BDGP Sequence Production Resources |
Search the DGRC for AT28243
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 282 |
Well: | 43 |
Vector: | pOTB7 |
Associated Gene/Transcript | Trxr-2-RA |
Protein status: | AT28243.pep: gold |
Preliminary Size: | 1551 |
Sequenced Size: | 1812 |
Gene | Date | Evidence |
---|---|---|
CG11401 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11401 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11401 | 2003-08-12 | Blastp of sequenced clone |
Trxr-2 | 2008-04-29 | Release 5.5 accounting |
Trxr-2 | 2008-08-15 | Release 5.9 accounting |
Trxr-2 | 2008-12-18 | 5.12 accounting |
1812 bp (1812 high quality bases) assembled on 2003-08-12
GenBank Submission: AY121613
> AT28243.complete TAATAATTTCACAAGTTGGCAGTGCCGAGTCCTAAAATTCCGGTTTACCT TCTTTTCGACCTGAAATTTGTTCCCGTCCAATTTATCAGTCCAATATGTC GACGATAAAGTTTCTGCGATCCTCCACACACAACGCACTTCGGTCCAGCC TCGGATGGTGCCGCCTTGCTGCCTCAAGACCACGCTATGATTACGACCTT GTGGTGCTCGGCGGGGGCTCGGCGGGATTGGCGTGTGCCAAGGAGGCTGC TGGCTGTGGAGCCCGCGTGCTCTGCTTCGACTACGTCAAGCCCACTCCAG TGGGCACCAAGTGGGGCATCGGCGGCACCTGCGTGAATGTGGGCTGCATC CCCAAGAAGCTAATGCACCAGGCCTCGCTGCTGGGCGAGGCTGTTCACGA GGCGGTGGCCTACGGCTGGAATGTAGACGACACGAACATACGGCCCGATT GGCGCAAGTTGGTGCGCTCCGTCCAGAACCACATCAAGTCCGTCAACTGG GTGACCCGCGTGGACCTGCGCGACAAAAAGGTGGAGTACGTAAATTCGAT GGCCACCTTTCGCGACAGCCACACCATCGAGTATGTGGCGATGCCAGGTG CCGAGCACCGTCAAGTGACCTCAGAGTACGTGGTGGTAGCCGTCGGCGGG AGGCCACGCTACCCGGACATTCCCGGAGCCGTTGAACTGGGCATCACCAG CGACGATATATTCAGCTACGAGCGAGAGCCGGGTCGTACCCTTGTGGTGG GCGCCGGATACGTGGGTCTCGAGTGCGCCTGTTTCCTTAAGGGTCTCGGC TACGAGCCCACTGTCATGGTGCGCTCCATTGTGCTGCGCGGCTTCGATCG CCAGATGTCCGAGCTGCTGGCCGCCATGATGACTGAGCGCGGCATTCCCT TCCTGGGCACCACAATCCCCAAGGCCGTGGAGAGGCAGGCGGACGGACGG CTGCTAGTTCGGTACCGCAACACAACCACCCAAATGGACGGCAGCGACGT TTTCGACACCGTGCTGTGGGCCATTGGGCGCAAAGGTCTCATCGAGGACC TCAACCTGGACGCCGCCGGAGTGAAGACTCATGACGACAAGATTGTGGTA GACGCCGCGGAGGCCACCAGCGTGCCTCATATATTTGCAGTTGGGGACAT CATATATGGTCGACCAGAGCTAACGCCGGTGGCCATCCTGTCGGGCCGCC TGCTTGCCAGGCGTCTGTTCGCCGGCTCCACGCAGCTGATGGACTATGCC GACGTGGCAACCACAGTTTTTACTCCGCTAGAATACAGTTGCGTCGGCAT GTCGGAGGAAACGGCCATCGAACTGCGTGGTGCTGACAACATCGAGGTCT TCCACGGCTACTACAAGCCCACAGAGTTCTTTATTCCCCAGAAGAGCGTG CGTCACTGCTACCTCAAGGCCGTAGCCGAAGTGTCCGGGGACCAGAAGAT CCTTGGCCTGCACTACATCGGCCCAGTCGCCGGCGAGGTCATCCAGGGCT TCGCCGCAGCCCTCAAGACCGGCTTGACCGTAAAGACGCTTCTGAACACG GTGGGAATCCACCCCACCACCGCCGAAGAGTTCACCCGGCTGTCAATCAC CAAGCGATCTGGTCGGGATCCTACACCAGCCTCCTGTTGCAGTTAGTTCC GTGCCTTGGAGATAGGTATCTTGTGGTGAGAAACAAAGCATATTTCTTTC ACTTCAAGTATGTTTCAGTCCGTATCTACTGTCGATTTTAGTACGTGAAA GGCTACACACCATTTTCATTCTAATTAAAAAAAATTGGTCACTTAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trxr-2-RA | 1797 | Trxr-2-RA | 1..1796 | 1..1796 | 8980 | 100 | Plus |
Trxr-1.a | 1874 | Trxr-1.a | 522..787 | 639..904 | 490 | 78.9 | Plus |
Trxr-1.b | 1874 | Trxr-1.b | 522..787 | 639..904 | 490 | 78.9 | Plus |
Trxr-1.a | 1874 | Trxr-1.a | 193..322 | 301..430 | 455 | 90 | Plus |
Trxr-1.b | 1874 | Trxr-1.b | 193..322 | 301..430 | 455 | 90 | Plus |
Trxr-1.a | 1874 | Trxr-1.a | 1337..1525 | 1454..1642 | 330 | 78.3 | Plus |
