Clone AT28535 Report

Search the DGRC for AT28535

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:285
Well:35
Vector:pOTB7
Associated Gene/TranscriptPP2A-B'-RC
Protein status:AT28535.pep: gold
Sequenced Size:1842

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
PP2A-B'-RC 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT28535.complete Sequence

1842 bp assembled on 2009-08-03

GenBank Submission: BT089024.1

> AT28535.complete
AACCGTTGACATGGGAAAAGATAATCAGATAAGTGTCATTTATGCCCCTT
TGCAGGCTAACAAACTCAAGGACAACACACCACCGTACGATGCACCGCCG
CCCACGCCGATCAGCAAGGTCCTGAACATCACCGGCACTCCGATCGTTCG
CAAGGAGAAGCGCCAGACCAGCGCCCGGTACAATGCCTCCAAGAACTGCG
AACTGACGGCCCTCATTCCGCTAAACGAGAAGACCGCCGCCAGTGAACGT
GAGGAGCTGTTCATACAGAAGATCCAGCAATGCTGCACACTGTTCGACTT
CTCCGAGCCGCTCAGCGACCTCAAGTTCAAGGAGGTGAAGCGGGCGGCTC
TGCACGAAATGGTCGATTTCCTCACCAACCAAAATGGCGTAATAACCGAA
GTTATTTACCCGGAGGCGATCAATATGTTTGCTGTCAACCTTTTCCGAAC
TCTGCCGCCATCGTCCAACCCGAATGGTGCCGAATTCGATCCGGAGGAGG
ATGAGCCCACGTTGGAGTCCTCGTGGCCGCATCTGCAACTCGTTTACGAG
CTGTTCTTGCGCTTCTTGGAGTCACCAGATTTTCAACCAAGCATGGCAAA
ACGTTTTATCGACCATCAATTTGTATTACAACTATTGGATTTATTCGATT
CGGAGGATCCACGTGAACGTGATTTCCTGAAGACTGTTTTACATCGCATC
TATGGAAAATTTTTGGGCTTGAGAGCATTTATTAGAAAGCAGATCAACAA
TGTCTTTTACAGATTTATTTATGAAACGGAGCATCATAATGGCATAGCCG
AATTGTTGGAAATCCTGGGTAGCATTATCAATGGCTTTGCTCTGCCGCTT
AAGGAGGAGCATAAACAATTTTTACTTAAGGTATTGCTGCCATTGCACAA
AGCCAAGAGCCTCTCGGTCTACCATCCGCAGCTCACCTATTGTGTGGTGC
AGTTCCTGGAGAAGGATCCTAGCTTATCGGAGGCGGTCATCAAAAGCCTA
CTTAAATTTTGGCCCAAGACGCACAGTCCCAAGGAGGTTATGTTTTTGAA
CGAGCTGGAGGAGCTGTTGGACGTAATTGAGCCGGCCGAGTTCCAGAAGG
TGATGGTGCCGCTGTTCCGCCAAATAGCCAAGTGCGTCTCTTCGCCTCAT
TTCCAGGTGGCCGAGCGTGCGTTGTACTATTGGAACAACGAGTACATTAT
GTCGCTGATAACGGATAACTCGGCGGTGATATTACCCATTATGTTCCCAG
CGCTCAATCGCAACTCAAAGACGCACTGGAACAAGACCATCCATGGTCTG
ATCTACAATGCACTCAAGCTGTTCATGGAGATAGATCAGCGGCTTTTCGA
CGAGTGCAGCAAGAACTACAAGCAAGAGAAGCAGATGGAGCGTGAGAAGC
TGTCGCAAAGGGAGGAGCTCTGGCAACAGGTGGAGAGCTTGGCCAAGACC
AACCCGGAGTGGACAAAGGCGCGCCGGTTTAACGACTGCCTGCCGGTCAG
CGACAGCCGGGCCCTGTGCGATCAATATAGTGAGAACAGCGATTCAGCGT
ATGATCAGAGCGAGCAGAGGGCGCGCCAGCCGCCGCCTCCGCTGCCGCCA
CAGAAACAGGCGCACCAGGAGCCCCGAGAGGTGAGACAGGCACTTGCCAC
ATTAACAACACTAAACAACTACTAATCCGCCACGTGTGATCCTGGCGTCG
CTGTGAGCTGTGCCCAGCTAAGGCCCACTCTGTTTCAACTCTAATTCTAA
TCGAACGAATGTCTGTTAAAATAATCACACTCATGTCATTTAAAAAAAAA
AAATACATATTTGTATATCTTTAAAAAAAAAAAAAAAAAAAA

