Clone AT27896 Report

Search the DGRC for AT27896

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:278
Well:96
Vector:pOTB7
Associated Gene/TranscriptCG32396-RA
Protein status:AT27896.pep: gold
Preliminary Size:5467
Sequenced Size:1627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8339 2002-01-01 Sim4 clustering to Release 2
CG32396 2002-01-18 Blastp of sequenced clone
CG32396 2003-01-01 Sim4 clustering to Release 3
CG32396 2008-04-29 Release 5.5 accounting
CG32396 2008-08-15 Release 5.9 accounting
CG32396 2008-12-18 5.12 accounting

Clone Sequence Records

AT27896.complete Sequence

1627 bp (1627 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089468

> AT27896.complete
CTTTGATCAAAGCGCATGAGCGAGAAAAGTGGAGGACAGGATGAGGAGGC
AGCCCCTAGATTAGTGGTTTTTAAGGAGCGGAGATTGGGTCGAAATGAGG
GAGATTGTCACACTGCAGATCGGCGGAGCCGGAAATGCCATCGGAGATTC
TTTCTGGCACGTGATTTCACATGAACACGGTGTGGATTATGCTTCTGGTC
GATTTGGCGGCACCAGTCCACTTCAGCTGGAGCGGATCAATGTGTTCTTT
AACGCAACGGCCAGCAAACGGTTCTATGCCCGCACCATACTGATAGACAC
GGAAGCCAGCACCATTCAGCGTCTCAACGCCAGCAGTCAGCTGTATAGGC
CGGAGAACTTTGTGGCTGGATCGGAGAGTGCTGGGAACAACTTTGCACGT
GGCTATCATACGGATGGTGCCGCCATTCTAGATCAGGTGCTAGAAAATAC
GCGCCGGGAGGTCGAATCGGTGGATTCGTTGCAGGGCTTTCAGTTGCTCC
ACTCTATCGGAGGCGGAACTGGCTCCGGCTTGACCTCTCTAATAATGGAG
GCCCTGGTGGAGCAGTATCCGGATAATTTACTCTGCAACTATGTGACCAT
TCCGTCGCCGAATATGTCGCAGGTGGTTGTGGAACCCTATAATGCCCTAC
TTAGTACTCCCGCCTTGGTTAACAATTCGCATTTAACCTTCTGCCTTGAT
AACGAGGCACTGTTCCAAATCTGCAATAGAAACCTGAAGCTCAAGATGTC
CGGCTACGAGCACATTAACCACATAGTAGCCCTGACCATGTCGGGTATAA
CCACTTGCCTGCGGTTTCCTGGCCAACTGAATGCTGGATTGCGCAAGATC
TATGTAAATATGGTGCCATTCCCGCGGCTGCACTTCCTCATACCGGGATT
CGCACCATTGGTCACTTGCAAGCAGCAGCAGTTCAGCAAGGGTACCGTTT
CGGAGCTGGTGCAGCAGATCTTCTACAGTAATAATCTGCTCTGTGCCATC
GATCTTCGAAAGGGCAAACTGCTGACCGCTGCTGGAATTTTCCGAGGAAG
AATGTCACCGCGTGAGGTGGATCAACTGATGACTGGGGTGAGAAATAAGA
ATATCAACAATTTCGTGGACTGGATACCCAACAATATCAAGACGGCTATT
TGCGATATACCGCCGAGGGGCCTCAAGATGTCAGCTACATTCATTGGCAA
CACAACGGCGATTCAGACGCTGTTCCAGCGATTACTGGACGCTTCCATGT
CCATGTTGCGGCGCAAGGCCCATCTTCACTGGTACACGGGAGAGGGAATG
GAGGAACAGGAGTTCCAGGATGCGCAGCAGGAGTTACAAGCCATCATCGA
TGATTACCGCAGTAGTGCTGAGGGCGAGGATTCCGGTGGTGGCGGTGGAG
GAGGCGGTGGCCGAAGTGGAAGCGCCGAAAGCGGTGAAGAGGAGGCCACG
CCCGAAGCCCATTGTCAATATTGCACCGAATAATATTCCTTCCACATTTA
ATTCAGAGAGATAGTTATCAGGGTTCACCAAATTCAAAAGTGTTCATTTG
TAATTACGCGTCTTGGAATCAGGACATATTTCGAGTAGAAAAATATATAT
TTTAGGTATAAAAAAAAAAAAAAAAAA