Trxr-1.b | 1874 | Trxr-1.b | 1337..1525 | 1454..1642 | 330 | 78.3 | Plus |
Trxr-1.a | 1874 | Trxr-1.a | 332..428 | 443..539 | 320 | 88.6 | Plus |
Trxr-1.b | 1874 | Trxr-1.b | 332..428 | 443..539 | 320 | 88.6 | Plus |
Trxr-1.a | 1874 | Trxr-1.a | 1224..1312 | 1341..1429 | 310 | 89.8 | Plus |
Trxr-1.b | 1874 | Trxr-1.b | 1224..1312 | 1341..1429 | 310 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 22539134..22540927 | 1..1794 | 8970 | 100 | Plus |
chrX | 22417052 | chrX | 8138632..8139503 | 771..1642 | 805 | 72.8 | Plus |
chrX | 22417052 | chrX | 8137911..8138252 | 185..526 | 650 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 22543326..22545121 | 1..1796 | 8980 | 100 | Plus |
X | 23527363 | X | 8254315..8254444 | 301..430 | 455 | 90 | Plus |
X | 23527363 | X | 8254917..8255050 | 771..904 | 370 | 85 | Plus |
X | 23527363 | X | 8255600..8255788 | 1454..1642 | 330 | 78.3 | Plus |
X | 23527363 | X | 8255487..8255575 | 1341..1429 | 310 | 89.8 | Plus |
X | 23527363 | X | 8254454..8254537 | 443..526 | 285 | 89.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 22539134..22540927 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1551 | 96..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1551 | 96..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1551 | 96..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1551 | 96..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1551 | 96..1646 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1794 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1794 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1794 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1794 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trxr-2-RA | 1..1794 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 22550226..22552019 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 22550226..22552019 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 22550226..22552019 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 22543326..22545119 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 22543326..22545119 | 1..1794 | 100 | Plus |
Translation from 95 to 1645
> AT28243.pep MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS ITKRSGRDPTPASCCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23459-PA | 514 | GF23459-PA | 15..514 | 17..516 | 2383 | 88.6 | Plus |
Dana\GF19373-PA | 537 | GF19373-PA | 54..537 | 31..516 | 2017 | 76.6 | Plus |
Dana\GF24574-PA | 504 | GF24574-PA | 3..500 | 2..507 | 370 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16263-PA | 518 | GG16263-PA | 1..518 | 1..516 | 2623 | 95 | Plus |
Dere\GG19308-PA | 491 | GG19308-PA | 1..491 | 24..516 | 2021 | 75.5 | Plus |
Dere\GG13635-PA | 504 | GG13635-PA | 36..500 | 31..507 | 355 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16699-PA | 514 | GH16699-PA | 3..514 | 6..516 | 2196 | 82.8 | Plus |
Dgri\GH12753-PA | 596 | GH12753-PA | 106..596 | 23..516 | 2036 | 76.1 | Plus |
