Clone AT27838 Report

Search the DGRC for AT27838

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:278
Well:38
Vector:pOTB7
Associated Gene/TranscriptCG14609-RA
Protein status:AT27838.pep: gold
Preliminary Size:1764
Sequenced Size:2011

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14609 2002-01-01 Sim4 clustering to Release 2
CG14609 2002-01-18 Blastp of sequenced clone
CG14609 2003-01-01 Sim4 clustering to Release 3
CG14609 2008-04-29 Release 5.5 accounting
CG14609 2008-08-15 Release 5.9 accounting
CG14609 2008-12-18 5.12 accounting

Clone Sequence Records

AT27838.complete Sequence

2011 bp (2011 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089467

> AT27838.complete
CTATGATAGTGTCAAACATATATTTTTCTTCTATTGATCACATCCACACG
AGAATCGAAGGTGCAATAAGCTCTATTAAATCACAATTTAGCGAAGAGCC
CCCAAAGTCACTTAACCATTCAACATGCCGCCGTGTACTTTGCGCCAGAG
AGGCATGGCCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTT
TGGCCCCCAAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTT
GGCATGTCGTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCC
CAATTCCCTAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTC
GTTTGGTGTTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTT
CGAGAGAACAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATT
ACAGAATATTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCA
TCAACCATAAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTG
GTCGTGGACAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGA
TCGTTTGGAGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGC
TGCTGCGTAGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTT
ATTCTCGACGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAA
TTCGAATGTGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAA
AGATGATACAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTG
CGCTCCCTTAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATAT
CCTCTTCCTGGGCATGCCGGCGATTGCGAAGTTCAAGGAGTTGAACGATG
AGTTCCGAAACATGGAGGAGAAATCCCGGAAAAACCTGCAGCATAAATTG
CAAATGCTGTCCGCTCTAAAGAAACCGGCAGGTACATCGATTGCTAATTT
CAATAAGCCCAAGGAGGCGGCTCCAACGACGAATCTGAAGCGATATGTTC
GGGAAACTCAGAGCATGATGATTCTAAAACTGGAGCTAAAGGCTGTGGAA
AAGACAATCAAGGAGGTTAAGTTTGTGACACTCTGTTCGCAGGCCAAGGA
AATTTATCCACGAATGAAGAGCCAGGTGGACAACAATGATAAACTGCATC
GTATGATTGTCAATGACATGTTGGCTCATGAAATGCTGGAAACCAAGATG
AAGTGCGCCAGTGTCTTGAAAGGGGTGCTGATCAACAATCTGTCAGAGGA
AGAGATTAATCGCTTGGAGCGCATTAAGGACCTAAAGAAAACGCTTCAAA
ATGACATCCAATTTGAACAAGATACTTTGCAACATCTTAAGAACAGAGCT
GATGCATATGTATTGTTGAGAGTTAGCATTTGGAATCTTTTGGAGATCCT
TCGTCACATTGATCGCCAGCCCAAATTACTACGTGCGCAGTATCCCAACT
CGTACTTGAAGCTCCCGTTGCTAAAATTCGAAATGCTGAACATGAGGGCT
GCTGCCCCAGAGATTTTCGAGGAGAATATTGATAACATAATGCATATGGT
GAAGCGTAAGATCTACAAGCTGATGAAGGCTTATGCAGTTGAGCTCAAAC
CGGCGACCATCAAGCGAAATGTCGAGGAATACCATGCCGACTTCCTGGCC
AGCCTAGATATGTACGAGCCAGTGGATAATGAAGAGCAGGCTCCAACAGC
TCCCGAGGATGACATCCTGCAGGAGAACAAGACCATGGCCAATGTACCCA
ACCGCAAACAAATCAAGGCCCAAAGTGCCAAGCTTGTGGAGGAGCTGGCC
AAGCGGGATGAAATGTAAATGTTTTGTTAGGTATTCGATTTGCAGCTGTT
GCAGATAAAATTTGAAGTAACTTAAATTTTGCATGCTAAAAACAAAAAAA
AAAAAAAAAAA

