191184 259..1623 100 <- Minus
2L 10191239..10191496 1..258 100   Minus

AT27305.pep Sequence

Translation from 72 to 1526

> AT27305.pep
MSFDQKEIFSLMYKLARLIVPDTRVEYDSMGAVHIPLDRMFGPQTMRSLM
KFPIGGVEERMPRPLIKALGIVKKSAAETNKIHCLEEHLCDAISKACDDV
ISGKLYDEEHFPLVIWQDGSGEHTNMNVNEVICNRAIEILGGQMGSKEPV
DPNEHVNMAQSSHDTFSTAVRIAVAMQLQETLYPSLRTFIDLLGKKSNDW
MDLIKIGRTHLMDAVPLSLGQEFSGYQQQLVNGRTRLDCAMCRLYQLPMG
GTSVGTKVDTKAEYSAQCIKRIAELTFLPFVESPNFFESISACDCLVELH
GELNTIAASVMKIANDIRFLGSGPRCGFGELHLPENEPGSSIMPGKVNPT
QCEAMSMICAQVMGNHVAVSMGGSSGHFQLNTFMPMIASNVLRSITLLGD
GMKSFCTNCLEGIEPNRSKIGSIVKESLMLVTALSPHIGYERSAAIAKAA
HHNGTTLEQEAILDGIQREDFREWVQPSKMLGPE*

AT27305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14135-PA 2594 GF14135-PA 938..1359 63..484 1662 72.7 Plus
Dana\GF25158-PA 466 GF25158-PA 5..465 23..483 1646 63.8 Plus
Dana\GF21422-PA 498 GF21422-PA 31..498 17..484 1598 61.2 Plus
Dana\GF21423-PA 505 GF21423-PA 45..505 24..484 1579 61.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13920-PA 470 GG13920-PA 8..469 22..483 1646 64.3 Plus
Dere\GG19604-PA 495 GG19604-PA 28..495 17..484 1607 61.6 Plus
Dere\GG19605-PA 503 GG19605-PA 43..503 24..484 1600 62 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16362-PA 489 GH16362-PA 1..483 1..483 1693 64 Plus
Dgri\GH16363-PA 475 GH16363-PA 14..474 23..483 1610 62.7 Plus
Dgri\GH24716-PA 496 GH24716-PA 29..496 17..484 1594 60.1 Plus
Dgri\GH24717-PA 488 GH24717-PA 28..487 24..483 1575 62 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Fum4-PA 484 CG31874-PA 1..484 1..484 2525 100 Plus
Fum3-PB 470 CG6140-PB 8..469 22..483 1591 64.7 Plus
Fum3-PA 470 CG6140-PA 8..469 22..483 1591 64.7 Plus
Fum1-PA 495 CG4094-PA 28..495 17..484 1531 61.6 Plus
Fum2-PA 503 CG4095-PA 43..503 24..484 1527 61.4 Plus
Fum1-PB 467 CG4094-PB 7..467 24..484 1526 62.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21815-PA 502 GI21815-PA 42..502 24..484 1590 61.6 Plus
Dmoj\GI21814-PA 496 GI21814-PA 29..496 17..484 1586 60.6 Plus
Dmoj\GI11555-PA 467 GI11555-PA 6..466 23..483 1580 61 Plus
Dmoj\GI11554-PA 485 GI11554-PA 1..480 1..481 1565 59.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19182-PA 2565 GL19182-PA 949..1370 63..484 1732 74.2 Plus
Dper\GL24850-PA 469 GL24850-PA 8..468 23..483 1673 65.7 Plus
Dper\GL13348-PA 537 GL13348-PA 153..510 24..381 1232 62.8 Plus
Dper\GL15602-PA 264 GL15602-PA 1..264 222..484 904 63.3 Plus
Dper\GL20991-PA 174 GL20991-PA 1..174 311..484 707 72.4 Plus
Dper\GL13348-PA 537 GL13348-PA 29..142 17..131 371 59.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25872-PA 2547 GA25872-PA 949..1370 63..484 1727 73.7 Plus
Dpse\GA23530-PA 469 GA23530-PA 8..468 23..483 1673 65.7 Plus
Dpse\GA22866-PA 496 GA22866-PA 29..496 17..484 1607 61 Plus
Dpse\GA17953-PA 500 GA17953-PA 40..500 24..484 1602 63.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12511-PA 495 GM12511-PA 28..495 17..484 1608 61.6 Plus
Dsec\GM12512-PA 499 GM12512-PA 39..499 24..484 1587 61.2 Plus
Dsec\GM24753-PA 410 GM24753-PA 152..409 226..483 967 66.7 Plus
Dsec\GM24753-PA 410 GM24753-PA 8..138 22..152 440 61.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22301-PA 1702 GD22301-PA 1..361 12..372 1922 98.1 Plus
Dsim\GD12804-PA 148 GD12804-PA 29..147 360..483 358 58.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11232-PA 484 GJ11232-PA 1..483 1..483 1792 67.5 Plus
Dvir\GJ11233-PA 476 GJ11233-PA 13..475 21..483 1631 63.5 Plus
Dvir\GJ16987-PA 496 GJ16987-PA 29..496 17..484 1604 60.8 Plus
Dvir\GJ16988-PA 500 GJ16988-PA 40..500 24..484 1583 61.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15449-PA 500 GK15449-PA 40..500 24..484 1598 62.1 Plus
Dwil\GK15460-PA 455 GK15460-PA 1..455 30..484 1539 63.3 Plus
Dwil\GK17051-PA 455 GK17051-PA 7..446 24..475 1099 48.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20216-PA 470 GE20216-PA 8..469 22..483 1650 64.5 Plus
Dyak\GE16764-PA 495 GE16764-PA 28..495 17..484 1607 61.6 Plus
Dyak\GE16765-PA 500 GE16765-PA 40..500 24..484 1581 61.2 Plus

AT27305.hyp Sequence

Translation from 72 to 1526

> AT27305.hyp
MSFDQKEIFSLMYKLARLIVPDTRVEYDSMGAVHIPLDRMFGPQTMRSLM
KFPIGGVEERMPRPLIKALGIVKKSAAETNKIHCLEEHLCDAISKACDDV
ISGKLYDEEHFPLVIWQDGSGEHTNMNVNEVICNRAIEILGGQMGSKEPV
DPNEHVNMAQSSHDTFSTAVRIAVAMQLQETLYPSLRTFIDLLGKKSNDW
MDLIKIGRTHLMDAVPLSLGQEFSGYQQQLVNGRTRLDCAMCRLYQLPMG
GTSVGTKVDTKAEYSAQCIKRIAELTFLPFVESPNFFESISACDCLVELH
GELNTIAASVMKIANDIRFLGSGPRCGFGELHLPENEPGSSIMPGKVNPT
QCEAMSMICAQVMGNHVAVSMGGSSGHFQLNTFMPMIASNVLRSITLLGD
GMKSFCTNCLEGIEPNRSKIGSIVKESLMLVTALSPHIGYERSAAIAKAA
HHNGTTLEQEAILDGIQREDFREWVQPSKMLGPE*

AT27305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31874-PA 484 CG31874-PA 1..484 1..484 2525 100 Plus
CG6140-PB 470 CG6140-PB 8..469 22..483 1591 64.7 Plus
CG6140-PA 470 CG6140-PA 8..469 22..483 1591 64.7 Plus
l(1)G0255-PA 495 CG4094-PA 28..495 17..484 1531 61.6 Plus
l(1)G0255-PB 467 CG4094-PB 7..467 24..484 1526 62.1 Plus