AT27896.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-RA 1649 CG32396-RA 41..1649 1..1609 8045 100 Plus
betaTub85D.a 1862 betaTub85D.a 915..1036 785..906 220 78.6 Plus
betaTub85D-RA 2001 betaTub85D-RA 1053..1174 785..906 220 78.6 Plus
betaTub85D.a 1862 betaTub85D.a 1242..1346 1112..1216 195 79 Plus
betaTub85D-RA 2001 betaTub85D-RA 1380..1484 1112..1216 195 79 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6523458..6524915 152..1609 7110 99.2 Plus
chr3L 24539361 chr3L 6523255..6523405 1..151 725 98.7 Plus
chr3R 27901430 chr3R 5235012..5235133 906..785 220 78.7 Minus
chr2R 21145070 chr2R 15335157..15335280 903..780 200 77.4 Minus
chr3R 27901430 chr3R 5234702..5234806 1216..1112 195 79 Minus
chr2R 21145070 chr2R 20197476..20197597 782..903 190 77 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6530972..6532430 152..1610 7295 100 Plus
3L 28110227 3L 6530769..6530919 1..151 755 100 Plus
3R 32079331 3R 9409179..9409300 906..785 220 78.7 Minus
2R 25286936 2R 24311491..24311612 782..903 205 77.9 Plus
2R 25286936 2R 19447992..19448115 903..780 200 77.4 Minus
3R 32079331 3R 9408869..9408973 1216..1112 195 79 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6524072..6525530 152..1610 7295 100 Plus
3L 28103327 3L 6523869..6524019 1..151 755 100 Plus
3R 31820162 3R 9150010..9150131 906..785 220 78.6 Minus
2R 25260384 2R 24312690..24312811 782..903 205 77.8 Plus
2R 25260384 2R 19449191..19449314 903..780 200 77.4 Minus
3R 31820162 3R 9149700..9149804 1216..1112 195 79 Minus
2R 25260384 2R 24313159..24313223 1251..1315 145 81.5 Plus
Blast to na_te.dros performed on 2019-03-15 17:42:49 has no hits.

AT27896.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:43:58 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6523255..6523405 1..151 98 -> Plus
chr3L 6523458..6524915 152..1609 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:11 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 1..1389 95..1483 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:22 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 1..1389 95..1483 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:29 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 1..1389 95..1483 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:13:52 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 1..1389 95..1483 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:22 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 1..1389 95..1483 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:50 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 41..1649 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:22 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 41..1649 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:29 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 41..1649 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:13:53 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 41..1649 1..1609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:22 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 41..1649 1..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:58 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6530769..6530919 1..151 100 -> Plus
3L 6530972..6532429 152..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:58 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6530769..6530919 1..151 100 -> Plus
3L 6530972..6532429 152..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:58 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6530769..6530919 1..151 100 -> Plus
3L 6530972..6532429 152..1609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:29 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6523869..6524019 1..151 100 -> Plus
arm_3L 6524072..6525529 152..1609 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:42 Download gff for AT27896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6524072..6525529 152..1609 100   Plus
3L 6523869..6524019 1..151 100 -> Plus

AT27896.pep Sequence

Translation from 94 to 1482

> AT27896.pep
MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQLERINV
FFNATASKRFYARTILIDTEASTIQRLNASSQLYRPENFVAGSESAGNNF
ARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLI
MEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFC
LDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLR
KIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLC
AIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKT
AICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGE
GMEEQEFQDAQQELQAIIDDYRSSAEGEDSGGGGGGGGGRSGSAESGEEE
ATPEAHCQYCTE*

