Clone AT28243 Report

Search the DGRC for AT28243

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:282
Well:43
Vector:pOTB7
Associated Gene/TranscriptTrxr-2-RA
Protein status:AT28243.pep: gold
Preliminary Size:1551
Sequenced Size:1812

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11401 2002-01-01 Sim4 clustering to Release 2
CG11401 2003-01-01 Sim4 clustering to Release 3
CG11401 2003-08-12 Blastp of sequenced clone
Trxr-2 2008-04-29 Release 5.5 accounting
Trxr-2 2008-08-15 Release 5.9 accounting
Trxr-2 2008-12-18 5.12 accounting

Clone Sequence Records

AT28243.complete Sequence

1812 bp (1812 high quality bases) assembled on 2003-08-12

GenBank Submission: AY121613

> AT28243.complete
TAATAATTTCACAAGTTGGCAGTGCCGAGTCCTAAAATTCCGGTTTACCT
TCTTTTCGACCTGAAATTTGTTCCCGTCCAATTTATCAGTCCAATATGTC
GACGATAAAGTTTCTGCGATCCTCCACACACAACGCACTTCGGTCCAGCC
TCGGATGGTGCCGCCTTGCTGCCTCAAGACCACGCTATGATTACGACCTT
GTGGTGCTCGGCGGGGGCTCGGCGGGATTGGCGTGTGCCAAGGAGGCTGC
TGGCTGTGGAGCCCGCGTGCTCTGCTTCGACTACGTCAAGCCCACTCCAG
TGGGCACCAAGTGGGGCATCGGCGGCACCTGCGTGAATGTGGGCTGCATC
CCCAAGAAGCTAATGCACCAGGCCTCGCTGCTGGGCGAGGCTGTTCACGA
GGCGGTGGCCTACGGCTGGAATGTAGACGACACGAACATACGGCCCGATT
GGCGCAAGTTGGTGCGCTCCGTCCAGAACCACATCAAGTCCGTCAACTGG
GTGACCCGCGTGGACCTGCGCGACAAAAAGGTGGAGTACGTAAATTCGAT
GGCCACCTTTCGCGACAGCCACACCATCGAGTATGTGGCGATGCCAGGTG
CCGAGCACCGTCAAGTGACCTCAGAGTACGTGGTGGTAGCCGTCGGCGGG
AGGCCACGCTACCCGGACATTCCCGGAGCCGTTGAACTGGGCATCACCAG
CGACGATATATTCAGCTACGAGCGAGAGCCGGGTCGTACCCTTGTGGTGG
GCGCCGGATACGTGGGTCTCGAGTGCGCCTGTTTCCTTAAGGGTCTCGGC
TACGAGCCCACTGTCATGGTGCGCTCCATTGTGCTGCGCGGCTTCGATCG
CCAGATGTCCGAGCTGCTGGCCGCCATGATGACTGAGCGCGGCATTCCCT
TCCTGGGCACCACAATCCCCAAGGCCGTGGAGAGGCAGGCGGACGGACGG
CTGCTAGTTCGGTACCGCAACACAACCACCCAAATGGACGGCAGCGACGT
TTTCGACACCGTGCTGTGGGCCATTGGGCGCAAAGGTCTCATCGAGGACC
TCAACCTGGACGCCGCCGGAGTGAAGACTCATGACGACAAGATTGTGGTA
GACGCCGCGGAGGCCACCAGCGTGCCTCATATATTTGCAGTTGGGGACAT
CATATATGGTCGACCAGAGCTAACGCCGGTGGCCATCCTGTCGGGCCGCC
TGCTTGCCAGGCGTCTGTTCGCCGGCTCCACGCAGCTGATGGACTATGCC
GACGTGGCAACCACAGTTTTTACTCCGCTAGAATACAGTTGCGTCGGCAT
GTCGGAGGAAACGGCCATCGAACTGCGTGGTGCTGACAACATCGAGGTCT
TCCACGGCTACTACAAGCCCACAGAGTTCTTTATTCCCCAGAAGAGCGTG
CGTCACTGCTACCTCAAGGCCGTAGCCGAAGTGTCCGGGGACCAGAAGAT
CCTTGGCCTGCACTACATCGGCCCAGTCGCCGGCGAGGTCATCCAGGGCT
TCGCCGCAGCCCTCAAGACCGGCTTGACCGTAAAGACGCTTCTGAACACG
GTGGGAATCCACCCCACCACCGCCGAAGAGTTCACCCGGCTGTCAATCAC
CAAGCGATCTGGTCGGGATCCTACACCAGCCTCCTGTTGCAGTTAGTTCC
GTGCCTTGGAGATAGGTATCTTGTGGTGAGAAACAAAGCATATTTCTTTC
ACTTCAAGTATGTTTCAGTCCGTATCTACTGTCGATTTTAGTACGTGAAA
GGCTACACACCATTTTCATTCTAATTAAAAAAAATTGGTCACTTAAAAAA
AAAAAAAAAAAA