AT27838.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-RA 2146 CG14609-RA 43..2051 1..2009 10015 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3027816..3028376 652..1212 2805 100 Plus
chr3R 27901430 chr3R 3029056..3029420 1629..1993 1810 99.7 Plus
chr3R 27901430 chr3R 3027028..3027371 1..344 1720 100 Plus
chr3R 27901430 chr3R 3027433..3027740 345..652 1540 100 Plus
chr3R 27901430 chr3R 3028839..3028998 1469..1628 800 100 Plus
chr3R 27901430 chr3R 3028438..3028585 1212..1359 740 100 Plus
chr3R 27901430 chr3R 3028638..3028752 1356..1470 560 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7201758..7202318 652..1212 2790 99.8 Plus
3R 32079331 3R 7202998..7203378 1629..2009 1890 99.7 Plus
3R 32079331 3R 7200970..7201313 1..344 1720 100 Plus
3R 32079331 3R 7201375..7201682 345..652 1540 100 Plus
3R 32079331 3R 7202781..7202940 1469..1628 800 100 Plus
3R 32079331 3R 7202380..7202527 1212..1359 740 100 Plus
3R 32079331 3R 7202580..7202694 1356..1470 560 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6942589..6943149 652..1212 2790 99.8 Plus
3R 31820162 3R 6943829..6944209 1629..2009 1890 99.7 Plus
3R 31820162 3R 6941801..6942144 1..344 1720 100 Plus
3R 31820162 3R 6942206..6942513 345..652 1540 100 Plus
3R 31820162 3R 6943612..6943771 1469..1628 800 100 Plus
3R 31820162 3R 6943211..6943358 1212..1359 740 100 Plus
3R 31820162 3R 6943411..6943525 1356..1470 560 99.1 Plus
Blast to na_te.dros performed on 2019-03-16 13:22:35 has no hits.

AT27838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:23:25 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3027028..3027371 1..344 100 -> Plus
chr3R 3027433..3027740 345..652 100 -> Plus
chr3R 3027817..3028376 653..1212 100 -> Plus
chr3R 3028439..3028585 1213..1359 100 -> Plus
chr3R 3028642..3028752 1360..1470 100 -> Plus
chr3R 3028841..3028998 1471..1628 100 -> Plus
chr3R 3029056..3029420 1629..1993 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:07 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1794 125..1918 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:21 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1794 125..1918 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:33 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1794 125..1918 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:13:49 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1794 125..1918 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:12:58 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1794 125..1918 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:48 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1993 1..1993 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:21 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1993 1..1993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:33 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1993 1..1993 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:13:50 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1993 1..1993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:58 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1..1993 1..1993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:25 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7200970..7201313 1..344 100 -> Plus
3R 7201375..7201682 345..652 100 -> Plus
3R 7201759..7202318 653..1212 99 -> Plus
3R 7202381..7202527 1213..1359 100 -> Plus
3R 7202584..7202694 1360..1470 100 -> Plus
3R 7202783..7202940 1471..1628 100 -> Plus
3R 7202998..7203362 1629..1993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:25 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7200970..7201313 1..344 100 -> Plus
3R 7201375..7201682 345..652 100 -> Plus
3R 7201759..7202318 653..1212 99 -> Plus
3R 7202381..7202527 1213..1359 100 -> Plus
3R 7202584..7202694 1360..1470 100 -> Plus
3R 7202783..7202940 1471..1628 100 -> Plus
3R 7202998..7203362 1629..1993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:25 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7200970..7201313 1..344 100 -> Plus
3R 7201375..7201682 345..652 100 -> Plus
3R 7201759..7202318 653..1212 99 -> Plus
3R 7202381..7202527 1213..1359 100 -> Plus
3R 7202584..7202694 1360..1470 100 -> Plus
3R 7202783..7202940 1471..1628 100 -> Plus
3R 7202998..7203362 1629..1993 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:33 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3028505..3028662 1471..1628 100 -> Plus
arm_3R 3028103..3028249 1213..1359 100 -> Plus
arm_3R 3028306..3028416 1360..1470 100 -> Plus
arm_3R 3026692..3027035 1..344 100 -> Plus
arm_3R 3027097..3027404 345..652 100 -> Plus
arm_3R 3027481..3028040 653..1212 99 -> Plus
arm_3R 3028720..3029084 1629..1993 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:41 Download gff for AT27838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6943829..6944193 1629..1993 99   Plus
3R 6941801..6942144 1..344 100 -> Plus
3R 6942206..6942513 345..652 100 -> Plus
3R 6942590..6943149 653..1212 99 -> Plus
3R 6943212..6943358 1213..1359 100 -> Plus
3R 6943415..6943525 1360..1470 100 -> Plus
3R 6943614..6943771 1471..1628 100 -> Plus

