Clone AT28291 Report

Search the DGRC for AT28291

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:282
Well:91
Vector:pOTB7
Associated Gene/TranscriptCG14930-RA
Protein status:AT28291.pep: gold
Preliminary Size:747
Sequenced Size:884

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14930 2002-01-01 Sim4 clustering to Release 2
CG14930 2002-02-26 Blastp of sequenced clone
CG14930 2003-01-01 Sim4 clustering to Release 3
CG14930 2008-04-29 Release 5.5 accounting
CG14930 2008-08-15 Release 5.9 accounting
CG14930 2008-12-18 5.12 accounting

Clone Sequence Records

AT28291.complete Sequence

884 bp (884 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089470

> AT28291.complete
GCCTGTCAATCAATTACATTTGTAAAATGAACAAAAAACCAGAATACAAG
CTAAGCGAGCGCGACTTAGACATCCGCTCTGATCTGGAGTTCGTAGATGG
TATGCTGAAGGACCTGCAATTGGAGGTGGAGCCGCAGGCTCGTGGGGTCA
TCTTGGATCTGGCTTATACTTTGGCAAGGGACAAACTCGTCGAGGCTCAA
CGTTTCGCAAAGTTGGTCAATCGCACCAAAGTGAGTATCGAGGACTTGAA
GATGGCCAACCTGGAGCGGACAGAGGAGCTGAGCAAGAGAGCGATCCATA
CGCCGGTGAAGTCCCTTATTCCCAGCCAGGCATCTCTGCCCTCGCCGACT
GTGAGCCGTGGACTGATGCTGCCCACCTGGCGGCAGTGTCAGATGGGTAC
AATGGCCGAATTGAAGGACAAGGTCCCTGAGACTCAGCCACCGAATCCCA
AGCCCGTGCCGCCCCTAACACCGGTAACAGCTTCTACTCCTGGTCTAAAC
TCTGGCTCCAATTCGATGCTGACTACTGGATCTTCAAGCCCGGGTCTTAA
GGCTTCACACTCCCTTGCTCCTCCCATTGGCACCAAGGCGAATCTTTTCG
ACAATTTTACCTTGCCAACGATTTTACCCGATAGAGTTCGCAAGGATGCT
CGTGGTAGCGCAATAAGAAGTCATTCTACTCCTAGGATGTACATCAATAG
ATCCTATAGCTCGATGGCTGACGCAGCAGGAGGATCTCCCTCGGTCACAA
AGAAACCACGCATGCAACTATGAAATAATCGAAATCTTTAAAATTATAAT
ACTTTTATTACATTGGCAACTGTCAATTTATCGACGAGTTTGTGAATATT
TTTAATGTTAATTACCAAAAAAAAAAAAAAAAAA

AT28291.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14930-RA 866 CG14930-RA 1..866 1..866 4315 99.8 Plus
CG4970-RA 2533 CG4970-RA 1545..2144 768..169 2985 99.8 Minus
CG14929-RA 2533 CG14929-RA 1545..2144 768..169 2985 99.8 Minus
CG4970-RA 2533 CG4970-RA 2207..2374 168..1 840 100 Minus
CG14929-RA 2533 CG14929-RA 2207..2374 168..1 840 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11519083..11519780 866..169 3490 100 Minus
chr2L 23010047 chr2L 11519843..11520010 168..1 840 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11520354..11521055 870..169 3495 99.9 Minus
2L 23513712 2L 11521118..11521285 168..1 840 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11520354..11521055 870..169 3495 99.8 Minus
2L 23513712 2L 11521118..11521285 168..1 840 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:25:02 has no hits.

AT28291.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:25:43 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11519083..11519780 169..866 100 <- Minus
chr2L 11519843..11520010 1..168 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:54 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..747 27..773 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:54:14 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..747 27..773 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:17 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..747 27..773 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:36:45 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..747 27..773 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:09:52 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..747 27..773 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:06:57 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..866 1..866 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:54:14 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..866 1..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:17 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..866 1..866 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:36:45 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..866 1..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:09:52 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
CG14930-RA 1..866 1..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:43 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11520358..11521055 169..866 99 <- Minus
2L 11521118..11521285 1..168 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:43 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11520358..11521055 169..866 99 <- Minus
2L 11521118..11521285 1..168 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:43 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11520358..11521055 169..866 99 <- Minus
2L 11521118..11521285 1..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:17 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11520358..11521055 169..866 99 <- Minus
arm_2L 11521118..11521285 1..168 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:19:26 Download gff for AT28291.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11520358..11521055 169..866 99 <- Minus
2L 11521118..11521285 1..168 100   Minus

AT28291.hyp Sequence

Translation from 2 to 772

> AT28291.hyp
LSINYICKMNKKPEYKLSERDLDIRSDLEFVDGMLKDLQLEVEPQARGVI
LDLAYTLARDKLVEAQRFAKLVNRTKVSIEDLKMANLERTEELSKRAIHT
PVKSLIPSQASLPSPTVSRGLMLPTWRQCQMGTMAELKDKVPETQPPNPK
PVPPLTPVTASTPGLNSGSNSMLTTGSSSPGLKASHSLAPPIGTKANLFD
NFTLPTILPDRVRKDARGSAIRSHSTPRMYINRSYSSMADAAGGSPSVTK
KPRMQL*

AT28291.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14930-PA 248 CG14930-PA 1..248 9..256 1259 100 Plus

AT28291.pep Sequence

Translation from 26 to 772

> AT28291.pep
MNKKPEYKLSERDLDIRSDLEFVDGMLKDLQLEVEPQARGVILDLAYTLA
RDKLVEAQRFAKLVNRTKVSIEDLKMANLERTEELSKRAIHTPVKSLIPS
QASLPSPTVSRGLMLPTWRQCQMGTMAELKDKVPETQPPNPKPVPPLTPV
TASTPGLNSGSNSMLTTGSSSPGLKASHSLAPPIGTKANLFDNFTLPTIL
PDRVRKDARGSAIRSHSTPRMYINRSYSSMADAAGGSPSVTKKPRMQL*

AT28291.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21355-PA 949 GF21355-PA 9..127 13..130 308 47.1 Plus
Dana\GF14609-PA 215 GF14609-PA 8..82 3..77 251 62.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13087-PA 258 GG13087-PA 1..257 1..247 815 66.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18565-PA 158 GH18565-PA 6..137 8..143 210 33.1 Plus
Dgri\GH19028-PA 118 GH19028-PA 8..83 10..85 163 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14930-PA 248 CG14930-PA 1..248 1..248 1259 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22966-PA 158 GI22966-PA 6..132 7..137 277 40.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11960-PA 179 GL11960-PA 8..134 11..130 143 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11059-PA 250 GM11059-PA 1..250 1..248 1035 80.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22170-PA 250 GD22170-PA 1..250 1..248 1021 79.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23513-PA 157 GJ23513-PA 4..134 6..140 281 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24572-PA 99 GK24572-PA 5..68 13..76 165 46.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12840-PA 255 GE12840-PA 1..254 1..247 752 60.4 Plus