AT28535.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
PP2A-B'-RC 1832 PP2A-B'-RC 10..1832 1..1822 9030 99.7 Plus
PP2A-B'.a 1825 PP2A-B'.a 6..1825 1..1822 8960 99.6 Plus
PP2A-B'.h 1907 PP2A-B'.h 138..1907 54..1822 8765 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14001167..14001602 1387..1822 2165 99.8 Plus
chr3R 27901430 chr3R 14000671..14001064 994..1387 1940 99.5 Plus
chr3R 27901430 chr3R 13999966..14000301 427..762 1680 100 Plus
chr3R 27901430 chr3R 14000366..14000598 761..993 1150 99.6 Plus
chr3R 27901430 chr3R 13995840..13996069 1..230 1135 99.6 Plus
chr3R 27901430 chr3R 13999697..13999893 231..427 985 100 Plus
chr3R 27901430 chr3R 23389565..23389704 783..644 205 76.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18176805..18177243 1387..1824 2145 99.8 Plus
3R 32079331 3R 18176307..18176700 994..1387 1940 99.5 Plus
3R 32079331 3R 18175602..18175937 427..762 1680 100 Plus
3R 32079331 3R 18176002..18176234 761..993 1165 100 Plus
3R 32079331 3R 18171474..18171703 1..230 1135 99.6 Plus
3R 32079331 3R 18175333..18175529 231..427 985 100 Plus
3R 32079331 3R 27566644..27566783 783..644 205 76.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17917636..17918074 1387..1824 2155 99.7 Plus
3R 31820162 3R 17917138..17917531 994..1387 1940 99.4 Plus
3R 31820162 3R 17916433..17916768 427..762 1680 100 Plus
3R 31820162 3R 17916833..17917065 761..993 1165 100 Plus
3R 31820162 3R 17912305..17912534 1..230 1135 99.5 Plus
3R 31820162 3R 17916164..17916360 231..427 985 100 Plus
3R 31820162 3R 27307475..27307614 783..644 205 76.4 Minus
3R 31820162 3R 27307225..27307367 969..827 145 73.4 Minus
Blast to na_te.dros performed on 2019-03-15 15:04:36 has no hits.

AT28535.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:05:17 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13995840..13996069 1..230 99 -> Plus
chr3R 13999697..13999893 231..427 100 -> Plus
chr3R 13999967..14000301 428..762 100 -> Plus
chr3R 14000368..14000598 763..993 99 -> Plus
chr3R 14000671..14001063 994..1386 99 -> Plus
chr3R 14001167..14001564 1387..1784 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:40 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1665 11..1675 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:54:12 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1665 11..1675 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:01:36 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1665 11..1675 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:08 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1665 11..1675 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-03 12:59:02 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1823 1..1822 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:54:12 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1823 1..1822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:01:36 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1823 1..1822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:08 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
PP2A-B'-RC 1..1823 1..1822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:17 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18176004..18176234 763..993 100 -> Plus
3R 18171474..18171703 1..230 99 -> Plus
3R 18175333..18175529 231..427 100 -> Plus
3R 18175603..18175937 428..762 100 -> Plus
3R 18176307..18176699 994..1386 99 -> Plus
3R 18176805..18177241 1387..1822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:17 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18176004..18176234 763..993 100 -> Plus
3R 18171474..18171703 1..230 99 -> Plus
3R 18175333..18175529 231..427 100 -> Plus
3R 18175603..18175937 428..762 100 -> Plus
3R 18176307..18176699 994..1386 99 -> Plus
3R 18176805..18177241 1387..1822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:17 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18176004..18176234 763..993 100 -> Plus
3R 18171474..18171703 1..230 99 -> Plus
3R 18175333..18175529 231..427 100 -> Plus
3R 18175603..18175937 428..762 100 -> Plus
3R 18176307..18176699 994..1386 99 -> Plus
3R 18176805..18177241 1387..1822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:01:36 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13997196..13997425 1..230 99 -> Plus
arm_3R 14001055..14001251 231..427 100 -> Plus
arm_3R 14001325..14001659 428..762 100 -> Plus
arm_3R 14001726..14001956 763..993 100 -> Plus
arm_3R 14002029..14002421 994..1386 99 -> Plus
arm_3R 14002527..14002963 1387..1822 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:44:50 Download gff for AT28535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17916835..17917065 763..993 100 -> Plus
3R 17912305..17912534 1..230 99 -> Plus
3R 17916164..17916360 231..427 100 -> Plus
3R 17916434..17916768 428..762 100 -> Plus
3R 17917138..17917530 994..1386 99 -> Plus
3R 17917636..17918072 1387..1822 99   Plus

