Clone AT28382 Report

Search the DGRC for AT28382

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:283
Well:82
Vector:pOTB7
Associated Gene/TranscriptCG16854-RC
Protein status:AT28382.pep: gold
Preliminary Size:2397
Sequenced Size:2371

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16854 2002-01-01 Sim4 clustering to Release 2
CG16854 2002-05-30 Blastp of sequenced clone
CG16854 2003-01-01 Sim4 clustering to Release 3
CG16854 2008-04-29 Release 5.5 accounting
CG16854 2008-08-15 Release 5.9 accounting
CG16854 2008-12-18 5.12 accounting

Clone Sequence Records

AT28382.complete Sequence

2371 bp (2371 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118291

> AT28382.complete
AATCGTTTCCTTGTTGCTATTCAACAGAAGCAAATATCTGCTGGATCCGA
AGTTTATGACCAAGAGGGACCTACAGCAGTACTATCGCTACTACAACATG
AACAAGAACCGTGGACAATTCAAGAAGGTTGTGATTGTGATCTTCGCCCT
CTGCGTGTTTTCCTACCTATGTGTGGACTACAATCTGAGGACGAAACTAC
TTCGTTTCCGTGATGGATTCGATTTTATGGCCCGCATCGAGGACCACTAT
GGTGGAAATGTGACAACGGCCTATTTCGTTGACACGACGGGCTGCCGGAT
GCCACACTTTGAGGTCAGCGACGACACCATTGCCCAGTTCATTTTCAAGC
CACGTCCGTACAGCTGCAACAGAGCTCTGATCCGGACGAGCGACACAATT
CCCGGACAGCTGCATCTCAATCTGGAGGCCAGTGAGCTGCTCGCATACTA
CAACATCAGTGACCTGTCCTCCGTTAATTGCAACTATACGGAGGTGAAGC
GCAAAACCGATTCTAGTAACACCCACAGTCCGGCAGTGAGTTTTAAGCTG
GACAAAGTTATGAAACTGCCTCTCAGCTCGGAGTTCATTTGCATGTGGTG
CTATGATTCACTGGACAAACTCTTCTACAAGGACTGTCATTTTTTTGCAG
TCGATAAGCCAAGGATTAGGCCCCCACTTAAGACTGGAACCGATAGGGTG
AGCTTCAACAAGAGCAAGGAGGAGCAGGAACGGCTATCCGTAATGATACT
CGGCATGGATAGCCTGTCGCATCTAAATTTCCTGCGCCAGATGCGCCGCA
CAGCGAACTACGTCCGTAAGCATCTGTCCCACGTGGAATTTTGGGGCTAC
AACAAGGTGGGCGACAATACGTTTCCCAATCTCGTGCCCCTGCTAAGTGG
CCTGGATGATCAGGAACTGAATCTGGCCTGCACGCCAAAGACATTGCGAT
CCTATGATAGGTGCTCATTCATTTGGAAACGCTACCAGCAACTGGGTTAT
CGCTCCATTTTCGCCGAGGATGTGGCAATGCTCTCGGCATTCAATTACAA
TCAAAATGGGTTCCGAAAGCAGCCAACGGATTATTATCTGCGACCCATGA
TTATGGAAATGGAAAAGACTGTGGCCTTCAAGAAGGACCTCAACATGCAC
TTGTGCATGGGCAGCCGGAGGACGGCGGATGTGCTGCTCGAGTATATGAA
GAAATTGGTGCCACGAATGAGCAGGGATCTTTACTTTTCATTTTTTTGGA
CGGTGGCCCTAACCCATGACTATTTTAATTTCCCCTCACTACTGGATGAG
GCCATGTTGCAACAGTTGATGCAGCTGCAAGATTCCGGATTGCTCAATCG
CACGGTGGTAATGTTGCTATCCGATCACGGACTGAGATGGGGTTCCTTTC
GTCGTACCTACCAGGGCATGATGGAGGAGCGCCAGCCCCTAATGATGCTT
TTGTATCCGCCATGGATGACCGAGCGTTATCCGGAGGCAATTGCCAATCT
TAGGTTAAATGCCCGCCGGCTAACCACACCATTTGATGTGCACGCGACAA
TGTTGCAGCTGCTAAATCTTCACAATCTGGAGGCAGATCAGTTGCAACGC
AGATCAACAGAGATGGACGAGCCGGATAGCACGCTGCCCAGAGGCATTAG
CCTATTCCTGCCCATCCCGGCTGCTCGGACCTGCGAGCAGGCAGGGATTG
CCGCCCACTGGTGCACCTGCCATCAGCGCCAGGAGCTGCAGACAAACGAT
CCACGTGTCCAGCGGGCGGCGCGCTATCTGGTACGCTTGATCAATAACCG
ACTGAAGGATAGCTCACAGTGCAGAACCCTATACCTGAACTCCATACTCC
AGGCTCTGATTGCAGCGCCGCACTCGAAGATTGTGAAGAACATTTCCACG
GACTACGCAGTGGACATCACCCTGCGACTGCAGACGAAGCCCGGGCTGGG
TGTGTTTGAGTCCACGGTGCGGATGACGGGCTATACGACCGTACTAACGG
GCACCATTAGTCGTCTGAATCTGTACGGAAGCCAGAGCTACTGTCTCAAC
GATCCGGCGCTAAAAATGTTCTGCTATTGCCACAGATAAGGCAATGGCAA
TGTAACTGGGAGCTTTCGGGGATGGGGAGGATGTGTTTGACGTCAAAGAC
TTGAAACCCATTAACGTAGCCTTAGCCATAAAACCTAGTTTATTTCTATG
AAATAGCCAATGTTTGTATAAAAATACTTATCCAATTTTAGCCTTTGCCG
TAAGGAGTTCCCAGTCTTAGGCACCTATGTAGTCACGGTAGTTGAGCGGA
ATTTGTTTATTTCCCACTAACTTAGAGGACAATAAACTGAATGAACTAAT
AAAAAAAAAAAAAAAAAAAAA

