Clone AT28654 Report

Search the DGRC for AT28654

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:286
Well:54
Vector:pOTB7
Associated Gene/Transcriptste24c-RA
Protein status:AT28654.pep: gold
Preliminary Size:1281
Sequenced Size:2253

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9002 2002-01-01 Sim4 clustering to Release 2
CG33142 2002-06-07 Blastp of sequenced clone
CG9002 2008-04-29 Release 5.5 accounting
CG30461 2008-08-15 Release 5.9 accounting
CG9002 2008-08-15 Release 5.9 accounting
CG9002 2008-12-18 5.12 accounting
CG30461 2008-12-18 5.12 accounting
CG30461 2011-03-01 Transcript Validation

Clone Sequence Records

AT28654.complete Sequence

2253 bp (2253 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119452

> AT28654.complete
GTTGGGGGAACATGATAAGTTTTGATGGCATTCTACGATACTTGGCCGAA
AGTAGATCCAATCATAGTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTG
ACCGGATATGGGAGATGATACTCACCAAGAGGCAGCAATTGGTGTGCCTG
AATGCGATTATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGCCGGAGAT
TTACCATCGGGCCCGCATCTACGAGCTGCATAAAACGGAGCTACAGATAT
GGAAGTACCTCATCGACTTGATTATTACGCTCTGTGAGCTGATATTGGGC
TTCTATCCATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGAAAATAAC
CTCCCAAGAGATCTGGATAACCTTGATCTTTGTTTTCTACCTGACCATTT
ACATTTGTATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTGCCTGCTG
GAGTTGCGATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTG
CATTGGAGCAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGG
CGGCGGCCATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTTCTTCCTT
TGGTTCTGGCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTT
GCCCTACTGCTGCATTCCGTGCATTGGACGACAGGTGGTTTTACCAGAGG
GCACTGCCCTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTC
CCCATGAAGAGGGTATTTATCATAAAGACCCGGACAATGCAGTATAGTAA
TGCCTACTTTTACGGGAGCTGCTGCCTGAAAAGAATTGTAATTTTTGATA
CCTTGCTATTGAACAAGGGCAAGGAACCCAATGAGATCCATCCCTATGAG
GTGGGCAGAGGTCTGACCAACATCCAGGTGGCGGGCGTGGTGTGTCACGA
GTTGGGTCACTGGAAGCACGGACATTTCTACAAGGCTACGATCATCATGA
AGATTCACTTCTTTATCACCATGGGACTGTTCGGATTGTTCTTTCACTCT
CCCCAGCTATACATGGCAGTGGGTTTCGAGCCTGGCGTTATGCCCATCAT
AGTGGGTTTCATCATTGTTCTGAAATTTGCCCTGACTCCTTATCTCACGT
TGGCCAATGTCTTGATGCTGTGGAATCTGCGTCGCTTTGAGTATGCCGCC
GATAAATTTGCCCATCGCATGGGATACTCCATCCAACTGAGGATGGCGCT
GGTCAAGATTTATGCGGATCATATGAGTTTTCCGGTCTACGACCAATGCT
ATGCTCGATGGCATCACACTCATCCCACGATTCTTCAGAGACTGGCCTAT
CAGCAAAAACTGGATGTGAAGGCCATGAATGCCGGAACCTATTAATCTCA
GTAGTCGCCGACCTATACATTCGTTTGATTTTGTACGTTTTTCGAGATAT
CCTGTAAAATTGACCGTGTTACCATGACTCGAAAACAAATTGCTACGCCC
CGCTGTGAAACTATCTCCAAATTGGTGGTCAGCGTCGGCAGTGGATGCTA
CAACACGATCCTTCTGCGCGAATCCCTCGTGGCTGAACTTTCAAAATGGC
ATGATGGAAGTGGGGCCGATTAGTAAACCGAATCCCCATGATTCTCAAAA
GGAGGCAACCTCGTTTCTGGAGCGACATTTCGGAAGCAAGCGTCTGGACT
CCGAGCAAATGAACGCGGAATTTAAGAACAGGAAGACGATTATCTGGCAC
ACTTGGCTGGTGGAGAAGGTGCGGTTTCCTCCAGCTCAGTGTGCGGTCAT
CAAGGAATGGAAGGATCCCATCACGGAGACTCTGGGCATTTGCTATTGTT
CCTGGCACTTGCAGAGCTGCATGGCCTGGCAGCTTATTCTCAGTAATCGA
ATGACGGATGCCAAGTGCTTCTGTTCGCGAATCAAGAAAACGATGGACAT
TGTCAACTGTCTCGTTGACTCGGAAGTGGAACAGGAGAAAACATTTAAGG
ATTGTTCTTCCCCCTTAGCCGTGTTAACCGAGAAAGTGCTTGATGCCACT
GATATGCTGAAGAAACTGAATGATCTTCTAGAGCTCCAGGAGAAACTCAA
TCGGAAATACAAACGCCTGTGTGTATAGAAAAAAAAATAAGGAAATCAAA
AGACTACTTTTGGAGTGCTGACCCCTTGATGTCTGCATAGATTGTATTGT
ATTTATTTTATTAAAACATTTCTGCTGTAAAAAAAAAAAAAAAAAAAAAA
AAA