AT28535.hyp Sequence

Translation from 1 to 1674

> AT28535.hyp
TVDMGKDNQISVIYAPLQANKLKDNTPPYDAPPPTPISKVLNITGTPIVR
KEKRQTSARYNASKNCELTALIPLNEKTAASEREELFIQKIQQCCTLFDF
SEPLSDLKFKEVKRAALHEMVDFLTNQNGVITEVIYPEAINMFAVNLFRT
LPPSSNPNGAEFDPEEDEPTLESSWPHLQLVYELFLRFLESPDFQPSMAK
RFIDHQFVLQLLDLFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN
VFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKQFLLKVLLPLHK
AKSLSVYHPQLTYCVVQFLEKDPSLSEAVIKSLLKFWPKTHSPKEVMFLN
ELEELLDVIEPAEFQKVMVPLFRQIAKCVSSPHFQVAERALYYWNNEYIM
SLITDNSAVILPIMFPALNRNSKTHWNKTIHGLIYNALKLFMEIDQRLFD
ECSKNYKQEKQMEREKLSQREELWQQVESLAKTNPEWTKARRFNDCLPVS
DSRALCDQYSENSDSAYDQSEQRARQPPPPLPPQKQAHQEPREVRQALAT
LTTLNNY*

AT28535.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
PP2A-B'-PC 554 CG7913-PC 1..554 4..557 2900 100 Plus
PP2A-B'-PP 683 CG7913-PP 140..683 14..557 2829 99.3 Plus
PP2A-B'-PN 670 CG7913-PN 132..670 19..557 2824 100 Plus
PP2A-B'-PM 670 CG7913-PM 132..670 19..557 2824 100 Plus
PP2A-B'-PL 670 CG7913-PL 132..670 19..557 2824 100 Plus

AT28535.pep Sequence

Translation from 1 to 1674

> AT28535.pep
TVDMGKDNQISVIYAPLQANKLKDNTPPYDAPPPTPISKVLNITGTPIVR
KEKRQTSARYNASKNCELTALIPLNEKTAASEREELFIQKIQQCCTLFDF
SEPLSDLKFKEVKRAALHEMVDFLTNQNGVITEVIYPEAINMFAVNLFRT
LPPSSNPNGAEFDPEEDEPTLESSWPHLQLVYELFLRFLESPDFQPSMAK
RFIDHQFVLQLLDLFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINN
VFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKQFLLKVLLPLHK
AKSLSVYHPQLTYCVVQFLEKDPSLSEAVIKSLLKFWPKTHSPKEVMFLN
ELEELLDVIEPAEFQKVMVPLFRQIAKCVSSPHFQVAERALYYWNNEYIM
SLITDNSAVILPIMFPALNRNSKTHWNKTIHGLIYNALKLFMEIDQRLFD
ECSKNYKQEKQMEREKLSQREELWQQVESLAKTNPEWTKARRFNDCLPVS
DSRALCDQYSENSDSAYDQSEQRARQPPPPLPPQKQAHQEPREVRQALAT
LTTLNNY*