AT28382.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16854-RA 2452 CG16854-RA 1..2352 1..2352 11760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11087085..11089434 1..2350 11750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11088331..11090682 1..2352 11760 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11088331..11090682 1..2352 11760 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:35:48 has no hits.

AT28382.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:36:51 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11087085..11089434 1..2350 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:27:07 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RA 1..2034 56..2089 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:50 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RB 57..2118 28..2089 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:37 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RD 57..2118 28..2089 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:29 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RA 1..2034 56..2089 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:05:12 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RD 57..2118 28..2089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:05 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RA 1..2350 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:50 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RB 433..2755 28..2350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:37 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RC 1..2350 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:29 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RA 1..2350 1..2350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:05:12 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
CG16854-RC 1..2350 1..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:51 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11088331..11090680 1..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:51 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11088331..11090680 1..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:51 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11088331..11090680 1..2350 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:37 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11088331..11090680 1..2350 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:00 Download gff for AT28382.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11088331..11090680 1..2350 100   Plus

AT28382.hyp Sequence

Translation from 1 to 2088

> AT28382.hyp
IVSLLLFNRSKYLLDPKFMTKRDLQQYYRYYNMNKNRGQFKKVVIVIFAL
CVFSYLCVDYNLRTKLLRFRDGFDFMARIEDHYGGNVTTAYFVDTTGCRM
PHFEVSDDTIAQFIFKPRPYSCNRALIRTSDTIPGQLHLNLEASELLAYY
NISDLSSVNCNYTEVKRKTDSSNTHSPAVSFKLDKVMKLPLSSEFICMWC
YDSLDKLFYKDCHFFAVDKPRIRPPLKTGTDRVSFNKSKEEQERLSVMIL
GMDSLSHLNFLRQMRRTANYVRKHLSHVEFWGYNKVGDNTFPNLVPLLSG
LDDQELNLACTPKTLRSYDRCSFIWKRYQQLGYRSIFAEDVAMLSAFNYN
QNGFRKQPTDYYLRPMIMEMEKTVAFKKDLNMHLCMGSRRTADVLLEYMK
KLVPRMSRDLYFSFFWTVALTHDYFNFPSLLDEAMLQQLMQLQDSGLLNR
TVVMLLSDHGLRWGSFRRTYQGMMEERQPLMMLLYPPWMTERYPEAIANL
RLNARRLTTPFDVHATMLQLLNLHNLEADQLQRRSTEMDEPDSTLPRGIS
LFLPIPAARTCEQAGIAAHWCTCHQRQELQTNDPRVQRAARYLVRLINNR
LKDSSQCRTLYLNSILQALIAAPHSKIVKNISTDYAVDITLRLQTKPGLG
VFESTVRMTGYTTVLTGTISRLNLYGSQSYCLNDPALKMFCYCHR*

AT28382.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16854-PB 705 CG16854-PB 20..705 10..695 3638 100 Plus
CG16854-PD 705 CG16854-PD 20..705 10..695 3638 100 Plus
CG16854-PC 677 CG16854-PC 1..677 19..695 3590 100 Plus
CG3123-PA 634 CG3123-PA 13..633 47..693 986 34.2 Plus
CG11630-PA 631 CG11630-PA 34..630 80..693 901 36.7 Plus