AT27896.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10957-PA 457 GF10957-PA 1..425 1..425 2146 96.2 Plus
Dana\GF12605-PA 447 GF12605-PA 1..428 1..427 1263 55.2 Plus
Dana\GF17765-PA 446 GF17765-PA 1..428 1..427 1240 55.2 Plus
Dana\GF11391-PA 474 GF11391-PA 1..454 1..427 1204 52.1 Plus
Dana\GF16133-PA 513 GF16133-PA 1..484 1..427 1110 47.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15348-PA 462 GG15348-PA 1..462 1..462 2194 95 Plus
Dere\betaTub85D-PA 446 GG17374-PA 1..428 1..427 1240 55.2 Plus
Dere\GG22960-PA 454 GG22960-PA 1..434 1..427 1235 54.5 Plus
Dere\GG20906-PA 475 GG20906-PA 1..456 1..427 1223 51.9 Plus
Dere\GG12076-PA 513 GG12076-PA 1..484 1..427 1154 48.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12373-PA 456 GH12373-PA 1..455 1..461 2045 85.3 Plus
Dgri\GH20203-PA 447 GH20203-PA 1..428 1..427 1263 55.2 Plus
Dgri\GH19142-PA 446 GH19142-PA 1..428 1..427 1240 55.2 Plus
Dgri\GH20987-PA 454 GH20987-PA 1..434 1..427 1236 54 Plus
Dgri\GH14021-PA 512 GH14021-PA 1..484 1..427 986 43.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-PA 462 CG32396-PA 1..462 1..462 2405 100 Plus
betaTub56D-PB 447 CG9277-PB 1..427 1..426 1280 55.4 Plus
betaTub85D-PA 446 CG9359-PA 1..444 1..434 1263 54.4 Plus
betaTub60D-PB 453 CG3401-PB 1..432 1..426 1255 54.3 Plus
betaTub60D-PA 454 CG3401-PA 1..433 1..426 1253 53.9 Plus
betaTub97EF-PB 457 CG4869-PB 1..427 1..426 1247 55.4 Plus
betaTub97EF-PC 457 CG4869-PC 1..427 1..426 1238 54.4 Plus
betaTub56D-PA 456 CG9277-PA 29..436 20..426 1230 55.3 Plus
alphaTub84D-PA 450 CG2512-PA 1..446 1..437 763 34.7 Plus
alphaTub84B-PA 450 CG1913-PA 1..446 1..437 758 34.7 Plus
alphaTub67C-PA 462 CG8308-PA 1..455 1..435 747 34.4 Plus
alphaTub85E-PA 449 CG9476-PA 1..432 1..421 736 34.6 Plus
CG7794-PA 455 CG7794-PA 6..433 3..421 635 31.2 Plus
gammaTub23C-PA 475 CG3157-PA 4..443 3..424 556 31 Plus
gammaTub37C-PB 457 CG17566-PB 4..441 3..426 551 30.9 Plus
gammaTub37C-PA 457 CG17566-PA 4..441 3..426 551 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14752-PA 460 GI14752-PA 1..422 1..422 2109 94.8 Plus
Dmoj\GI20729-PA 447 GI20729-PA 1..428 1..427 1263 55.2 Plus
Dmoj\GI23599-PA 446 GI23599-PA 1..428 1..427 1240 55.2 Plus
Dmoj\GI21321-PA 454 GI21321-PA 1..434 1..427 1234 54.5 Plus
Dmoj\GI24852-PA 512 GI24852-PA 238..484 181..427 804 58.3 Plus
Dmoj\GI24852-PA 512 GI24852-PA 1..228 1..227 557 51.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19895-PA 469 GL19895-PA 1..426 1..426 2118 94.4 Plus
Dper\GL16725-PA 447 GL16725-PA 1..428 1..427 1263 55.2 Plus
Dper\GL13671-PA 445 GL13671-PA 1..427 1..427 1173 53.6 Plus
Dper\GL23875-PA 511 GL23875-PA 1..499 1..433 1149 47 Plus
Dper\GL12714-PA 464 GL12714-PA 1..456 1..433 695 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28334-PA 464 GA28334-PA 1..425 1..425 2111 94.4 Plus
Dpse\GA27686-PA 447 GA27686-PA 1..428 1..427 1263 55.2 Plus