AT28535.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16761-PA 968 GF16761-PA 419..923 43..545 2266 88.6 Plus
Dana\GF18705-PA 859 GF18705-PA 367..785 59..480 1601 69.2 Plus
Dana\GF16760-PA 175 GF16760-PA 113..172 18..76 178 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22681-PA 701 GG22681-PA 130..656 19..545 2787 97.5 Plus
Dere\GG12108-PA 524 GG12108-PA 30..448 59..480 1585 69.2 Plus
Dere\GG19075-PA 310 GG19075-PA 30..304 179..456 567 42.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15123-PA 990 GH15123-PA 445..923 43..525 2230 86.1 Plus
Dgri\GH21692-PA 538 GH21692-PA 30..448 59..480 1582 68.7 Plus
Dgri\GH15112-PA 165 GH15112-PA 104..163 18..76 220 73.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
wrd-PC 554 CG7913-PC 1..554 4..557 2900 100 Plus
wrd-PP 683 CG7913-PP 140..683 14..557 2829 99.3 Plus
wrd-PN 670 CG7913-PN 132..670 19..557 2824 100 Plus
wrd-PM 670 CG7913-PM 132..670 19..557 2824 100 Plus
wrd-PL 670 CG7913-PL 132..670 19..557 2824 100 Plus
wrd-PD 670 CG7913-PD 132..670 19..557 2824 100 Plus
wrd-PE 670 CG7913-PE 132..670 19..557 2824 100 Plus
wrd-PQ 716 CG7913-PQ 140..671 14..545 2769 99.1 Plus
wrd-PJ 703 CG7913-PJ 132..658 19..545 2764 99.8 Plus
wrd-PO 656 CG7913-PO 132..656 19..543 2756 100 Plus
wrd-PK 656 CG7913-PK 132..656 19..543 2756 100 Plus
wrd-PA 951 CG7913-PA 433..951 34..557 2523 93.5 Plus
wrd-PB 984 CG7913-PB 433..939 34..545 2463 93.2 Plus
wrd-PI 438 CG7913-PI 1..438 120..557 2301 100 Plus
wdb-PF 524 CG5643-PF 23..448 52..480 1577 68.8 Plus
wdb-PE 524 CG5643-PE 23..448 52..480 1577 68.8 Plus
wdb-PC 524 CG5643-PC 23..448 52..480 1577 68.8 Plus
wdb-PA 524 CG5643-PA 23..448 52..480 1577 68.8 Plus
wdb-PD 524 CG5643-PD 23..448 52..480 1577 68.8 Plus
wdb-PB 524 CG5643-PB 23..448 52..480 1577 68.8 Plus
CG32568-PC 325 CG32568-PC 31..276 181..426 482 38.6 Plus
CG32568-PB 325 CG32568-PB 31..276 181..426 482 38.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23720-PA 972 GI23720-PA 416..926 35..545 2234 82.9 Plus
Dmoj\GI10753-PA 707 GI10753-PA 215..633 59..480 1588 68.7 Plus
Dmoj\GI15981-PA 471 GI15981-PA 25..445 61..481 908 43.4 Plus
Dmoj\GI23719-PA 157 GI23719-PA 86..154 11..76 217 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12593-PA 761 GL12593-PA 137..715 18..545 2343 81.4 Plus
Dper\GL23581-PA 534 GL23581-PA 31..449 59..480 1584 69.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30019-PA 680 GA30019-PA 135..680 18..557 2474 89 Plus
Dpse\GA30019-PC 714 GA30019-PC 135..668 18..545 2407 88.6 Plus
Dpse\GA30019-PB 959 GA30019-PB 444..959 43..557 2280 86.6 Plus
Dpse\GA26642-PA 536 GA26642-PA 31..449 59..480 1584 69.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16338-PA 512 GM16338-PA 30..436 59..480 1501 66.6 Plus
Dsec\GM20543-PA 326 GM20543-PA 22..300 171..449 464 36.6 Plus
Dsec\GM15281-PA 298 GM15281-PA 129..190 19..80 240 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18073-PA 676 GD18073-PA 227..600 59..480 1315 59.7 Plus
Dsim\GD17304-PA 323 GD17304-PA 22..297 171..449 426 35.1 Plus
Dsim\GD19205-PA 188 GD19205-PA 129..187 19..77 323 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23278-PA 506 GJ23278-PA 1..506 49..557 2435 89.8 Plus
Dvir\GJ10695-PA 537 GJ10695-PA 30..448 59..480 1580 69 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11246-PA 984 GK11246-PA 450..938 70..545 2202 87.6 Plus
Dwil\GK11331-PA 526 GK11331-PA 30..448 59..480 1593 69.2 Plus
Dwil\GK11245-PA 202 GK11245-PA 137..195 23..76 216 72.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25516-PA 832 GE25516-PA 131..573 20..462 2335 97.3 Plus
Dyak\GE10557-PA 524 GE10557-PA 30..448 59..480 1585 69.2 Plus
Dyak\GE25516-PA 832 GE25516-PA 507..787 277..545 1076 77.6 Plus
Dyak\GE17620-PA 260 GE17620-PA 1..239 211..449 490 41 Plus