Clone AT28215 Report

Search the DGRC for AT28215

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:282
Well:15
Vector:pOTB7
Associated Gene/TranscriptCG31473-RA
Protein status:AT28215.pep: gold
Sequenced Size:957

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31473-RA 2011-03-11 Manual selection by Ken Wan

Clone Sequence Records

AT28215.complete Sequence

957 bp assembled on 2011-04-26

GenBank Submission: BT126370.1

> AT28215.complete
GTTATAAATTGTAGAGCATATTAAAAATTACTATGTCGACTGTTTTGGCA
CAAAAGCTGTGGTGTACGCTTTGGTCAGCAGGATCACTAGGTCGCTTTGC
ACAGCACATGAGCAACGCTGCCCACCAGGTGAGCTGTATAGGCAGCGAGG
AGCAGCGGGTGTACGAGGAGCCACACGTAATCTTCCAGAACTGGCTGATG
GCCGCCCAGAAGGAGGCTCCTCAGGTGCGGCCTCGACTGGCCTGCATGGC
CACGGTGGACAAGTCCGGTGAGCCTGTGACCCGCCTAACCAGCATCGAGG
AGGTCAATTCCCATGGAATCACCTTCTTCACAACCCTCGGCAGTCGGCAG
GCGGGCGAGATAAGCGCCAATCCTCACGTGTCGCTACACTTCAACTGGGC
GCCGCTCATGCGCAGTGTTCGCATAGCAGGATCTGCTCACCAGCTAACGG
AGGAGCAGGTTCGGGACCAGTTCCGACGATTTCCGCGCCACGTCCAGATG
AGCATCACCCATGGACCACGATACGCTGCGGCCGAGTGGCAATCCCGATC
CGGGTTCTTTGCGCGGATCGGACAGCGCTTGAACACCTGGCTTGGCAAGC
AACCGGAGGAGATCCCCATGCCGCACAACTGGGGAGGCTATATTCTTACA
CCCAGCCTATACGAATTCGGAATGCTAAGCGGCGAGAAGGCCGGTAGGAC
TCGGGTGCGATTCCGACGGTGTCTTGAAATGCCAAGGGGTACAAGAGTTG
GTCACGTTCAAGCTGAAAGGCAGGACTGGGTTTATGATTCGTGTGATGAA
AATTGATACAAAACTATTCAAGGATATGATTCTACTCTAAATCCTTCTGT
GTATAAAAACCAATTGTTTTATGACCAGCGTACCCTTACAGCTAAATCCT
ATGTCAAATAAAATTATTTGTTTAACAGGTTAAAAAAAAAAAAAAAAAAA
AAAAAAA

AT28215.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3637915..3638652 1..738 3675 99.9 Plus
chr3R 27901430 chr3R 3638866..3639060 737..931 975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7811864..7812601 1..738 3690 100 Plus
3R 32079331 3R 7812815..7813011 737..933 985 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7552695..7553432 1..738 3690 100 Plus
3R 31820162 3R 7553646..7553842 737..933 985 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:35:08 has no hits.

AT28215.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:35:54 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3637915..3638651 1..737 99 -> Plus
chr3R 3638867..3639060 738..931 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-27 15:22:51 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
CG31473-RA 1..774 33..806 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:20:44 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
CG31473-RA 1..774 33..806 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:07:21 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
CG31473-RA 1..774 33..806 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-27 15:22:51 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
CG31473-RA 51..981 1..931 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:20:44 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
CG31473-RA 51..981 1..931 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:21 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
CG31473-RA 51..981 1..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:54 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7811864..7812600 1..737 100 -> Plus
3R 7812816..7813009 738..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:54 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7811864..7812600 1..737 100 -> Plus
3R 7812816..7813009 738..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:54 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7811864..7812600 1..737 100 -> Plus
3R 7812816..7813009 738..931 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:20:44 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3637586..3638322 1..737 100 -> Plus
arm_3R 3638538..3638731 738..931 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:06:39 Download gff for AT28215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7552695..7553431 1..737 100 -> Plus
3R 7553647..7553840 738..931 100   Plus

