Clone AT28366 Report

Search the DGRC for AT28366

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:283
Well:66
Vector:pOTB7
Associated Gene/TranscriptPpm1-RA
Protein status:AT28366.pep: gold
Preliminary Size:1203
Sequenced Size:1477

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12169 2002-01-01 Sim4 clustering to Release 2
CG12169 2002-02-26 Blastp of sequenced clone
CG12169 2003-01-01 Sim4 clustering to Release 3
Ppm1 2008-04-29 Release 5.5 accounting
Ppm1 2008-08-15 Release 5.9 accounting
Ppm1 2008-12-18 5.12 accounting

Clone Sequence Records

AT28366.complete Sequence

1477 bp (1477 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089472

> AT28366.complete
AGTCGAAGTAGGCTACCGAGTCAGTCGTCTAAATTCAAAAACCCCATTTG
GGCTATCAGAGACTGAATATACTATTTTTCTATAGTAGCTAAGAGGCGTG
CGTACCTGTAAAAGGACCATAACCCAACAGAATTCCGAATATAAGTTGAC
CGCCAGAAGGACAAACAGTTCACAATGGGACAGACACTGTCGGAACCAGT
GACCACCAAGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCT
CATCATGCATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCAC
ATTCTTTCCCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGA
CGGACACGGTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACA
AGTTCATTACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCC
TTGAAAAAGGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTC
CCTTGATGAGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGG
AGCGTCGCCTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGC
ATTTCTGGAATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGC
GAAGGAGTCCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATC
GGGTCAATGGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTAC
AAGAAGAACTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCC
CGACGTGGAGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGG
CCTGCGACGGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTC
GTGCACAAGCGCATACGCGATGGCATGGAGCCGGAACTCATTTGCGAGGA
ACTGATGAACAGCTGCTTGTCTCCGGATGGCCACACGGGCAATGTGGGCG
GCGACAACATGACCGTCATCCTGGTGTGCCTGCTGCACAACAAGAGCTAC
GAGGATCTGGCGGTGCGCTGCGGAGGCAAACGAAAGACCCCCGTTGAAAC
CGTAGGCGACATCCAGGATCAGTCGGTGAAGGTCGTAACTCCCTGTTCTC
AGGGATCTTCGGGGTCGTCGACTTCTCGATTGGGCCTGGGCTTCGGACTT
CGCGAAAGCGAAACTCCCGAGGCTAATCTTTAACTTTTGTTTTACCTTTT
ACATTTTTCATTACTGCATTTGTTTGCTCTTACTCTTAATGTACTTTTGT
ACTTTGATTGTCGATCCAGACGCTGTTGGCACTACAAAATTATCAGTCAA
CACATCACATTTCCCGGCAGTACAAATATAACACAATACACTACACTTTC
CCCCAACTAGCAGGGAAATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

AT28366.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1440 Ppm1-RA 19..1440 1..1422 7110 100 Plus
Ppm1.a 4689 Ppm1.a 3268..4689 1..1422 7110 100 Plus
CG17746-RB 1729 CG17746-RB 302..490 237..425 360 79.3 Plus
CG17746-RB 1729 CG17746-RB 683..804 621..742 265 81.1 Plus
CG17746-RB 1729 CG17746-RB 1056..1097 997..1038 150 90.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 581411..582666 167..1422 6205 99.6 Plus
chr3L 24539361 chr3L 581203..581360 1..168 625 92.9 Plus
chr3L 24539361 chr3L 3238051..3238303 425..173 410 77.5 Minus
chr3L 24539361 chr3L 3237198..3237319 742..621 265 81.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 581555..582812 167..1424 6290 100 Plus
3L 28110227 3L 581337..581504 1..168 840 100 Plus
3L 28110227 3L 3238643..3238895 425..173 410 77.5 Minus
3L 28110227 3L 3237790..3237911 742..621 265 81.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 581555..582812 167..1424 6290 100 Plus
3L 28103327 3L 581337..581504 1..168 840 100 Plus
3L 28103327 3L 3238643..3238831 425..237 360 79.3 Minus
3L 28103327 3L 3237790..3237911 742..621 265 81.1 Minus
3L 28103327 3L 3237420..3237461 1038..997 150 90.4 Minus
Blast to na_te.dros performed on 2019-03-16 08:15:51 has no hits.

