Clone AT27831 Report

Search the DGRC for AT27831

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:278
Well:31
Vector:pOTB7
Associated Gene/TranscriptCG31538-RA
Protein status:AT27831.pep: gold
Sequenced Size:2182

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31538 2002-09-18 Blastp of sequenced clone
CG31538 2003-01-01 Sim4 clustering to Release 3
CG31538 2008-04-29 Release 5.5 accounting
CG31538 2008-08-15 Release 5.9 accounting
CG31538 2008-12-18 5.12 accounting

Clone Sequence Records

AT27831.complete Sequence

2182 bp (2182 high quality bases) assembled on 2002-09-18

GenBank Submission: BT001356

> AT27831.complete
CGTTGTCTCTGCCTTCAACGCCTTTCATATGGGGATTCGTTGAGCACTTT
CATTTCGTTGCCAGTCGTTGTTTTATTTCGTTTCGTACAGAGCTCTCCAA
AATAGAAAATTCGAATTTATTTATTCAGTGTTTTGTTGGTCTTACGAGTC
CGTGAAATCGAGTTCTTTAGTCCGTGAAGAAACGTGCTTCGTTTTCGCAG
GTTTTTGCTAAATTGTTCGTGTATCCATTGGTTCACATTATGAGTACTCA
TCAGTATAGCCTGGGGAGGCTGGCCCGCCGAGGCTTCAGCCTGCGGATGA
ATCCGCTGGCCGGCACACTGCAAAGGCTTTACCACACCCGTAGCAGGCCA
TGTGTGGCCCAGAGTGTGAGCCAGGTGGGTGAACGGTCCAAGCCAACGTT
GCAGCCCTACGACTTCGACCGAAGCCGGGTGCGTAAAATTGCCGGCGAGA
GGAAGACGCTGGTCGACCAGGTGCGGGGCATGAGCACAAGCCTGGGACAT
GCCAAGTTGGTGCCCCAAAAGATGTACGGCAAGACGAGGCTGTTCTCCTC
CGGAAGCACCCTCTACAGTCGCTTGCAGCATCTGGAACAGCAGAACGAGG
AATATTCGAGTCGAGAGTCCCAGCCGACGCACACCACAGCCTCATTGTCG
GCCACCCAGCAGAGGTACAATCAGGCGGCAGGATTCGGCAAGGGCATGGC
CATACAGACGGCCAAAGACATCAGCCAGTCCATCCAGGAGGAGCTGATGG
TGGTGGACGCCGACACGCGCGACATGCTTACCTGCGATACCAGTCGCAAG
GCGATGCGCGACTACCACGACCATATGGCCAAGCGGTCGAAGAACTCTGT
CGATCCCATGCAGGGTTGGAAGCATCCAAAGAACCTTAAGTATCTCTCCG
ATATCCCGGCCGATAGCAGTACCAGTAGCCAAGCAGCCCAACATGACGAT
GAAGCCCAACGGCAGATGAGGCCACGTCGCCGCCAGATGGTCATGGGTCA
TGCCATTCGCAATTTCGACGCCCTAGCCAATCCCCCGCTTCATCTCGGCA
CCGGACCCAGGTACGAGATGTATACCTCCAATGCTAAGGAGATGTTCTCA
GAGCATCGCAGCGAGCTGCGTCCGCAGACAAGTTGGCACAAGCCAAAGCC
AGCCGCCGAGGACAAGCCCGAGGATCAGCTTATGGACGTGTCGATGATCC
GACCAGAGCGTCCGGATATTACAGTGGCCAGGGGCCTCTGGAAGAACGAG
GAGGACACACCCGAGCCGGATTCGTGGTACGAGCAGCCCAAAGCAGAGCG
CGAGTTCTTAAAGCAGGCCTTCCTCGGCGGAGCCAAGAGTCGCCGGAAGG
TGGGACAGTCCCAGTTGGACGAACTCTACCACGAGTCGTCGGACAATGCG
GCCCAGATTAGTGCCTCACAGCAGGTGATTAAACAGAAGTACGCCGGCTT
CCGCGGGTCGGCAAGGGGAAATCAGAAGCAAATTGTAGAGTCAGTGAATC
CGACGCCGCAGCTTAAGCCTCATCAAAGGACCTTTCCGGAGCCCCGGGAC
AAGCGCAAAAGACGTGGAACTGCAAACCAGGCCGTCGAACGACAGGCTGC
ACCACGCTTTTATGCGGGGAACAGCCAACCAGCTGCGAAAGAAGATGAGG
ATAATAAGGAGGGGAACTCCAGAGAGTCCAATTGGCCGTCGCCCAGTAAC
TCGGTGCTCCCGTCATCCTCGCGAAGCGAGTCTCGCCTTCAAACTGAGCG
CAGGGCACGTGGGCAGGGTGTCATGGGCGAGAGGCGAACCACCAAGAACT
CGATGGAGACTGAAACCGCCGCGGAGGATAGCGATATCGCTATGTCGCCA
GGTTACAAGAAGGAGTCGGCAGTCCAACGCCTGGGAAAAGCTGCTTCCAG
GCACAACAGCCGCGCCTTCAACAGCTACTGAGTCTCCAAGTTCCATCGCA
GGTGTGAGGTCGTGACCTCTGCCTTCTGAAAATTCACTCTAATTCCGATT
CACGGTCATAATTCTCCCGGTCCTACAAAAGAAACTTTTACATTCGCTGT
CAAAATCCTTAAATGTCAACAAAATTGAGGCCCGGAAATCCTGCTGGCTA
AGTGTAGTATTATAATCGCATAACTAAAGTAATTTAAATAAAACCTTTTA
CAGTTGCGAAAAAAAAAAAAAAAAAAAAAAAA