AT28215.pep Sequence

Translation from 32 to 805

> AT28215.pep
MSTVLAQKLWCTLWSAGSLGRFAQHMSNAAHQVSCIGSEEQRVYEEPHVI
FQNWLMAAQKEAPQVRPRLACMATVDKSGEPVTRLTSIEEVNSHGITFFT
TLGSRQAGEISANPHVSLHFNWAPLMRSVRIAGSAHQLTEEQVRDQFRRF
PRHVQMSITHGPRYAAAEWQSRSGFFARIGQRLNTWLGKQPEEIPMPHNW
GGYILTPSLYEFGMLSGEKAGRTRVRFRRCLEMPRGTRVGHVQAERQDWV
YDSCDEN*

AT28215.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18174-PA 260 GF18174-PA 1..260 1..256 916 63.6 Plus
Dana\GF16863-PA 237 GF16863-PA 26..233 39..252 295 33.2 Plus
Dana\GF16862-PA 232 GF16862-PA 21..228 39..252 265 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14219-PA 257 GG14219-PA 1..257 1..257 1266 90.3 Plus
Dere\GG14208-PA 237 GG14208-PA 26..233 39..252 294 34.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18972-PA 221 GH18972-PA 1..215 36..253 443 42.7 Plus
Dgri\GH18971-PA 238 GH18971-PA 33..234 45..252 235 31.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31473-PA 257 CG31473-PA 1..257 1..257 1381 100 Plus
sgll-PB 237 CG31472-PB 26..233 39..252 289 33.6 Plus
sgll-PA 246 CG31472-PA 35..242 39..252 289 33.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24132-PA 260 GI24132-PA 54..259 46..257 501 46.5 Plus
Dmoj\GI24131-PA 237 GI24131-PA 26..233 39..252 286 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12459-PA 260 GL12459-PA 40..253 39..252 730 62.6 Plus
Dper\GL12458-PA 237 GL12458-PA 26..233 39..252 300 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16274-PA 260 GA16274-PA 40..253 39..252 730 62.6 Plus
Dpse\GA27512-PA 237 GA27512-PA 26..233 39..252 302 33.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10976-PA 257 GM10976-PA 1..257 1..257 1318 95.3 Plus
Dsec\GM10975-PA 237 GM10975-PA 26..233 39..252 291 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19952-PA 257 GD19952-PA 1..257 1..257 1322 95.3 Plus
Dsim\GD19951-PA 237 GD19951-PA 26..233 39..252 291 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10955-PA 237 GJ10955-PA 27..232 46..257 524 46 Plus
Dvir\GJ10954-PA 237 GJ10954-PA 32..233 45..252 297 34.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12025-PA 263 GK12025-PA 4..262 2..257 684 53.4 Plus
Dwil\GK12024-PA 237 GK12024-PA 26..233 39..252 306 32.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11188-PA 257 GE11188-PA 1..257 1..257 1257 89.9 Plus
Dyak\GE24944-PA 62 GE24944-PA 1..62 196..257 325 93.5 Plus
Dyak\GE11187-PA 237 GE11187-PA 26..233 39..252 304 34.1 Plus
Dyak\GE24943-PA 237 GE24943-PA 26..233 39..252 303 34.1 Plus

AT28215.hyp Sequence

Translation from 32 to 805

> AT28215.hyp
MSTVLAQKLWCTLWSAGSLGRFAQHMSNAAHQVSCIGSEEQRVYEEPHVI
FQNWLMAAQKEAPQVRPRLACMATVDKSGEPVTRLTSIEEVNSHGITFFT
TLGSRQAGEISANPHVSLHFNWAPLMRSVRIAGSAHQLTEEQVRDQFRRF
PRHVQMSITHGPRYAAAEWQSRSGFFARIGQRLNTWLGKQPEEIPMPHNW
GGYILTPSLYEFGMLSGEKAGRTRVRFRRCLEMPRGTRVGHVQAERQDWV
YDSCDEN*

AT28215.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31473-PA 257 CG31473-PA 1..257 1..257 1381 100 Plus
sgll-PB 237 CG31472-PB 26..233 39..252 289 33.6 Plus
sgll-PA 246 CG31472-PA 35..242 39..252 289 33.6 Plus