AT28366.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:16:37 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 581203..581360 1..168 92 -> Plus
chr3L 581413..582666 169..1422 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:27:05 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1059 175..1233 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:21 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1059 175..1233 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:13:14 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1059 175..1233 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:30 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1059 175..1233 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:38:25 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1059 175..1233 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:06 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:21 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:14 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:30 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:38:25 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 1..1422 1..1422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:37 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
3L 581337..581504 1..168 100 -> Plus
3L 581557..582810 169..1422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:37 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
3L 581337..581504 1..168 100 -> Plus
3L 581557..582810 169..1422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:16:37 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
3L 581337..581504 1..168 100 -> Plus
3L 581557..582810 169..1422 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:14 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 581337..581504 1..168 100 -> Plus
arm_3L 581557..582810 169..1422 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:21 Download gff for AT28366.complete
Subject Subject Range Query Range Percent Splice Strand
3L 581557..582810 169..1422 100   Plus
3L 581337..581504 1..168 100 -> Plus

AT28366.pep Sequence

Translation from 174 to 1232

> AT28366.pep
MGQTLSEPVTTKDTACCANASYRVGSSCMQGWRVDMEDAHTHILSLPDDP
QAAFFAVYDGHGGASVAKYAGKHLHKFITKRPEYRDNSIEVALKKAFLDF
DREMLQNGSLDEQTAGCTAIVVLIRERRLYCANAGDSRAIACISGMVHAL
SVDHKPNDAKESKRIMASGGWVEFNRVNGNLALSRALGDFIYKKNLLKTP
EEQIVTAYPDVEVLDITEDLEFVLLACDGIWDVMSNFEVCQFVHKRIRDG
MEPELICEELMNSCLSPDGHTGNVGGDNMTVILVCLLHNKSYEDLAVRCG
GKRKTPVETVGDIQDQSVKVVTPCSQGSSGSSTSRLGLGFGLRESETPEA
NL*