Dgri\GH17093-PA | 504 | GH17093-PA | 17..500 | 15..507 | 337 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trxr-2-PA | 516 | CG11401-PA | 1..516 | 1..516 | 2690 | 100 | Plus |
Trxr-1-PA | 491 | CG2151-PA | 1..491 | 24..516 | 1980 | 75.9 | Plus |
Trxr-1-PC | 508 | CG2151-PC | 25..508 | 31..516 | 1979 | 76.8 | Plus |
Trxr-1-PB | 596 | CG2151-PB | 113..596 | 31..516 | 1979 | 76.8 | Plus |
CG7430-PB | 504 | CG7430-PB | 36..500 | 31..507 | 377 | 27.3 | Plus |
CG7430-PA | 504 | CG7430-PA | 36..500 | 31..507 | 377 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11388-PA | 515 | GI11388-PA | 1..515 | 1..516 | 2219 | 83.6 | Plus |
Dmoj\GI15898-PA | 601 | GI15898-PA | 116..601 | 28..516 | 2040 | 76.9 | Plus |
Dmoj\GI11696-PA | 504 | GI11696-PA | 36..500 | 31..507 | 355 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23230-PA | 512 | GL23230-PA | 27..512 | 30..516 | 2280 | 87.3 | Plus |
Dper\GL22852-PA | 504 | GL22852-PA | 36..500 | 31..507 | 351 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10979-PA | 512 | GA10979-PA | 1..512 | 1..516 | 2250 | 84 | Plus |
Dpse\GA15270-PA | 490 | GA15270-PA | 1..490 | 24..516 | 2037 | 76.1 | Plus |
Dpse\GA20345-PA | 504 | GA20345-PA | 36..500 | 31..507 | 351 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22453-PA | 516 | GM22453-PA | 1..516 | 1..516 | 2704 | 98.4 | Plus |
Dsec\GM11241-PA | 268 | GM11241-PA | 1..197 | 24..222 | 791 | 75 | Plus |
Dsec\GM25722-PA | 504 | GM25722-PA | 36..500 | 31..507 | 359 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15034-PA | 516 | GD15034-PA | 1..516 | 1..516 | 2576 | 95.5 | Plus |
Dsim\GD24769-PA | 94 | GD24769-PA | 1..94 | 423..516 | 447 | 87.2 | Plus |
Dsim\GD14729-PA | 504 | GD14729-PA | 36..500 | 31..507 | 355 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11643-PA | 517 | GJ11643-PA | 1..517 | 1..516 | 2236 | 83.5 | Plus |
Dvir\GJ16646-PA | 556 | GJ16646-PA | 71..556 | 28..516 | 2032 | 76.9 | Plus |
Dvir\GJ11371-PA | 504 | GJ11371-PA | 36..500 | 31..507 | 364 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24920-PA | 550 | GK24920-PA | 63..550 | 26..516 | 2030 | 76.6 | Plus |
Dwil\GK16764-PA | 466 | GK16764-PA | 1..435 | 1..441 | 1856 | 79.8 | Plus |
Dwil\GK12667-PA | 504 | GK12667-PA | 24..500 | 24..507 | 351 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23284-PA | 516 | GE23284-PA | 1..516 | 1..516 | 2668 | 97.3 | Plus |
Dyak\GE15773-PA | 491 | GE15773-PA | 1..491 | 24..516 | 2033 | 76.3 | Plus |
Dyak\GE19931-PA | 504 | GE19931-PA | 36..500 | 31..507 | 363 | 27.3 | Plus |
Translation from 95 to 1645
> AT28243.hyp MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS ITKRSGRDPTPASCCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trxr-2-PA | 516 | CG11401-PA | 1..516 | 1..516 | 2690 | 100 | Plus |
Trxr-1-PA | 491 | CG2151-PA | 1..491 | 24..516 | 1980 | 75.9 | Plus |
Trxr-1-PC | 508 | CG2151-PC | 25..508 | 31..516 | 1979 | 76.8 | Plus |
Trxr-1-PB | 596 | CG2151-PB | 113..596 | 31..516 | 1979 | 76.8 | Plus |
CG7430-PB | 504 | CG7430-PB | 36..500 | 31..507 | 377 | 27.3 | Plus |