Clone AT28346 Report

Search the DGRC for AT28346

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:283
Well:46
Vector:pOTB7
Associated Gene/Transcriptp53-RB
Protein status:AT28346.pep: gold
Sequenced Size:1888

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33336 2002-09-18 Blastp of sequenced clone
p53 2008-04-29 Release 5.5 accounting
p53 2008-08-15 Release 5.9 accounting
p53 2008-12-18 5.12 accounting

Clone Sequence Records

AT28346.complete Sequence

1888 bp (1888 high quality bases) assembled on 2002-09-18

GenBank Submission: BT001357

> AT28346.complete
CCTGGAGCACTGAAGATTCTTGCGGACACAAATCGCAACTGCTAAATAAA
ATTTATTTATTTGAGTGCACAGCCATGAGTCTTCACAAGTCCGCGTCGTT
TAGCTTGACTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTC
GCACAATTTTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGC
AACGAAGTTTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTT
CAACTTGCCGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGG
CTACGCCTGTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATG
CAGTTCACGAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAA
TAACAAAATTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATT
CCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACG
GTGGAGGTATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCA
GGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGC
GCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAG
CTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGA
GCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACA
TCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATG
CCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGT
GAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGA
CGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGCAGCGAGAATCCC
AACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAATTTCCGAGCGTTT
TTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAACCCGCAGTGGGC
TCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAAAACTCGTGTATC
GGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAAAGCATGCGGCGA
TATCGTGGGACAGCATGTTATACATGTTAAAATATGTACGTGCCCCAAGC
GGGATCGCATCCAAGACGAACGCCAGCTCAATAGCAAGAAGCGCAAGTCC
GTGCCGGAAGCCGCCGAAGAAGATGAGCCGTCCAAGGTGCGTCGGTGCAT
TGCTATAAAGACGGAGGACACGGAGAGCAATGATAGCCGAGACTGCGACG
ACTCCGCCGCAGAGTGGAACGTGTCGCGGACACCGGATGGCGATTACCGT
CTGGCTATTACGTGCCCCAATAAGGAATGGCTGCTGCAGAGCATCGAGGG
CATGATTAAGGAGGCGGCGGCTGAAGTCCTGCGCAATCCCAACCAAGAGA
ATCTACGTCGCCATGCCAACAAATTGCTGAGCCTTAAGAAACGTGCCTAC
GAGCTGCCATGACTTCTGATCTGGTCGACAATCTCCCAGGTATCAGATAC
CTTTGAAATGTGTTGCATCTGTGGGGTATACTACATAGCTATTAGTATCT
TAAGTTTGTATTAGTCCTTGTTCGTAAGGCGTTTAACGGTGATATTCCCC
TTTTGGCATGTTCGATGGCCGAAAAGAAAACATTTTTATATTTTTGATAG
TATACTGTTGTTAACTGCAGTTCTATGTGACTACGTAACTTTTGTCTACC
ACAACAAACATACTCTGTACAAAAAAGCCAAAAGTGAATTTATTAAAGAG
TTGTCATATTTTGCAAACATAAAAAAAAAAAAAAAAAA

