Clone AT27928 Report

Search the DGRC for AT27928

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:279
Well:28
Vector:pOTB7
Associated Gene/TranscriptCG31391-RA
Protein status:AT27928.pep: gold
Preliminary Size:2874
Sequenced Size:1723

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6471 2002-01-01 Sim4 clustering to Release 2
CG31391 2002-05-18 Blastp of sequenced clone
CG31391 2003-01-01 Sim4 clustering to Release 3
CG31391 2008-04-29 Release 5.5 accounting
CG31391 2008-08-15 Release 5.9 accounting
CG31391 2008-12-18 5.12 accounting

Clone Sequence Records

AT27928.complete Sequence

1723 bp (1723 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118718

> AT27928.complete
ACTAAACTTCGTCACGTACACATCAATTTAAATACACTTTAAAAACACTA
AACACAACCCGATCTTGGTTTATCTGCGCGACTACGATGAAAAGAGTCCA
TGTCGATAACTACGCTCCAAAGTACTACAGCGGCAAGTGGTCATGGGACT
CGGAGAAGGACTGCCTCAACTTTCAGGCGCACAACGATCTGGAAAACGCA
AGAGAGCGCTATATAATCACCAATGGGTACAAGTTCCTGCGTACCATCGA
CCAAGAGGAGGAGCTTATCTTCCGGCAGGAGTATGTACGCGCCAAGTCCA
ACACCAGTGACACAGTGGTGCTAAGAGATATTCGAGATCTGGTGCTCTAC
TTGATGCCTAAAGACTTTCTAACCTACAAGTTCATTGAATTCATGCATGA
GCCACAGGTGCAGTCCGTGCTCCACGCCTTAACATTGTACTTTGAGTACT
ACCTACGCCTGGTGGAGTTCGTCCTGATTCGCAGAGATGAACTCTCTGGC
CAGATGGCCCAAATTCAGAGCGAGCAGACCACTGAGATGAAGAAAACCTA
TTCCGTTTACCTGAGCCACTTCCGCATGCTATTAGCCCGAAACTACTGTG
AGATTATCAAGGGCGAGGGATCTATGGCCAAGTACTACCACATGAAGCCG
ATTTCCAACATTTCAGCAACTATCCACGATAAGTACTTCCATGAGCATTT
TCTGGCAGTATCCATCCAAATAGTCTGGATATGCATGCATCGCCGAGCGT
ATTTCGTCATCGAAATGGAGATGAATCGGCTTTTCCGGTCGGAGCACTTT
GTTTCCGTCCGCCCTGAGTACCTTGAGTTCACGGAGGCGGAGCGAAGTCT
TCTTTACGGCCGAAACAACAAGAACCTCAATTATCGCGTCCAGATCTCTC
CGCTGGTCCAAGAGTTGGAGCATGTTGTGACGGAGGATTTGCCCATTCTG
TGGATAGGAAAGCGTAAGTATAGGGGCACTGATCCTCACATCGCTCAGAT
CGAGTTGGAGTACGTTGTGCCCGGATCGCAGCTCCGCTTGATTGATCTGT
CCCATGGAATCCTTGGCCACCCGAAGAATCTCTACAACACCCTTCTGAAC
CTCGACTGGCCAGCAGTTCGGTTCTCAAACTTTTCGGAGCAATACGACCC
ATATCATATCATCAGACGAAACCACCTGGACATTCCCAAGTTGGGTGAAC
TTGAAATGCGAAAATTTGGGGAGAGTTACGAGCACTTTTACGAGATCTTT
CACTTTTTCGAGCCAGTCACCCATTCACATATCTGCAAGTGGGTCAAACG
GGAGATCAACATAGCGTTCTTTCGGTCCGGAGGTCTGCTCACGAACGTAG
TCTCACGATGTGAAAAGGAATTGGCCACCGCATATGAGGGACAAGAAGTG
GACAAGATCATTGCCAATTACTTCAAGATAGTGTCTAACATACGAAAGGT
GGACTACTTTGAGTCGCCTCGTGTGAGTGACGTTAGCACAGTGAAGAAGG
GGAACTTTGGAAAAAGACAAAGTACCTAAAAAGTCGGCTTGAAAGTAGTC
AGCAAAAATCATGCATTGTTGGTTGCGATTTTGTGCAAGAATACTACCTT
ACTTTTGAGGGCCAAAAATAGGTATTCGTGTAATTTATATATTTCCAACC
TGTCTACATATAAAAAAAAAATACATTTATAGTATCATGAAAATATTGAA
AAACTAAAAAAAAAAAAAAAAAA