AT27838.pep Sequence

Translation from 124 to 1917

> AT27838.pep
MPPCTLRQRGMAYIPRRDKNREKDVLAPKPVHPRSLRFHGFFGMSYVHQH
VMVDERWTPNSLTEQFKGMTDLLTRRLVFKNHESKANRQRYFRENKRLKL
QCRDGRAKLQNILINDNTHKIRNFLINHKPLQRLYQKMPIHLVVDNINQR
TFVMRKERDRLEFRLDQLKQHYKEQLLRRALLQNRIKYQNEFILDEELKS
RVFLKKIENSNVRLKAIKTINNTYKKMIQVLVHDEIFYEPILRSLSSDMD
DQSNFIKHILFLGMPAIAKFKELNDEFRNMEEKSRKNLQHKLQMLSALKK
PAGTSIANFNKPKEAAPTTNLKRYVRETQSMMILKLELKAVEKTIKEVKF
VTLCSQAKEIYPRMKSQVDNNDKLHRMIVNDMLAHEMLETKMKCASVLKG
VLINNLSEEEINRLERIKDLKKTLQNDIQFEQDTLQHLKNRADAYVLLRV
SIWNLLEILRHIDRQPKLLRAQYPNSYLKLPLLKFEMLNMRAAAPEIFEE
NIDNIMHMVKRKIYKLMKAYAVELKPATIKRNVEEYHADFLASLDMYEPV
DNEEQAPTAPEDDILQENKTMANVPNRKQIKAQSAKLVEELAKRDEM*

AT27838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17662-PA 596 GF17662-PA 1..596 1..596 2961 93.1 Plus
Dana\GF17661-PA 479 GF17661-PA 178..479 295..596 1078 67.9 Plus
Dana\GF17661-PA 479 GF17661-PA 1..175 1..177 736 74 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13919-PA 597 GG13919-PA 1..597 1..597 3112 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18293-PA 594 GH18293-PA 2..594 3..596 2277 71.5 Plus
Dgri\GH18292-PA 594 GH18292-PA 2..593 3..596 1879 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-PB 597 CG14609-PB 1..597 1..597 3059 100 Plus
CG14609-PA 597 CG14609-PA 1..597 1..597 3059 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24103-PA 600 GI24103-PA 2..600 3..596 2265 71.3 Plus
Dmoj\GI24101-PA 592 GI24101-PA 2..591 3..596 1734 55.9 Plus
Dmoj\GI24102-PA 453 GI24102-PA 15..361 16..359 1046 57.6 Plus
Dmoj\GI24102-PA 453 GI24102-PA 350..449 483..593 165 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12428-PA 594 GL12428-PA 2..594 3..596 2760 87.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13108-PA 594 GA13108-PA 2..594 3..596 2755 86.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10941-PA 597 GM10941-PA 1..597 1..597 3141 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19920-PA 597 GD19920-PA 1..597 1..597 3147 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10251-PA 598 GJ10251-PA 2..598 3..596 2409 74.5 Plus
Dvir\GJ10926-PA 598 GJ10926-PA 2..598 3..596 2406 74.5 Plus
Dvir\GJ10925-PA 598 GJ10925-PA 2..597 3..596 1890 58 Plus
Dvir\GJ10250-PA 598 GJ10250-PA 2..597 3..596 1878 57.9 Plus
Dvir\GJ10922-PA 574 GJ10922-PA 1..573 26..596 1838 59.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14527-PA 594 GK14527-PA 2..594 3..596 2708 85.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24912-PA 597 GE24912-PA 1..597 1..597 3134 99 Plus

AT27838.hyp Sequence

Translation from 124 to 1917

> AT27838.hyp
MPPCTLRQRGMAYIPRRDKNREKDVLAPKPVHPRSLRFHGFFGMSYVHQH
VMVDERWTPNSLTEQFKGMTDLLTRRLVFKNHESKANRQRYFRENKRLKL
QCRDGRAKLQNILINDNTHKIRNFLINHKPLQRLYQKMPIHLVVDNINQR
TFVMRKERDRLEFRLDQLKQHYKEQLLRRALLQNRIKYQNEFILDEELKS
RVFLKKIENSNVRLKAIKTINNTYKKMIQVLVHDEIFYEPILRSLSSDMD
DQSNFIKHILFLGMPAIAKFKELNDEFRNMEEKSRKNLQHKLQMLSALKK
PAGTSIANFNKPKEAAPTTNLKRYVRETQSMMILKLELKAVEKTIKEVKF
VTLCSQAKEIYPRMKSQVDNNDKLHRMIVNDMLAHEMLETKMKCASVLKG
VLINNLSEEEINRLERIKDLKKTLQNDIQFEQDTLQHLKNRADAYVLLRV
SIWNLLEILRHIDRQPKLLRAQYPNSYLKLPLLKFEMLNMRAAAPEIFEE
NIDNIMHMVKRKIYKLMKAYAVELKPATIKRNVEEYHADFLASLDMYEPV
DNEEQAPTAPEDDILQENKTMANVPNRKQIKAQSAKLVEELAKRDEM*

AT27838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-PB 597 CG14609-PB 1..597 1..597 3059 100 Plus
CG14609-PA 597 CG14609-PA 1..597 1..597 3059 100 Plus