AT28243.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1797 Trxr-2-RA 1..1796 1..1796 8980 100 Plus
Trxr-1.a 1874 Trxr-1.a 522..787 639..904 490 78.9 Plus
Trxr-1.b 1874 Trxr-1.b 522..787 639..904 490 78.9 Plus
Trxr-1.a 1874 Trxr-1.a 193..322 301..430 455 90 Plus
Trxr-1.b 1874 Trxr-1.b 193..322 301..430 455 90 Plus
Trxr-1.a 1874 Trxr-1.a 1337..1525 1454..1642 330 78.3 Plus
Trxr-1.b 1874 Trxr-1.b 1337..1525 1454..1642 330 78.3 Plus
Trxr-1.a 1874 Trxr-1.a 332..428 443..539 320 88.6 Plus
Trxr-1.b 1874 Trxr-1.b 332..428 443..539 320 88.6 Plus
Trxr-1.a 1874 Trxr-1.a 1224..1312 1341..1429 310 89.8 Plus
Trxr-1.b 1874 Trxr-1.b 1224..1312 1341..1429 310 89.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22539134..22540927 1..1794 8970 100 Plus
chrX 22417052 chrX 8138632..8139503 771..1642 805 72.8 Plus
chrX 22417052 chrX 8137911..8138252 185..526 650 80.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22550226..22552021 1..1796 8980 100 Plus
X 23542271 X 8246819..8247690 771..1642 835 73.1 Plus
X 23542271 X 8246098..8246439 185..526 680 81.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22543326..22545121 1..1796 8980 100 Plus
X 23527363 X 8254315..8254444 301..430 455 90 Plus
X 23527363 X 8254917..8255050 771..904 370 85 Plus
X 23527363 X 8255600..8255788 1454..1642 330 78.3 Plus
X 23527363 X 8255487..8255575 1341..1429 310 89.8 Plus
X 23527363 X 8254454..8254537 443..526 285 89.2 Plus
Blast to na_te.dros performed 2019-03-16 13:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 240..285 38..83 131 76.1 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8122..8167 38..83 131 76.1 Plus

AT28243.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:35:12 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22539134..22540927 1..1794 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:42 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1551 96..1646 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:14:39 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1551 96..1646 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:24 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1551 96..1646 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:06 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1551 96..1646 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:15 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1551 96..1646 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:10 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1794 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:14:39 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1794 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:24 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1794 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:08 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1794 1..1794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:15 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 1..1794 1..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:12 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22550226..22552019 1..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:12 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22550226..22552019 1..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:35:12 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22550226..22552019 1..1794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:24 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22543326..22545119 1..1794 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:34 Download gff for AT28243.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22543326..22545119 1..1794 100   Plus

AT28243.pep Sequence

Translation from 95 to 1645

> AT28243.pep
MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE
AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV
HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN
SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI
TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF
DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS
DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG
DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV
GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ
KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS
ITKRSGRDPTPASCCS*