AT28346.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1886 p53-RB 17..1886 1..1870 9335 99.9 Plus
p53-RC 2171 p53-RC 667..2096 442..1871 7150 100 Plus
p53-RA 1705 p53-RA 201..1630 442..1871 7150 100 Plus
p53-RC 2171 p53-RC 1..442 1..442 2195 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18873456..18873851 1539..1144 1980 100 Minus
chr3R 27901430 chr3R 18873066..18873396 1870..1540 1655 100 Minus
chr3R 27901430 chr3R 18876991..18877314 442..119 1620 100 Minus
chr3R 27901430 chr3R 18874224..18874536 897..585 1505 98.7 Minus
chr3R 27901430 chr3R 18873913..18874159 1144..898 1205 99.2 Minus
chr3R 27901430 chr3R 18877374..18877491 118..1 575 99.2 Minus
chr3R 27901430 chr3R 18876527..18876609 524..442 415 100 Minus
chr3R 27901430 chr3R 18876421..18876457 560..524 185 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 1539..1144 1980 100 Minus
3R 32079331 3R 23049656..23049987 1871..1540 1660 100 Minus
3R 32079331 3R 23053582..23053905 442..119 1620 100 Minus
3R 32079331 3R 23050815..23051127 897..585 1565 100 Minus
3R 32079331 3R 23050504..23050750 1144..898 1235 100 Minus
3R 32079331 3R 23053965..23054082 118..1 575 99.2 Minus
3R 32079331 3R 23053118..23053200 524..442 415 100 Minus
3R 32079331 3R 23053012..23053048 560..524 185 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22790878..22791273 1539..1144 1980 100 Minus
3R 31820162 3R 22790487..22790818 1871..1540 1660 100 Minus
3R 31820162 3R 22794413..22794736 442..119 1620 100 Minus
3R 31820162 3R 22791646..22791958 897..585 1565 100 Minus
3R 31820162 3R 22791335..22791581 1144..898 1235 100 Minus
3R 31820162 3R 22794796..22794913 118..1 575 99.1 Minus
3R 31820162 3R 22793949..22794031 524..442 415 100 Minus
3R 31820162 3R 22793843..22793879 560..524 185 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:12:43 has no hits.

AT28346.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:13:23 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18876421..18876457 524..560 100 <- Minus
chr3R 18876528..18876608 443..523 100 <- Minus
chr3R 18873066..18873396 1540..1870 100 <- Minus
chr3R 18873456..18873850 1145..1539 100 <- Minus
chr3R 18873913..18874159 898..1144 99 <- Minus
chr3R 18874224..18874533 588..897 98 <- Minus
chr3R 18876331..18876357 561..587 100 <- Minus
chr3R 18876991..18877314 119..442 100 <- Minus
chr3R 18877374..18877491 1..118 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:26:59 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 75..1562 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:51 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 75..1562 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:13:03 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 75..1562 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:50 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 75..1562 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:37:37 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 75..1562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:38:08 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1870 1..1870 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:51 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1870 1..1870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:03 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1870 1..1870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:50 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1870 1..1870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:37:37 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1870 1..1870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:23 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23050047..23050441 1145..1539 100 <- Minus
3R 23050504..23050750 898..1144 100 <- Minus
3R 23049657..23049987 1540..1870 100 <- Minus
3R 23050815..23051124 588..897 100 <- Minus
3R 23052922..23052948 561..587 100 <- Minus
3R 23053012..23053048 524..560 100 <- Minus
3R 23053119..23053199 443..523 100 <- Minus
3R 23053582..23053905 119..442 100 <- Minus
3R 23053965..23054082 1..118 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:23 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23050047..23050441 1145..1539 100 <- Minus
3R 23050504..23050750 898..1144 100 <- Minus
3R 23049657..23049987 1540..1870 100 <- Minus
3R 23050815..23051124 588..897 100 <- Minus
3R 23052922..23052948 561..587 100 <- Minus
3R 23053012..23053048 524..560 100 <- Minus
3R 23053119..23053199 443..523 100 <- Minus
3R 23053582..23053905 119..442 100 <- Minus
3R 23053965..23054082 1..118 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:23 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23050047..23050441 1145..1539 100 <- Minus
3R 23050504..23050750 898..1144 100 <- Minus
3R 23049657..23049987 1540..1870 100 <- Minus
3R 23050815..23051124 588..897 100 <- Minus
3R 23052922..23052948 561..587 100 <- Minus
3R 23053012..23053048 524..560 100 <- Minus
3R 23053119..23053199 443..523 100 <- Minus
3R 23053582..23053905 119..442 100 <- Minus
3R 23053965..23054082 1..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:03 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18875379..18875709 1540..1870 100 <- Minus
arm_3R 18875769..18876163 1145..1539 100 <- Minus
arm_3R 18876226..18876472 898..1144 100 <- Minus
arm_3R 18876537..18876846 588..897 100 <- Minus
arm_3R 18878644..18878670 561..587 100 <- Minus
arm_3R 18878734..18878770 524..560 100 <- Minus
arm_3R 18878841..18878921 443..523 100 <- Minus
arm_3R 18879304..18879627 119..442 100 <- Minus
arm_3R 18879687..18879804 1..118 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:42 Download gff for AT28346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22790488..22790818 1540..1870 100 <- Minus
3R 22790878..22791272 1145..1539 100 <- Minus
3R 22791335..22791581 898..1144 100 <- Minus
3R 22791646..22791955 588..897 100 <- Minus
3R 22793753..22793779 561..587 100 <- Minus
3R 22793843..22793879 524..560 100 <- Minus
3R 22793950..22794030 443..523 100 <- Minus
3R 22794413..22794736 119..442 100 <- Minus
3R 22794796..22794913 1..118 99   Minus