AT28382.pep Sequence

Translation from 55 to 2088

> AT28382.pep
MTKRDLQQYYRYYNMNKNRGQFKKVVIVIFALCVFSYLCVDYNLRTKLLR
FRDGFDFMARIEDHYGGNVTTAYFVDTTGCRMPHFEVSDDTIAQFIFKPR
PYSCNRALIRTSDTIPGQLHLNLEASELLAYYNISDLSSVNCNYTEVKRK
TDSSNTHSPAVSFKLDKVMKLPLSSEFICMWCYDSLDKLFYKDCHFFAVD
KPRIRPPLKTGTDRVSFNKSKEEQERLSVMILGMDSLSHLNFLRQMRRTA
NYVRKHLSHVEFWGYNKVGDNTFPNLVPLLSGLDDQELNLACTPKTLRSY
DRCSFIWKRYQQLGYRSIFAEDVAMLSAFNYNQNGFRKQPTDYYLRPMIM
EMEKTVAFKKDLNMHLCMGSRRTADVLLEYMKKLVPRMSRDLYFSFFWTV
ALTHDYFNFPSLLDEAMLQQLMQLQDSGLLNRTVVMLLSDHGLRWGSFRR
TYQGMMEERQPLMMLLYPPWMTERYPEAIANLRLNARRLTTPFDVHATML
QLLNLHNLEADQLQRRSTEMDEPDSTLPRGISLFLPIPAARTCEQAGIAA
HWCTCHQRQELQTNDPRVQRAARYLVRLINNRLKDSSQCRTLYLNSILQA
LIAAPHSKIVKNISTDYAVDITLRLQTKPGLGVFESTVRMTGYTTVLTGT
ISRLNLYGSQSYCLNDPALKMFCYCHR*