AT28366.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24758-PA 349 GF24758-PA 1..334 1..338 1347 73.7 Plus
Dana\GF24378-PA 374 GF24378-PA 1..307 1..308 1159 67.9 Plus
Dana\GF20730-PA 366 GF20730-PA 1..278 1..286 509 39 Plus
Dana\GF23353-PA 371 GF23353-PA 1..284 1..286 452 36.6 Plus
Dana\GF18976-PA 707 GF18976-PA 400..571 115..284 414 48.8 Plus
Dana\GF18976-PA 707 GF18976-PA 1..103 1..105 236 46.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14729-PA 353 GG14729-PA 1..353 1..352 1571 84.4 Plus
Dere\GG14269-PA 370 GG14269-PA 1..297 1..299 1138 69.2 Plus
Dere\GG12191-PA 367 GG12191-PA 1..273 1..280 472 36.3 Plus
Dere\GG11671-PA 374 GG11671-PA 1..319 1..321 470 34.8 Plus
Dere\GG10863-PA 664 GG10863-PA 394..564 115..284 430 49.1 Plus
Dere\GG10863-PA 664 GG10863-PA 1..103 1..105 254 49.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16235-PA 323 GH16235-PA 1..321 1..320 1206 70.1 Plus
Dgri\GH15705-PA 335 GH15705-PA 1..304 1..305 1141 68.5 Plus
Dgri\GH18902-PA 371 GH18902-PA 1..284 1..286 476 37.2 Plus
Dgri\GH20157-PA 774 GH20157-PA 481..652 115..284 430 50.6 Plus
Dgri\GH23728-PA 302 GH23728-PA 9..180 115..284 426 50.6 Plus
Dgri\GH20157-PA 774 GH20157-PA 1..104 1..106 234 46.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-PA 352 CG12169-PA 1..352 1..352 1852 100 Plus
CG17746-PB 371 CG17746-PB 1..297 1..299 1110 68.9 Plus
CG17746-PA 371 CG17746-PA 1..297 1..299 1110 68.9 Plus
CG6036-PA 371 CG6036-PA 5..283 1..286 490 37.2 Plus
alph-PC 368 CG1906-PC 1..318 1..320 465 35.2 Plus
alph-PD 368 CG1906-PD 1..318 1..320 465 35.2 Plus
alph-PA 368 CG1906-PA 1..318 1..320 465 35.2 Plus
alph-PB 371 CG1906-PB 1..318 1..320 465 35.2 Plus
alph-PE 374 CG1906-PE 1..318 1..320 465 35.2 Plus
alph-PF 332 CG1906-PF 1..282 1..284 462 38.2 Plus
CG10417-PB 662 CG10417-PB 392..562 115..284 427 49.7 Plus
CG10417-PA 662 CG10417-PA 392..562 115..284 427 49.7 Plus
CG7115-PC 469 CG7115-PC 253..425 101..284 236 33.3 Plus
CG7115-PD 471 CG7115-PD 255..427 101..284 236 33.3 Plus
CG7115-PE 524 CG7115-PE 308..480 101..284 236 33.3 Plus
CG7115-PB 524 CG7115-PB 308..480 101..284 236 33.3 Plus
CG7115-PA 524 CG7115-PA 308..480 101..284 236 33.3 Plus
CG10417-PB 662 CG10417-PB 1..103 1..105 235 48.6 Plus
CG10417-PA 662 CG10417-PA 1..103 1..105 235 48.6 Plus
CG10376-PA 428 CG10376-PA 190..428 49..295 213 28.5 Plus
Pp2C1-PB 1427 CG2984-PB 237..522 4..245 210 27.8 Plus
Pp2C1-PA 1427 CG2984-PA 237..522 4..245 210 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12760-PA 328 GI12760-PA 1..304 1..305 1180 69.5 Plus
Dmoj\GI16663-PA 329 GI16663-PA 1..302 1..302 1146 71.2 Plus
Dmoj\GI23119-PA 371 GI23119-PA 1..284 1..286 461 36.6 Plus
Dmoj\GI20667-PA 747 GI20667-PA 434..618 99..284 431 48.4 Plus
Dmoj\GI21350-PA 520 GI21350-PA 305..494 101..302 283 34.3 Plus
Dmoj\GI20667-PA 747 GI20667-PA 1..104 1..106 247 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21276-PA 375 GL21276-PA 1..307 1..308 1179 69.2 Plus
Dper\GL22499-PA 319 GL22499-PA 1..306 1..306 1166 69.3 Plus
Dper\GL22500-PA 319 GL22500-PA 1..306 1..306 1147 68.6 Plus
Dper\GL26287-PA 366 GL26287-PA 1..279 1..286 471 37.5 Plus
Dper\GL13894-PA 370 GL13894-PA 1..283 1..286 453 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14642-PA 375 GA14642-PA 1..307 1..308 1179 69.2 Plus
Dpse\GA24456-PA 319 GA24456-PA 1..306 1..306 1164 69.3 Plus
Dpse\GA24460-PA 319 GA24460-PA 1..306 1..306 1153 69 Plus
Dpse\GA28805-PA 366 GA28805-PA 1..279 1..286 469 37.5 Plus
Dpse\GA15122-PA 370 GA15122-PA 1..283 1..286 453 36.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14345-PA 353 GM14345-PA 1..353 1..352 1729 94.3 Plus
Dsec\GM14062-PA 370 GM14062-PA 1..312 1..312 1149 67.2 Plus
Dsec\GM12795-PA 374 GM12795-PA 1..318 1..320 469 35.2 Plus
Dsec\GM13564-PA 319 GM13564-PA 1..284 1..286 466 37.2 Plus
Dsec\GM11092-PA 662 GM11092-PA 390..562 113..284 445 49.7 Plus
Dsec\GM11092-PA 662 GM11092-PA 1..103 1..105 247 48.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17616-PA 353 GD17616-PA 1..353 1..352 1693 92.4 Plus
Dsim\GD13337-PA 370 GD13337-PA 1..312 1..312 1149 67.2 Plus
Dsim\GD21442-PA 374 GD21442-PA 1..318 1..320 469 35.2 Plus
Dsim\GD18139-PA 305 GD18139-PA 29..211 90..280 359 38.2 Plus
Dsim\GD23491-PA 524 GD23491-PA 308..488 101..293 252 33.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12915-PA 335 GJ12915-PA 1..314 1..313 1231 72 Plus
Dvir\GJ15526-PA 329 GJ15526-PA 1..298 1..299 1154 69.9 Plus
Dvir\GJ10608-PA 371 GJ10608-PA 1..284 1..286 463 36.6 Plus
Dvir\GJ20416-PA 729 GJ20416-PA 448..621 113..284 421 49.4 Plus
Dvir\GJ11141-PA 520 GJ11141-PA 307..519 101..322 277 32.6 Plus
Dvir\GJ20416-PA 729 GJ20416-PA 1..103 1..105 238 47.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16640-PA 378 GK16640-PA 11..324 1..314 1252 72.3 Plus
Dwil\GK10512-PA 391 GK10512-PA 1..298 1..299 1168 70.2 Plus
Dwil\GK11903-PA 371 GK11903-PA 1..284 1..286 462 36.9 Plus
Dwil\GK22356-PA 170 GK22356-PA 2..157 163..323 436 54.7 Plus
Dwil\GK10630-PA 721 GK10630-PA 439..615 113..287 414 46.9 Plus
Dwil\GK10630-PA 721 GK10630-PA 1..103 1..105 226 45.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21091-PA 358 GE21091-PA 1..358 1..352 1578 83 Plus
Dyak\GE20697-PA 370 GE20697-PA 1..366 1..351 1150 60.6 Plus
Dyak\GE10634-PA 367 GE10634-PA 1..273 1..280 485 37.2 Plus
Dyak\GE23859-PA 374 GE23859-PA 1..319 1..321 470 34.8 Plus
Dyak\GE11243-PA 634 GE11243-PA 362..534 113..284 433 49.1 Plus
Dyak\GE11243-PA 634 GE11243-PA 1..103 1..105 252 49.5 Plus