AT28346.hyp Sequence

Translation from 2 to 1561

> AT28346.hyp
WSTEDSCGHKSQLLNKIYLFECTAMSLHKSASFSLTFNQNTSIVSRSNSR
TIFEAFKEFLDFWDIGNEVSAESAVRVSSNGAFNLPQSFGNESNEYAHLA
TPVDPAYGGNNTNNMMQFTNNLEILANNNSDGNNKINACNKFVCHKGTDS
EDDSTEVDIKEDIPKTVEVSGSELTTEPMAFLQGLNSGNLMQFSQQSVLR
EMMLQDIQIQANTLPKLENHNIGGYCFSMVLDEPPKSLWMYSIPLNKLYI
RMNKAFNVDVQFKSKMPIQPLNLRVFLCFSNDVSAPVVRCQNHLSVEPLT
ANNAKMRESLLRSENPNSVYCGNAQGKGISERFSVVVPLNMSRSVTRSGL
TRQTLAFKFVCQNSCIGRKETSLVFCLEKACGDIVGQHVIHVKICTCPKR
DRIQDERQLNSKKRKSVPEAAEEDEPSKVRRCIAIKTEDTESNDSRDCDD
SAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEAAAEVLRNPNQEN
LRRHANKLLSLKKRAYELP*

AT28346.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
p53-PB 495 CG33336-PB 1..495 25..519 2581 100 Plus
p53-PC 385 CG33336-PC 12..385 146..519 1935 99.5 Plus
p53-PA 385 CG33336-PA 12..385 146..519 1935 99.5 Plus
p53-PE 334 CG33336-PE 10..334 195..519 1695 99.7 Plus

AT28346.pep Sequence

Translation from 74 to 1561

> AT28346.pep
MSLHKSASFSLTFNQNTSIVSRSNSRTIFEAFKEFLDFWDIGNEVSAESA
VRVSSNGAFNLPQSFGNESNEYAHLATPVDPAYGGNNTNNMMQFTNNLEI
LANNNSDGNNKINACNKFVCHKGTDSEDDSTEVDIKEDIPKTVEVSGSEL
TTEPMAFLQGLNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGG
YCFSMVLDEPPKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLR
VFLCFSNDVSAPVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNA
QGKGISERFSVVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLV
FCLEKACGDIVGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEED
EPSKVRRCIAIKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNK
EWLLQSIEGMIKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELP*

AT28346.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18271-PA 368 GF18271-PA 14..368 151..495 1205 67.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12467-PA 508 GG12467-PA 1..508 1..495 2029 76.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18203-PA 359 GH18203-PA 1..329 155..488 1093 63.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
p53-PB 495 CG33336-PB 1..495 1..495 2581 100 Plus
p53-PC 385 CG33336-PC 12..385 122..495 1935 99.5 Plus
p53-PA 385 CG33336-PA 12..385 122..495 1935 99.5 Plus
p53-PE 334 CG33336-PE 10..334 171..495 1695 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10763-PA 351 GI10763-PA 2..351 153..495 1168 65.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27356-PA 386 GL27356-PA 14..361 151..490 1270 70.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27050-PA 386 GA27050-PA 14..361 151..490 1263 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23598-PA 489 GM23598-PA 1..489 1..495 2259 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18411-PA 489 GD18411-PA 1..489 1..495 2291 87.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14364-PA 349 GJ14364-PA 1..349 153..494 1150 63.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11606-PA 377 GK11606-PA 12..371 148..490 1151 62.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23990-PA 507 GE23990-PA 1..507 1..495 1978 76.5 Plus