AT28654.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
ste24c-RA 2226 ste24c-RA 1..2226 1..2226 10995 99.5 Plus
CG30461-RE 2222 CG30461-RE 1..2222 1..2226 10910 99.4 Plus
CG30461-RD 846 CG30461-RD 160..845 1544..2229 3430 100 Plus
CG30461-RD 846 CG30461-RD 1..137 1408..1544 685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12884221..12885632 1544..133 7060 100 Minus
chr2R 21145070 chr2R 12883585..12883958 1917..1544 1855 99.7 Minus
chr2R 21145070 chr2R 12883220..12883531 2228..1917 1560 100 Minus
chr2R 21145070 chr2R 12885689..12885823 135..1 675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16996992..16998403 1544..133 6925 99.4 Minus
2R 25286936 2R 16996356..16996729 1917..1544 1870 100 Minus
2R 25286936 2R 16995990..16996302 2229..1917 1565 100 Minus
2R 25286936 2R 16998460..16998594 135..1 675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16998191..16999602 1544..133 6925 99.3 Minus
2R 25260384 2R 16997555..16997928 1917..1544 1870 100 Minus
2R 25260384 2R 16997189..16997501 2229..1917 1565 100 Minus
2R 25260384 2R 16999659..16999793 135..1 675 100 Minus
2R 25260384 2R 17000419..17000480 857..796 175 85.4 Minus
Blast to na_te.dros performed on 2019-03-15 17:57:35 has no hits.

AT28654.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:58:42 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12885689..12885823 1..135 100   Minus
chr2R 12883220..12883530 1918..2228 100 <- Minus
chr2R 12883585..12883957 1545..1917 99 <- Minus
chr2R 12884221..12885629 136..1544 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:27:54 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
CG9002-RB 1..1371 25..1395 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:27:21 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
ste24c-RB 1..1371 25..1395 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:03 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
ste24c-RA 1..1371 25..1395 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:17:51 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
CG9002-RB 1..1371 25..1395 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:05 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
ste24c-RA 1..1371 25..1395 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:55:55 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
CG9002-RA 1..2226 1..2226 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:27:21 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
ste24c-RA 1..2226 1..2226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:03 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
ste24c-RA 1..2228 1..2228 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:51 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
CG9002-RA 1..2226 1..2226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:05 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
CG30461-RK 1..2228 1..2228 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:42 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16995991..16996301 1918..2228 100 <- Minus
2R 16996356..16996728 1545..1917 100 <- Minus
2R 16996992..16998400 136..1544 99 <- Minus
2R 16998460..16998594 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:42 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16995991..16996301 1918..2228 100 <- Minus
2R 16996356..16996728 1545..1917 100 <- Minus
2R 16996992..16998400 136..1544 99 <- Minus
2R 16998460..16998594 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:42 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16995991..16996301 1918..2228 100 <- Minus
2R 16996356..16996728 1545..1917 100 <- Minus
2R 16996992..16998400 136..1544 99 <- Minus
2R 16998460..16998594 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:03 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12883496..12883806 1918..2228 100 <- Minus
arm_2R 12883861..12884233 1545..1917 100 <- Minus
arm_2R 12884497..12885905 136..1544 99 <- Minus
arm_2R 12885965..12886099 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:11 Download gff for AT28654.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16997190..16997500 1918..2228 100 <- Minus
2R 16997555..16997927 1545..1917 100 <- Minus
2R 16998191..16999599 136..1544 99 <- Minus
2R 16999659..16999793 1..135 100   Minus