AT28243.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23459-PA 514 GF23459-PA 15..514 17..516 2383 88.6 Plus
Dana\GF19373-PA 537 GF19373-PA 54..537 31..516 2017 76.6 Plus
Dana\GF24574-PA 504 GF24574-PA 3..500 2..507 370 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16263-PA 518 GG16263-PA 1..518 1..516 2623 95 Plus
Dere\GG19308-PA 491 GG19308-PA 1..491 24..516 2021 75.5 Plus
Dere\GG13635-PA 504 GG13635-PA 36..500 31..507 355 26.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16699-PA 514 GH16699-PA 3..514 6..516 2196 82.8 Plus
Dgri\GH12753-PA 596 GH12753-PA 106..596 23..516 2036 76.1 Plus
Dgri\GH17093-PA 504 GH17093-PA 17..500 15..507 337 26 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-PA 516 CG11401-PA 1..516 1..516 2690 100 Plus
Trxr-1-PA 491 CG2151-PA 1..491 24..516 1980 75.9 Plus
Trxr-1-PC 508 CG2151-PC 25..508 31..516 1979 76.8 Plus
Trxr-1-PB 596 CG2151-PB 113..596 31..516 1979 76.8 Plus
CG7430-PB 504 CG7430-PB 36..500 31..507 377 27.3 Plus
CG7430-PA 504 CG7430-PA 36..500 31..507 377 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11388-PA 515 GI11388-PA 1..515 1..516 2219 83.6 Plus
Dmoj\GI15898-PA 601 GI15898-PA 116..601 28..516 2040 76.9 Plus
Dmoj\GI11696-PA 504 GI11696-PA 36..500 31..507 355 27 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23230-PA 512 GL23230-PA 27..512 30..516 2280 87.3 Plus
Dper\GL22852-PA 504 GL22852-PA 36..500 31..507 351 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10979-PA 512 GA10979-PA 1..512 1..516 2250 84 Plus
Dpse\GA15270-PA 490 GA15270-PA 1..490 24..516 2037 76.1 Plus
Dpse\GA20345-PA 504 GA20345-PA 36..500 31..507 351 26.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22453-PA 516 GM22453-PA 1..516 1..516 2704 98.4 Plus
Dsec\GM11241-PA 268 GM11241-PA 1..197 24..222 791 75 Plus
Dsec\GM25722-PA 504 GM25722-PA 36..500 31..507 359 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15034-PA 516 GD15034-PA 1..516 1..516 2576 95.5 Plus
Dsim\GD24769-PA 94 GD24769-PA 1..94 423..516 447 87.2 Plus
Dsim\GD14729-PA 504 GD14729-PA 36..500 31..507 355 27.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11643-PA 517 GJ11643-PA 1..517 1..516 2236 83.5 Plus
Dvir\GJ16646-PA 556 GJ16646-PA 71..556 28..516 2032 76.9 Plus
Dvir\GJ11371-PA 504 GJ11371-PA 36..500 31..507 364 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24920-PA 550 GK24920-PA 63..550 26..516 2030 76.6 Plus
Dwil\GK16764-PA 466 GK16764-PA 1..435 1..441 1856 79.8 Plus
Dwil\GK12667-PA 504 GK12667-PA 24..500 24..507 351 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23284-PA 516 GE23284-PA 1..516 1..516 2668 97.3 Plus
Dyak\GE15773-PA 491 GE15773-PA 1..491 24..516 2033 76.3 Plus
Dyak\GE19931-PA 504 GE19931-PA 36..500 31..507 363 27.3 Plus

AT28243.hyp Sequence

Translation from 95 to 1645

> AT28243.hyp
MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE
AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV
HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN
SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI
TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF
DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS
DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG
DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV
GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ
KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS
ITKRSGRDPTPASCCS*

AT28243.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-PA 516 CG11401-PA 1..516 1..516 2690 100 Plus
Trxr-1-PA 491 CG2151-PA 1..491 24..516 1980 75.9 Plus
Trxr-1-PC 508 CG2151-PC 25..508 31..516 1979 76.8 Plus
Trxr-1-PB 596 CG2151-PB 113..596 31..516 1979 76.8 Plus
CG7430-PB 504 CG7430-PB 36..500 31..507 377 27.3 Plus