Dpse\GA21728-PA 446 GA21728-PA 1..428 1..427 1240 55.2 Plus
Dpse\GA17427-PA 454 GA17427-PA 1..434 1..427 1236 54.9 Plus
Dpse\GA27086-PB 455 GA27086-PB 1..443 1..433 1225 53.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14788-PA 462 GM14788-PA 1..462 1..462 2461 98.9 Plus
Dsec\GM19828-PA 447 GM19828-PA 1..428 1..427 1263 55.2 Plus
Dsec\GM26260-PA 446 GM26260-PA 1..428 1..427 1240 55.2 Plus
Dsec\GM11852-PA 454 GM11852-PA 1..434 1..427 1240 54.7 Plus
Dsec\GM16302-PA 513 GM16302-PA 1..484 1..427 1153 48.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13960-PA 462 GD13960-PA 1..462 1..462 2438 98.3 Plus
Dsim\GD25319-PA 447 GD25319-PA 1..428 1..427 1263 55.2 Plus
Dsim\GD20798-PA 446 GD20798-PA 1..428 1..427 1240 55.2 Plus
Dsim\GD14204-PA 462 GD14204-PA 1..455 1..435 709 34.2 Plus
Dsim\GD19940-PA 450 GD19940-PA 1..432 1..421 708 34.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19155-PA 461 GJ19155-PA 1..461 1..462 2123 90 Plus
Dvir\GJ20466-PA 447 GJ20466-PA 1..428 1..427 1263 55.2 Plus
Dvir\GJ23573-PA 446 GJ23573-PA 1..428 1..427 1240 55.2 Plus
Dvir\GJ21592-PA 454 GJ21592-PA 1..434 1..427 1237 54 Plus
Dvir\GJ24495-PA 523 GJ24495-PA 238..495 181..427 781 55.4 Plus
Dvir\GJ24495-PA 523 GJ24495-PA 1..228 1..227 556 51.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10221-PA 456 GK10221-PA 1..456 1..462 2157 90.5 Plus
Dwil\GK15706-PA 447 GK15706-PA 1..428 1..427 1263 55.2 Plus
Dwil\GK12133-PA 446 GK12133-PA 1..428 1..427 1240 55.2 Plus
Dwil\GK22203-PA 454 GK22203-PA 1..434 1..427 1235 54.5 Plus
Dwil\GK22527-PA 513 GK22527-PA 1..484 1..427 1116 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21566-PA 462 GE21566-PA 1..462 1..462 2205 96.3 Plus
Dyak\betaTub56D-PA 447 GE13844-PA 1..428 1..427 1263 55.2 Plus
Dyak\GE24779-PA 446 GE24779-PA 1..428 1..427 1240 55.2 Plus
Dyak\GE14397-PA 454 GE14397-PA 1..434 1..427 1235 54.5 Plus
Dyak\GE10520-PA 513 GE10520-PA 1..484 1..427 1153 48.5 Plus

AT27896.hyp Sequence

Translation from 94 to 1482

> AT27896.hyp
MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQLERINV
FFNATASKRFYARTILIDTEASTIQRLNASSQLYRPENFVAGSESAGNNF
ARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLI
MEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFC
LDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLR
KIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLC
AIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKT
AICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGE
GMEEQEFQDAQQELQAIIDDYRSSAEGEDSGGGGGGGGGRSGSAESGEEE
ATPEAHCQYCTE*

AT27896.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-PA 462 CG32396-PA 1..462 1..462 2405 100 Plus
betaTub56D-PB 447 CG9277-PB 1..427 1..426 1280 55.4 Plus
betaTub85D-PA 446 CG9359-PA 1..444 1..434 1263 54.4 Plus
betaTub60D-PB 453 CG3401-PB 1..432 1..426 1255 54.3 Plus
betaTub60D-PA 454 CG3401-PA 1..433 1..426 1253 53.9 Plus