AT28366.hyp Sequence

Translation from 174 to 1232

> AT28366.hyp
MGQTLSEPVTTKDTACCANASYRVGSSCMQGWRVDMEDAHTHILSLPDDP
QAAFFAVYDGHGGASVAKYAGKHLHKFITKRPEYRDNSIEVALKKAFLDF
DREMLQNGSLDEQTAGCTAIVVLIRERRLYCANAGDSRAIACISGMVHAL
SVDHKPNDAKESKRIMASGGWVEFNRVNGNLALSRALGDFIYKKNLLKTP
EEQIVTAYPDVEVLDITEDLEFVLLACDGIWDVMSNFEVCQFVHKRIRDG
MEPELICEELMNSCLSPDGHTGNVGGDNMTVILVCLLHNKSYEDLAVRCG
GKRKTPVETVGDIQDQSVKVVTPCSQGSSGSSTSRLGLGFGLRESETPEA
NL*

AT28366.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-PA 352 CG12169-PA 1..352 1..352 1852 100 Plus
CG17746-PB 371 CG17746-PB 1..297 1..299 1110 68.9 Plus
CG17746-PA 371 CG17746-PA 1..297 1..299 1110 68.9 Plus
CG6036-PA 371 CG6036-PA 5..283 1..286 490 37.2 Plus
alph-PC 368 CG1906-PC 1..318 1..320 465 35.2 Plus