AT28654.hyp Sequence

Translation from 24 to 1394

> AT28654.hyp
MAFYDTWPKVDPIIVLVVLCLIVLVDRIWEMILTKRQQLVCLNAIMVPEE
LRGIIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPFLWSL
SAKTLQKITSQEIWITLIFVFYLTIYICIRFLPVLIYDKCLLELRYGMSG
KFPWYLYCCIGAMSILLSQLVLFPLAAAIVFSVKFIGYYFFLWFWLFWAT
FTLLLVFFLPYCCIPCIGRQVVLPEGTALYMEVKRVCDVVGFPMKRVFII
KTRTMQYSNAYFYGSCCLKRIVIFDTLLLNKGKEPNEIHPYEVGRGLTNI
QVAGVVCHELGHWKHGHFYKATIIMKIHFFITMGLFGLFFHSPQLYMAVG
FEPGVMPIIVGFIIVLKFALTPYLTLANVLMLWNLRRFEYAADKFAHRMG
YSIQLRMALVKIYADHMSFPVYDQCYARWHHTHPTILQRLAYQQKLDVKA
MNAGTY*

AT28654.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
ste24c-PC 456 CG9002-PC 1..456 1..456 2452 100 Plus
ste24c-PD 456 CG9002-PD 1..456 1..456 2452 100 Plus
ste24c-PA 456 CG9002-PA 1..456 1..456 2452 100 Plus
ste24b-PA 447 CG9001-PA 8..440 11..441 840 38.6 Plus
ste24a-PA 451 CG9000-PA 4..438 10..440 763 37.1 Plus

AT28654.pep Sequence

Translation from 24 to 1394

> AT28654.pep
MAFYDTWPKVDPIIVLVVLCLIVLVDRIWEMILTKRQQLVCLNAIMVPEE
LRGIIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPFLWSL
SAKTLQKITSQEIWITLIFVFYLTIYICIRFLPVLIYDKCLLELRYGMSG
KFPWYLYCCIGAMSILLSQLVLFPLAAAIVFSVKFIGYYFFLWFWLFWAT
FTLLLVFFLPYCCIPCIGRQVVLPEGTALYMEVKRVCDVVGFPMKRVFII
KTRTMQYSNAYFYGSCCLKRIVIFDTLLLNKGKEPNEIHPYEVGRGLTNI
QVAGVVCHELGHWKHGHFYKATIIMKIHFFITMGLFGLFFHSPQLYMAVG
FEPGVMPIIVGFIIVLKFALTPYLTLANVLMLWNLRRFEYAADKFAHRMG
YSIQLRMALVKIYADHMSFPVYDQCYARWHHTHPTILQRLAYQQKLDVKA
MNAGTY*

