Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT27831.complete Sequence
2182 bp (2182 high quality bases) assembled on 2002-09-18
GenBank Submission: BT001356
> AT27831.complete
CGTTGTCTCTGCCTTCAACGCCTTTCATATGGGGATTCGTTGAGCACTTT
CATTTCGTTGCCAGTCGTTGTTTTATTTCGTTTCGTACAGAGCTCTCCAA
AATAGAAAATTCGAATTTATTTATTCAGTGTTTTGTTGGTCTTACGAGTC
CGTGAAATCGAGTTCTTTAGTCCGTGAAGAAACGTGCTTCGTTTTCGCAG
GTTTTTGCTAAATTGTTCGTGTATCCATTGGTTCACATTATGAGTACTCA
TCAGTATAGCCTGGGGAGGCTGGCCCGCCGAGGCTTCAGCCTGCGGATGA
ATCCGCTGGCCGGCACACTGCAAAGGCTTTACCACACCCGTAGCAGGCCA
TGTGTGGCCCAGAGTGTGAGCCAGGTGGGTGAACGGTCCAAGCCAACGTT
GCAGCCCTACGACTTCGACCGAAGCCGGGTGCGTAAAATTGCCGGCGAGA
GGAAGACGCTGGTCGACCAGGTGCGGGGCATGAGCACAAGCCTGGGACAT
GCCAAGTTGGTGCCCCAAAAGATGTACGGCAAGACGAGGCTGTTCTCCTC
CGGAAGCACCCTCTACAGTCGCTTGCAGCATCTGGAACAGCAGAACGAGG
AATATTCGAGTCGAGAGTCCCAGCCGACGCACACCACAGCCTCATTGTCG
GCCACCCAGCAGAGGTACAATCAGGCGGCAGGATTCGGCAAGGGCATGGC
CATACAGACGGCCAAAGACATCAGCCAGTCCATCCAGGAGGAGCTGATGG
TGGTGGACGCCGACACGCGCGACATGCTTACCTGCGATACCAGTCGCAAG
GCGATGCGCGACTACCACGACCATATGGCCAAGCGGTCGAAGAACTCTGT
CGATCCCATGCAGGGTTGGAAGCATCCAAAGAACCTTAAGTATCTCTCCG
ATATCCCGGCCGATAGCAGTACCAGTAGCCAAGCAGCCCAACATGACGAT
GAAGCCCAACGGCAGATGAGGCCACGTCGCCGCCAGATGGTCATGGGTCA
TGCCATTCGCAATTTCGACGCCCTAGCCAATCCCCCGCTTCATCTCGGCA
CCGGACCCAGGTACGAGATGTATACCTCCAATGCTAAGGAGATGTTCTCA
GAGCATCGCAGCGAGCTGCGTCCGCAGACAAGTTGGCACAAGCCAAAGCC
AGCCGCCGAGGACAAGCCCGAGGATCAGCTTATGGACGTGTCGATGATCC
GACCAGAGCGTCCGGATATTACAGTGGCCAGGGGCCTCTGGAAGAACGAG
GAGGACACACCCGAGCCGGATTCGTGGTACGAGCAGCCCAAAGCAGAGCG
CGAGTTCTTAAAGCAGGCCTTCCTCGGCGGAGCCAAGAGTCGCCGGAAGG
TGGGACAGTCCCAGTTGGACGAACTCTACCACGAGTCGTCGGACAATGCG
GCCCAGATTAGTGCCTCACAGCAGGTGATTAAACAGAAGTACGCCGGCTT
CCGCGGGTCGGCAAGGGGAAATCAGAAGCAAATTGTAGAGTCAGTGAATC
CGACGCCGCAGCTTAAGCCTCATCAAAGGACCTTTCCGGAGCCCCGGGAC
AAGCGCAAAAGACGTGGAACTGCAAACCAGGCCGTCGAACGACAGGCTGC
ACCACGCTTTTATGCGGGGAACAGCCAACCAGCTGCGAAAGAAGATGAGG
ATAATAAGGAGGGGAACTCCAGAGAGTCCAATTGGCCGTCGCCCAGTAAC
TCGGTGCTCCCGTCATCCTCGCGAAGCGAGTCTCGCCTTCAAACTGAGCG
CAGGGCACGTGGGCAGGGTGTCATGGGCGAGAGGCGAACCACCAAGAACT
CGATGGAGACTGAAACCGCCGCGGAGGATAGCGATATCGCTATGTCGCCA
GGTTACAAGAAGGAGTCGGCAGTCCAACGCCTGGGAAAAGCTGCTTCCAG
GCACAACAGCCGCGCCTTCAACAGCTACTGAGTCTCCAAGTTCCATCGCA
GGTGTGAGGTCGTGACCTCTGCCTTCTGAAAATTCACTCTAATTCCGATT
CACGGTCATAATTCTCCCGGTCCTACAAAAGAAACTTTTACATTCGCTGT
CAAAATCCTTAAATGTCAACAAAATTGAGGCCCGGAAATCCTGCTGGCTA
AGTGTAGTATTATAATCGCATAACTAAAGTAATTTAAATAAAACCTTTTA
CAGTTGCGAAAAAAAAAAAAAAAAAAAAAAAA
AT27831.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31538-RA | 2164 | CG31538-RA | 1..2164 | 1..2164 | 10820 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 1101342..1103499 | 2158..1 | 10790 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5275671..5277835 | 2165..1 | 10825 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 5016502..5018666 | 2165..1 | 10825 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 12:27:09 has no hits.