AT27928.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31391-RA 1708 CG31391-RA 1..1708 1..1709 8430 99.6 Plus
CG31467-RA 1697 CG31467-RA 559..929 516..886 1015 84.9 Plus
CG31467.a 1647 CG31467.a 559..929 516..886 1015 84.9 Plus
CG31467-RA 1697 CG31467-RA 142..329 99..286 715 92 Plus
CG31467.a 1647 CG31467.a 142..329 99..286 715 92 Plus
CG31467-RA 1697 CG31467-RA 976..1253 933..1210 415 76.6 Plus
CG31467-RA 1697 CG31467-RA 1324..1496 1281..1453 400 82 Plus
CG31467.a 1647 CG31467.a 1274..1446 1281..1453 400 82 Plus
CG31467.a 1647 CG31467.a 976..1233 933..1190 390 76.7 Plus
CG31467-RA 1697 CG31467-RA 358..445 315..402 185 80.6 Plus
CG31467.a 1647 CG31467.a 358..445 315..402 185 80.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6528916..6530620 1705..1 8420 99.6 Minus
chr3R 27901430 chr3R 6530912..6532266 1453..99 2365 78.3 Minus
chr3R 27901430 chr3R 6535640..6536260 1136..516 600 73.1 Minus
chr3R 27901430 chr3R 6536491..6536683 279..87 470 82.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:00:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10703367..10705075 1710..1 8425 99.6 Minus
3R 32079331 3R 10705368..10706722 1453..99 2380 78.4 Minus
3R 32079331 3R 10710096..10710716 1136..516 600 73.1 Minus
3R 32079331 3R 10710947..10711139 279..87 470 82.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10444198..10445906 1710..1 8435 99.6 Minus
3R 31820162 3R 10446766..10447136 886..516 1015 84.9 Minus
3R 31820162 3R 10447366..10447553 286..99 715 92 Minus
3R 31820162 3R 10451778..10451970 279..87 470 82.9 Minus
3R 31820162 3R 10446442..10446719 1210..933 415 76.6 Minus
3R 31820162 3R 10446199..10446371 1453..1281 400 82 Minus
3R 31820162 3R 10450927..10451066 1136..997 250 78.5 Minus
3R 31820162 3R 10451093..10451227 970..836 210 77 Minus
3R 31820162 3R 10451260..10451377 803..686 185 77.1 Minus
3R 31820162 3R 10447250..10447337 402..315 185 80.6 Minus
Blast to na_te.dros performed on 2019-03-16 01:57:35 has no hits.

AT27928.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:58:25 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6528970..6530620 1..1651 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:14 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1443 87..1529 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:22 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1443 87..1529 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:12:21 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1443 87..1529 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:39:43 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1443 87..1529 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:52:46 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1443 87..1529 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:23:18 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1704 1..1705 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:21 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1704 1..1705 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:12:21 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1704 1..1705 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:39:43 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1704 1..1705 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:52:46 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
CG31391-RA 1..1704 1..1705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:25 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10703372..10705075 1..1705 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:25 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10703372..10705075 1..1705 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:25 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10703372..10705075 1..1705 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:12:21 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6529094..6530797 1..1705 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:04 Download gff for AT27928.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10444203..10445906 1..1705 99   Minus

AT27928.pep Sequence

Translation from 86 to 1528

> AT27928.pep
MKRVHVDNYAPKYYSGKWSWDSEKDCLNFQAHNDLENARERYIITNGYKF
LRTIDQEEELIFRQEYVRAKSNTSDTVVLRDIRDLVLYLMPKDFLTYKFI
EFMHEPQVQSVLHALTLYFEYYLRLVEFVLIRRDELSGQMAQIQSEQTTE
MKKTYSVYLSHFRMLLARNYCEIIKGEGSMAKYYHMKPISNISATIHDKY
FHEHFLAVSIQIVWICMHRRAYFVIEMEMNRLFRSEHFVSVRPEYLEFTE
AERSLLYGRNNKNLNYRVQISPLVQELEHVVTEDLPILWIGKRKYRGTDP
HIAQIELEYVVPGSQLRLIDLSHGILGHPKNLYNTLLNLDWPAVRFSNFS
EQYDPYHIIRRNHLDIPKLGELEMRKFGESYEHFYEIFHFFEPVTHSHIC
KWVKREINIAFFRSGGLLTNVVSRCEKELATAYEGQEVDKIIANYFKIVS
NIRKVDYFESPRVSDVSTVKKGNFGKRQST*

