AT27792.complete Sequence
1492 bp (1492 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089466
> AT27792.complete
ATTACTTTTGACTTTCGGACATAAATTCAGTGTAATCTTAAGTGAAATTG
TTGAAACAATTTGTTGTTTGTGCAAATGAACATTAGGGGAAATCAAGAAG
TTGGCTTGCGGTGTCGATTTAGTGATCTCTGTAACTTTTGTGTCCGTGTG
GATGAGTTTACTATCCTGATGATCCTGCCACCAATTACTCCGCCGCATTT
GTAAATAAGCACAAGCGACAGCAACCCGTCCAGCAGCTCCGATCCCGCCG
CCACGCTCATACCTCCGGGCAGGGACATCAGCAGCACCCGCTTCTGCCTC
CGCTCGCCTTGCTGCCAAGGTGCCTGGTGCCCCAGTCGTCGGATTGGTCT
CACACACCGGAAGCAGCAACATAAGCCAACCTCCGTCAGTCACCAAGAAG
AGCTCCCTGTCCAGCCGTAAGCTTGGAGGTGGCAAAACCACAGATTCCAG
CATCAAGCGGCGCGTAAAGTTCTCGGCAAATGTGCACACATTCCCTTCCC
TTACAAACACCAAGAAGTCCACCCGGATTGGCGAGCTACAGCTGAAGAAG
AAGGTAAAGAAGCTGAAGCGGATCCGATCGCGTCGGGAGGGCGGAAGTGG
TGAGACAGCGCGTGATCTCCTTAACTCAAGTGGTATAGCCGCAAGTAATC
TGGACATTTACAAACACGGCGTTATCGTTGATGTGGAACCAGTTAAAACA
CCAGAACCACCACGTGTTCTGCGCCTAAACGTTGTGGGCAAATCATCGCC
GGCGACGGGAAAATCTGCATTAATAACAGCGCTGCGGCGTAAGGCTAAAA
GATCAGCAGAACAGGAAGAAAAGTCCAAAGAATCTATAGCTACTGCTACA
GGTAGTAGGACCGGAAAGCCCAAGACAAAGACGATCAGAAAAAGTGGTGG
TAGCAGCGCGAAGACTCTGCTCGCATCCAGCTCTCATTTGGTGGATAGTA
GGGCTGGCTTAGAGGGGAGGAAGAAATCAGTAGTAACGGCGGCAACTGCC
AGTCAGCGGGTTAGTCATAAACAAAAACAAAATGGGCGGCGAGGCCATGG
AAAAATCTGAAGGCGGCGATCAGCCGGAGAGTGCTGGCGAGAAGGAGCAG
GTGCATCAAGGAGCAGACCAACAGGTTCAACGGGAAAAGCGTCGTCGAAG
TGTGTCTCCTGATGGGGGCGATGTAGGCAGTGTAAAGATGGCTGATGTGG
TTTTAGAAGGCGCATCGGATGTTGCCGTAACTAAGAAGCGGGTAAACATT
AACCACAACACATCATCATCGCATCGCCACTCTTGTTTTCCTCACAAAAT
AGATTCTCACTCGGCCGATTCGATACGTATTCTTGGCAACAGTTGTACAG
TTGACGGTGCTCTGCTAAAGCCGAAAAAACGCCACTCAACGCCACACAGC
GAATGCTAATACATTTTGATGAAACAGTCGAAATTGTTTAGTCTAATAAA
AGAGGAAATAATATACTAAAGCAAAAAAAAAAAAAAAAAAAA
AT27792.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33937-RA | 1478 | CG33937-RA | 1..1475 | 1..1475 | 7375 | 100 | Plus |
CG33937-RB | 1537 | CG33937-RB | 267..1534 | 208..1475 | 6340 | 100 | Plus |
CG33937.a | 1417 | CG33937.a | 1..1241 | 1..1241 | 6205 | 100 | Plus |
CG33937-RB | 1537 | CG33937-RB | 1..209 | 1..209 | 1045 | 100 | Plus |
CG33937.a | 1417 | CG33937.a | 1241..1414 | 1302..1475 | 870 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 5182185..5183449 | 208..1472 | 6325 | 100 | Plus |
chr3R | 27901430 | chr3R | 5181258..5181466 | 1..209 | 1045 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9356422..9357689 | 208..1475 | 6340 | 100 | Plus |
3R | 32079331 | 3R | 9355495..9355703 | 1..209 | 1045 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 9097253..9098520 | 208..1475 | 6340 | 100 | Plus |
3R | 31820162 | 3R | 9096326..9096534 | 1..209 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 07:17:57 has no hits.
AT27792.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:18:45 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 5181258..5181466 | 1..209 | 100 | -> | Plus |
chr3R | 5182187..5183449 | 210..1472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:02 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33936-RC | 264..1075 | 204..1017 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:19 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33936-RC | 264..1075 | 204..1017 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:13 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43675-RB | 264..1119 | 204..1060 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:13:46 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33936-RC | 264..1075 | 204..1017 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:29:36 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43675-RC | 264..1119 | 204..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:46 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33937-RA | 1..1472 | 1..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:19 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33937-RA | 1..1472 | 1..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:13 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33937-RA | 1..1472 | 1..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:13:47 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33937-RA | 1..1472 | 1..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:29:36 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43675-RC | 1..208 | 1..208 | 100 | -> | Plus |
CG43675-RC | 562..1820 | 209..1467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:45 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9355495..9355703 | 1..209 | 100 | -> | Plus |
3R | 9356424..9357686 | 210..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:45 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9355495..9355703 | 1..209 | 100 | -> | Plus |
3R | 9356424..9357686 | 210..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:45 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9355495..9355703 | 1..209 | 100 | -> | Plus |
3R | 9356424..9357686 | 210..1472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:13 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5181217..5181425 | 1..209 | 100 | -> | Plus |
arm_3R | 5182146..5183408 | 210..1472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:40 Download gff for
AT27792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9096326..9096534 | 1..209 | 100 | -> | Plus |
3R | 9097255..9098517 | 210..1472 | 100 | | Plus |
AT27792.pep Sequence
Translation from 1031 to 1408
> AT27792.pep
MGGEAMEKSEGGDQPESAGEKEQVHQGADQQVQREKRRRSVSPDGGDVGS
VKMADVVLEGASDVAVTKKRVNINHNTSSSHRHSCFPHKIDSHSADSIRI
LGNSCTVDGALLKPKKRHSTPHSEC*
AT27792.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45050-PI | 183 | CG45050-PI | 1..70 | 1..70 | 351 | 100 | Plus |
CG45050-PH | 183 | CG45050-PH | 1..70 | 1..70 | 351 | 100 | Plus |
AT27792.hyp Sequence
Translation from 1031 to 1408
> AT27792.hyp
MGGEAMEKSEGGDQPESAGEKEQVHQGADQQVQREKRRRSVSPDGGDVGS
VKMADVVLEGASDVAVTKKRVNINHNTSSSHRHSCFPHKIDSHSADSIRI
LGNSCTVDGALLKPKKRHSTPHSEC*
AT27792.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45050-PI | 183 | CG45050-PI | 1..70 | 1..70 | 351 | 100 | Plus |
CG45050-PH | 183 | CG45050-PH | 1..70 | 1..70 | 351 | 100 | Plus |