AT27831.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:27:50 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 1101342..1103499 | 1..2158 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:05 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..1692 | 240..1931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:15:01 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..1692 | 240..1931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:43:22 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..1692 | 240..1931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:59 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..1692 | 240..1931 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:00:15 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..1692 | 240..1931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:38:23 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..2158 | 1..2158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:15:01 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..2158 | 1..2158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:43:22 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..2158 | 1..2158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:59 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..2158 | 1..2158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:00:15 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31538-RA | 1..2158 | 1..2158 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:50 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5275678..5277835 | 1..2158 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:50 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5275678..5277835 | 1..2158 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:50 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5275678..5277835 | 1..2158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:43:22 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1101400..1103557 | 1..2158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:53 Download gff for
AT27831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5016509..5018666 | 1..2158 | 100 | | Minus |
AT27831.pep Sequence
Translation from 239 to 1930
> AT27831.pep
MSTHQYSLGRLARRGFSLRMNPLAGTLQRLYHTRSRPCVAQSVSQVGERS
KPTLQPYDFDRSRVRKIAGERKTLVDQVRGMSTSLGHAKLVPQKMYGKTR
LFSSGSTLYSRLQHLEQQNEEYSSRESQPTHTTASLSATQQRYNQAAGFG
KGMAIQTAKDISQSIQEELMVVDADTRDMLTCDTSRKAMRDYHDHMAKRS
KNSVDPMQGWKHPKNLKYLSDIPADSSTSSQAAQHDDEAQRQMRPRRRQM
VMGHAIRNFDALANPPLHLGTGPRYEMYTSNAKEMFSEHRSELRPQTSWH
KPKPAAEDKPEDQLMDVSMIRPERPDITVARGLWKNEEDTPEPDSWYEQP
KAEREFLKQAFLGGAKSRRKVGQSQLDELYHESSDNAAQISASQQVIKQK
YAGFRGSARGNQKQIVESVNPTPQLKPHQRTFPEPRDKRKRRGTANQAVE
RQAAPRFYAGNSQPAAKEDEDNKEGNSRESNWPSPSNSVLPSSSRSESRL
QTERRARGQGVMGERRTTKNSMETETAAEDSDIAMSPGYKKESAVQRLGK
AASRHNSRAFNSY*
AT27831.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG11100-PA | 565 | GG11100-PA | 1..565 | 1..563 | 2191 | 76 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31538-PA | 563 | CG31538-PA | 1..563 | 1..563 | 2919 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10649-PA | 562 | GM10649-PA | 1..562 | 1..563 | 2557 | 88.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25298-PA | 566 | GE25298-PA | 1..566 | 1..563 | 2068 | 73.9 | Plus |
Dyak\GE25297-PA | 130 | GE25297-PA | 3..130 | 434..563 | 463 | 71.5 | Plus |
AT27831.hyp Sequence
Translation from 239 to 1930
> AT27831.hyp
MSTHQYSLGRLARRGFSLRMNPLAGTLQRLYHTRSRPCVAQSVSQVGERS
KPTLQPYDFDRSRVRKIAGERKTLVDQVRGMSTSLGHAKLVPQKMYGKTR
LFSSGSTLYSRLQHLEQQNEEYSSRESQPTHTTASLSATQQRYNQAAGFG
KGMAIQTAKDISQSIQEELMVVDADTRDMLTCDTSRKAMRDYHDHMAKRS
KNSVDPMQGWKHPKNLKYLSDIPADSSTSSQAAQHDDEAQRQMRPRRRQM
VMGHAIRNFDALANPPLHLGTGPRYEMYTSNAKEMFSEHRSELRPQTSWH
KPKPAAEDKPEDQLMDVSMIRPERPDITVARGLWKNEEDTPEPDSWYEQP
KAEREFLKQAFLGGAKSRRKVGQSQLDELYHESSDNAAQISASQQVIKQK
YAGFRGSARGNQKQIVESVNPTPQLKPHQRTFPEPRDKRKRRGTANQAVE
RQAAPRFYAGNSQPAAKEDEDNKEGNSRESNWPSPSNSVLPSSSRSESRL
QTERRARGQGVMGERRTTKNSMETETAAEDSDIAMSPGYKKESAVQRLGK
AASRHNSRAFNSY*
AT27831.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31538-PA | 563 | CG31538-PA | 1..563 | 1..563 | 2919 | 100 | Plus |