AT27928.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17445-PA 465 GF17445-PA 1..457 1..456 1813 71.3 Plus
Dana\GF20669-PA 487 GF20669-PA 1..473 1..475 1729 67.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17278-PA 477 GG17278-PA 1..476 1..476 2391 92.4 Plus
Dere\GG17277-PA 483 GG17277-PA 1..456 1..456 1970 78.3 Plus
Dere\GG17274-PA 487 GG17274-PA 1..477 1..478 1716 65.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17359-PA 490 GH17359-PA 1..455 1..454 1646 64.2 Plus
Dgri\GH17029-PA 487 GH17029-PA 1..466 1..465 1427 55.6 Plus
Dgri\GH13925-PA 208 GH13925-PA 1..187 279..465 481 46.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31391-PA 480 CG31391-PA 1..480 1..480 2538 100 Plus
CG31467-PA 480 CG31467-PA 1..456 1..456 1944 78.5 Plus
CG14689-PA 487 CG14689-PA 1..477 1..478 1723 67.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23898-PA 491 GI23898-PA 1..470 1..469 1607 61.3 Plus
Dmoj\GI11569-PA 480 GI11569-PA 1..455 1..454 1523 60 Plus
Dmoj\GI12233-PA 477 GI12233-PA 1..455 1..454 1489 59.6 Plus
Dmoj\GI21012-PA 486 GI21012-PA 1..453 1..454 1391 55.4 Plus
Dmoj\GI21013-PA 453 GI21013-PA 1..449 1..453 1197 49.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12631-PA 489 GL12631-PA 1..473 1..475 1817 71 Plus
Dper\GL12630-PA 455 GL12630-PA 1..454 1..454 1489 60.7 Plus
Dper\GL12629-PA 456 GL12629-PA 1..455 1..454 1420 60.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13178-PA 489 GA13178-PA 1..473 1..475 1817 71 Plus
Dpse\GA27575-PA 455 GA27575-PA 1..454 1..454 1482 60.4 Plus
Dpse\GA27574-PA 456 GA27574-PA 1..455 1..454 1420 60.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26162-PA 480 GM26162-PA 1..480 1..480 2528 97.1 Plus
Dsec\GM26161-PA 480 GM26161-PA 1..456 1..456 1969 78.5 Plus
Dsec\GM26158-PA 487 GM26158-PA 1..477 1..478 1745 67.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20715-PA 480 GD20715-PA 1..480 1..480 2528 97.1 Plus
Dsim\GD20714-PA 480 GD20714-PA 1..456 1..456 1975 78.7 Plus
Dsim\GD20711-PA 487 GD20711-PA 1..477 1..478 1744 67.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23991-PA 494 GJ23991-PA 1..456 1..455 1658 64.9 Plus
Dvir\GJ11249-PA 484 GJ11249-PA 1..455 1..454 1593 62 Plus
Dvir\GJ21935-PA 500 GJ21935-PA 1..468 1..470 1515 58.6 Plus
Dvir\GJ21936-PA 458 GJ21936-PA 1..455 1..454 1478 57.8 Plus
Dvir\GJ23990-PA 487 GJ23990-PA 1..454 1..454 1436 58.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11284-PA 498 GK11284-PA 1..455 1..454 1750 68.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24680-PA 483 GE24680-PA 1..476 1..476 2379 91.4 Plus
Dyak\GE24679-PA 484 GE24679-PA 1..456 1..456 1949 77.9 Plus
Dyak\GE24675-PA 487 GE24675-PA 1..477 1..478 1744 67.5 Plus

AT27928.hyp Sequence

Translation from 86 to 1528

> AT27928.hyp
MKRVHVDNYAPKYYSGKWSWDSEKDCLNFQAHNDLENARERYIITNGYKF
LRTIDQEEELIFRQEYVRAKSNTSDTVVLRDIRDLVLYLMPKDFLTYKFI
EFMHEPQVQSVLHALTLYFEYYLRLVEFVLIRRDELSGQMAQIQSEQTTE
MKKTYSVYLSHFRMLLARNYCEIIKGEGSMAKYYHMKPISNISATIHDKY
FHEHFLAVSIQIVWICMHRRAYFVIEMEMNRLFRSEHFVSVRPEYLEFTE
AERSLLYGRNNKNLNYRVQISPLVQELEHVVTEDLPILWIGKRKYRGTDP
HIAQIELEYVVPGSQLRLIDLSHGILGHPKNLYNTLLNLDWPAVRFSNFS
EQYDPYHIIRRNHLDIPKLGELEMRKFGESYEHFYEIFHFFEPVTHSHIC
KWVKREINIAFFRSGGLLTNVVSRCEKELATAYEGQEVDKIIANYFKIVS
NIRKVDYFESPRVSDVSTVKKGNFGKRQST*

AT27928.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31391-PA 480 CG31391-PA 1..480 1..480 2538 100 Plus
CG31467-PA 480 CG31467-PA 1..456 1..456 1944 78.5 Plus
CG14689-PA 487 CG14689-PA 1..477 1..478 1723 67.7 Plus