AT27831.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31538-RA 2164 CG31538-RA 1..2164 1..2164 10820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1101342..1103499 2158..1 10790 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5275671..5277835 2165..1 10825 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5016502..5018666 2165..1 10825 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:27:09 has no hits.

AT27831.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:27:50 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1101342..1103499 1..2158 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:05 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..1692 240..1931 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:15:01 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..1692 240..1931 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:43:22 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..1692 240..1931 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:59 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..1692 240..1931 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:00:15 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..1692 240..1931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:38:23 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:15:01 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:43:22 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:59 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..2158 1..2158 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:00:15 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
CG31538-RA 1..2158 1..2158 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:50 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5275678..5277835 1..2158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:50 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5275678..5277835 1..2158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:50 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5275678..5277835 1..2158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:43:22 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1101400..1103557 1..2158 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:53 Download gff for AT27831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5016509..5018666 1..2158 100   Minus

AT27831.pep Sequence

Translation from 239 to 1930

> AT27831.pep
MSTHQYSLGRLARRGFSLRMNPLAGTLQRLYHTRSRPCVAQSVSQVGERS
KPTLQPYDFDRSRVRKIAGERKTLVDQVRGMSTSLGHAKLVPQKMYGKTR
LFSSGSTLYSRLQHLEQQNEEYSSRESQPTHTTASLSATQQRYNQAAGFG
KGMAIQTAKDISQSIQEELMVVDADTRDMLTCDTSRKAMRDYHDHMAKRS
KNSVDPMQGWKHPKNLKYLSDIPADSSTSSQAAQHDDEAQRQMRPRRRQM
VMGHAIRNFDALANPPLHLGTGPRYEMYTSNAKEMFSEHRSELRPQTSWH
KPKPAAEDKPEDQLMDVSMIRPERPDITVARGLWKNEEDTPEPDSWYEQP
KAEREFLKQAFLGGAKSRRKVGQSQLDELYHESSDNAAQISASQQVIKQK
YAGFRGSARGNQKQIVESVNPTPQLKPHQRTFPEPRDKRKRRGTANQAVE
RQAAPRFYAGNSQPAAKEDEDNKEGNSRESNWPSPSNSVLPSSSRSESRL
QTERRARGQGVMGERRTTKNSMETETAAEDSDIAMSPGYKKESAVQRLGK
AASRHNSRAFNSY*

AT27831.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11100-PA 565 GG11100-PA 1..565 1..563 2191 76 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31538-PA 563 CG31538-PA 1..563 1..563 2919 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10649-PA 562 GM10649-PA 1..562 1..563 2557 88.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25298-PA 566 GE25298-PA 1..566 1..563 2068 73.9 Plus
Dyak\GE25297-PA 130 GE25297-PA 3..130 434..563 463 71.5 Plus

AT27831.hyp Sequence

Translation from 239 to 1930

> AT27831.hyp
MSTHQYSLGRLARRGFSLRMNPLAGTLQRLYHTRSRPCVAQSVSQVGERS
KPTLQPYDFDRSRVRKIAGERKTLVDQVRGMSTSLGHAKLVPQKMYGKTR
LFSSGSTLYSRLQHLEQQNEEYSSRESQPTHTTASLSATQQRYNQAAGFG
KGMAIQTAKDISQSIQEELMVVDADTRDMLTCDTSRKAMRDYHDHMAKRS
KNSVDPMQGWKHPKNLKYLSDIPADSSTSSQAAQHDDEAQRQMRPRRRQM
VMGHAIRNFDALANPPLHLGTGPRYEMYTSNAKEMFSEHRSELRPQTSWH
KPKPAAEDKPEDQLMDVSMIRPERPDITVARGLWKNEEDTPEPDSWYEQP
KAEREFLKQAFLGGAKSRRKVGQSQLDELYHESSDNAAQISASQQVIKQK
YAGFRGSARGNQKQIVESVNPTPQLKPHQRTFPEPRDKRKRRGTANQAVE
RQAAPRFYAGNSQPAAKEDEDNKEGNSRESNWPSPSNSVLPSSSRSESRL
QTERRARGQGVMGERRTTKNSMETETAAEDSDIAMSPGYKKESAVQRLGK
AASRHNSRAFNSY*

AT27831.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31538-PA 563 CG31538-PA 1..563 1..563 2919 100 Plus