AT28382.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15639-PA 710 GF15639-PA 29..710 1..677 2837 74.6 Plus
Dana\GF14010-PA 676 GF14010-PA 25..674 65..675 964 34 Plus
Dana\GF23172-PA 651 GF23172-PA 64..650 75..677 861 32.2 Plus
Dana\GF23862-PA 633 GF23862-PA 35..633 66..677 806 32.6 Plus
Dana\GF21500-PA 622 GF21500-PA 172..620 222..675 789 35.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23704-PA 705 GG23704-PA 29..705 1..677 3602 97.3 Plus
Dere\GG24486-PA 633 GG24486-PA 51..632 74..675 987 34.9 Plus
Dere\GG21477-PA 631 GG21477-PA 29..630 56..675 892 34.7 Plus
Dere\GG24572-PA 673 GG24572-PA 34..671 66..675 889 33.5 Plus
Dere\GG18499-PA 643 GG18499-PA 101..642 119..675 829 33.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10304-PA 708 GH10304-PA 29..708 1..677 2640 69.9 Plus
Dgri\GH10450-PA 1018 GH10450-PA 423..1017 69..675 1181 38.7 Plus
Dgri\GH17532-PA 1146 GH17532-PA 551..1145 69..675 1159 38 Plus
Dgri\GH10451-PA 639 GH10451-PA 46..638 69..675 1149 38.1 Plus
Dgri\GH17533-PA 593 GH17533-PA 4..592 73..675 1135 38.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16854-PB 705 CG16854-PB 29..705 1..677 3590 100 Plus
CG16854-PD 705 CG16854-PD 29..705 1..677 3590 100 Plus
CG16854-PC 677 CG16854-PC 1..677 1..677 3590 100 Plus
CG3123-PA 634 CG3123-PA 13..633 29..675 986 34.2 Plus
CG11630-PA 631 CG11630-PA 34..630 62..675 901 36.7 Plus
CG31933-PA 673 CG31933-PA 34..671 66..675 890 33 Plus
CG14731-PA 641 CG14731-PA 9..640 21..675 834 31.9 Plus
CG1428-PA 617 CG1428-PA 87..616 124..675 768 33.4 Plus
CG7120-PG 701 CG7120-PG 101..698 68..677 762 29.9 Plus
CG7120-PF 701 CG7120-PF 101..698 68..677 762 29.9 Plus
CG7120-PE 686 CG7120-PE 87..683 69..677 761 30 Plus
CG7120-PD 686 CG7120-PD 87..683 69..677 761 30 Plus
CG15695-PA 725 CG15695-PA 156..725 73..675 730 29.3 Plus
CG10730-PC 644 CG10730-PC 31..636 73..675 718 30.9 Plus
CG9168-PB 648 CG9168-PB 40..644 73..675 678 29.7 Plus
CG6236-PA 680 CG6236-PA 56..678 80..675 662 30 Plus
CG6236-PB 680 CG6236-PB 56..678 80..675 662 30 Plus
CG9988-PA 668 CG9988-PA 62..661 69..675 625 28.6 Plus
CG32984-PB 650 CG32984-PB 51..640 73..675 601 27.1 Plus
CG18088-PC 663 CG18088-PC 60..658 73..675 579 26.7 Plus
CG18088-PB 663 CG18088-PB 60..658 73..675 579 26.7 Plus
CG18088-PA 663 CG18088-PA 60..658 73..675 579 26.7 Plus
CG32985-PB 644 CG32985-PB 99..635 119..675 576 27.3 Plus
CG9525-PB 659 CG9525-PB 106..609 136..675 362 24.2 Plus
CG9525-PA 678 CG9525-PA 106..628 136..675 351 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16022-PA 716 GI16022-PA 29..716 1..677 2395 64.4 Plus
Dmoj\GI17703-PA 644 GI17703-PA 50..640 69..675 1050 36.4 Plus
Dmoj\GI17448-PA 642 GI17448-PA 22..627 66..675 789 30.4 Plus
Dmoj\GI10599-PA 583 GI10599-PA 46..576 136..675 772 31 Plus
Dmoj\GI10601-PA 589 GI10601-PA 4..584 73..675 766 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19540-PA 742 GL19540-PA 65..742 1..677 2991 77.9 Plus
Dper\GL19659-PA 645 GL19659-PA 5..643 18..675 1065 35.7 Plus
Dper\GL19661-PA 644 GL19661-PA 9..642 22..675 1014 35.5 Plus
Dper\GL19660-PA 530 GL19660-PA 14..530 25..558 945 37.8 Plus
Dper\GL19066-PA 650 GL19066-PA 21..649 69..675 935 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14180-PA 750 GA14180-PA 73..750 1..677 2990 77.9 Plus
Dpse\GA16575-PA 645 GA16575-PA 5..643 18..675 1077 35.9 Plus
Dpse\GA26048-PA 644 GA26048-PA 9..642 22..675 1004 35.5 Plus
Dpse\GA11110-PA 573 GA11110-PA 47..572 138..675 916 37.2 Plus
Dpse\GA26047-PA 530 GA26047-PA 14..530 25..558 903 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18862-PA 705 GM18862-PA 29..705 1..677 3617 97.6 Plus
Dsec\GM18193-PA 634 GM18193-PA 51..633 74..675 995 35 Plus
Dsec\GM16126-PA 631 GM16126-PA 33..630 61..675 907 36.2 Plus
Dsec\GM16586-PA 673 GM16586-PA 34..671 66..675 888 32 Plus
Dsec\GM23986-PA 641 GM23986-PA 9..640 21..675 830 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23760-PA 663 GD23760-PA 1..663 15..677 3546 97.9 Plus
Dsim\GD22799-PA 634 GD22799-PA 51..633 74..675 1002 35 Plus
Dsim\GD21627-PA 631 GD21627-PA 33..630 61..675 909 36.2 Plus
Dsim\GD22892-PA 673 GD22892-PA 34..671 66..675 896 32.1 Plus
Dsim\GD18788-PA 641 GD18788-PA 9..640 21..675 836 31.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10531-PA 704 GJ10531-PA 29..704 1..677 2520 67.1 Plus
Dvir\GJ11409-PA 635 GJ11409-PA 45..634 69..675 1248 39.3 Plus
Dvir\GJ11419-PA 600 GJ11419-PA 9..599 70..675 1210 40.1 Plus
Dvir\GJ22955-PA 647 GJ22955-PA 58..641 70..675 768 29.6 Plus
Dvir\GJ12972-PA 690 GJ12972-PA 144..685 121..675 760 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18361-PA 711 GK18361-PA 29..711 1..677 2572 66.8 Plus
Dwil\GK18362-PA 449 GK18362-PA 227..447 454..675 864 68.9 Plus
Dwil\GK17756-PA 715 GK17756-PA 184..709 138..675 783 33.4 Plus
Dwil\GK22473-PA 560 GK22473-PA 123..558 224..675 717 34.1 Plus
Dwil\GK15328-PA 651 GK15328-PA 30..625 73..676 660 28.9 Plus
Dwil\GK18362-PA 449 GK18362-PA 24..223 9..213 485 45.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18511-PA 705 GE18511-PA 29..705 1..677 3578 96.8 Plus
Dyak\GE15011-PA 633 GE15011-PA 51..632 74..675 936 33.4 Plus
Dyak\GE15367-PA 673 GE15367-PA 34..671 66..675 893 32 Plus
Dyak\GE12978-PA 631 GE12978-PA 29..630 56..675 891 35.9 Plus
Dyak\GE24210-PA 642 GE24210-PA 100..641 119..675 856 33.6 Plus