AT28654.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13436-PA 455 GF13436-PA 1..453 1..452 1928 82.8 Plus
Dana\GF13435-PA 450 GF13435-PA 8..450 11..455 780 39.3 Plus
Dana\GF13434-PA 451 GF13434-PA 3..451 9..452 772 37.5 Plus
Dana\GF25256-PA 480 GF25256-PA 28..470 5..449 546 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22230-PA 455 GG22230-PA 1..453 1..453 2186 95.4 Plus
Dere\GG22229-PA 447 GG22229-PA 8..440 11..441 791 40.5 Plus
Dere\GG22228-PA 451 GG22228-PA 2..451 8..452 761 37.4 Plus
Dere\GG15495-PA 477 GG15495-PA 36..472 11..450 538 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22830-PA 454 GH22830-PA 1..451 1..451 1748 72.5 Plus
Dgri\GH22829-PA 451 GH22829-PA 7..447 11..447 797 41.8 Plus
Dgri\GH22828-PA 455 GH22828-PA 4..450 10..452 760 36.1 Plus
Dgri\GH14290-PA 478 GH14290-PA 34..478 10..454 603 31.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
ste24c-PC 456 CG9002-PC 1..456 1..456 2452 100 Plus
ste24c-PD 456 CG9002-PD 1..456 1..456 2452 100 Plus
ste24c-PA 456 CG9002-PA 1..456 1..456 2452 100 Plus
ste24b-PA 447 CG9001-PA 8..440 11..441 840 38.6 Plus
ste24a-PA 451 CG9000-PA 4..438 10..440 763 37.1 Plus
CG7573-PB 477 CG7573-PB 36..470 11..448 595 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21209-PA 454 GI21209-PA 1..450 1..450 1750 71.3 Plus
Dmoj\GI21208-PA 450 GI21208-PA 8..446 11..447 867 43.3 Plus
Dmoj\GI21207-PA 452 GI21207-PA 9..444 15..446 769 36.5 Plus
Dmoj\GI23185-PA 485 GI23185-PA 29..471 5..446 531 31.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10493-PA 470 GL10493-PA 1..452 1..452 1738 68.8 Plus
Dper\GL10491-PA 451 GL10491-PA 3..451 9..452 741 36.4 Plus
Dper\GL10492-PA 442 GL10492-PA 6..393 7..394 629 37.4 Plus
Dper\GL22777-PA 260 GL22777-PA 138..250 332..448 218 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17316-PA 470 GA17316-PA 1..452 1..452 1744 69 Plus
Dpse\GA21467-PA 451 GA21467-PA 6..448 7..449 811 39.7 Plus
Dpse\GA21466-PA 451 GA21466-PA 3..451 9..452 744 36.4 Plus
Dpse\GA20448-PA 481 GA20448-PA 28..471 5..448 700 35 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20017-PA 494 GM20017-PA 1..318 1..318 1554 93.4 Plus
Dsec\GM20016-PA 447 GM20016-PA 8..445 11..446 759 38.9 Plus
Dsec\GM20015-PA 451 GM20015-PA 3..438 9..440 758 37 Plus
Dsec\GM25266-PA 477 GM25266-PA 36..470 11..448 527 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15221-PA 226 GD15221-PA 1..226 231..456 1208 98.7 Plus
Dsim\GD25504-PA 451 GD25504-PA 3..438 9..440 758 37 Plus
Dsim\GD14300-PA 477 GD14300-PA 36..470 11..448 527 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20810-PA 454 GJ20810-PA 1..450 1..450 1800 72.9 Plus
Dvir\GJ20809-PA 453 GJ20809-PA 8..419 11..420 745 41.7 Plus
Dvir\GJ20808-PA 452 GJ20808-PA 9..444 15..446 736 36.1 Plus
Dvir\GJ14500-PA 474 GJ14500-PA 35..465 11..440 553 32.3 Plus
Dvir\GJ15402-PA 101 GJ15402-PA 13..100 258..343 178 46.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19571-PA 449 GK19571-PA 1..449 1..450 1806 74.4 Plus
Dwil\GK19570-PA 452 GK19570-PA 8..446 11..447 862 42.5 Plus
Dwil\GK24789-PA 482 GK24789-PA 34..474 10..450 731 34.5 Plus
Dwil\GK19569-PA 451 GK19569-PA 9..444 15..446 727 37.3 Plus
Dwil\GK18949-PA 374 GK18949-PA 9..366 82..442 608 35.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14227-PA 453 GE14227-PA 1..453 1..453 2191 92.5 Plus
Dyak\GE14226-PA 447 GE14226-PA 8..445 11..446 818 39.1 Plus
Dyak\GE14225-PA 407 GE14225-PA 2..403 8..405 639 35.9 Plus
Dyak\GE21805-PA 484 GE21805-PA 36..470 11..447 507 28.9 Plus