BDGP Sequence Production Resources |
Search the DGRC for AT28654
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 286 |
Well: | 54 |
Vector: | pOTB7 |
Associated Gene/Transcript | ste24c-RA |
Protein status: | AT28654.pep: gold |
Preliminary Size: | 1281 |
Sequenced Size: | 2253 |
Gene | Date | Evidence |
---|---|---|
CG9002 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33142 | 2002-06-07 | Blastp of sequenced clone |
CG9002 | 2008-04-29 | Release 5.5 accounting |
CG30461 | 2008-08-15 | Release 5.9 accounting |
CG9002 | 2008-08-15 | Release 5.9 accounting |
CG9002 | 2008-12-18 | 5.12 accounting |
CG30461 | 2008-12-18 | 5.12 accounting |
CG30461 | 2011-03-01 | Transcript Validation |
2253 bp (2253 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119452
> AT28654.complete GTTGGGGGAACATGATAAGTTTTGATGGCATTCTACGATACTTGGCCGAA AGTAGATCCAATCATAGTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTG ACCGGATATGGGAGATGATACTCACCAAGAGGCAGCAATTGGTGTGCCTG AATGCGATTATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGCCGGAGAT TTACCATCGGGCCCGCATCTACGAGCTGCATAAAACGGAGCTACAGATAT GGAAGTACCTCATCGACTTGATTATTACGCTCTGTGAGCTGATATTGGGC TTCTATCCATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGAAAATAAC CTCCCAAGAGATCTGGATAACCTTGATCTTTGTTTTCTACCTGACCATTT ACATTTGTATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTGCCTGCTG GAGTTGCGATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTG CATTGGAGCAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGG CGGCGGCCATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTTCTTCCTT TGGTTCTGGCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTT GCCCTACTGCTGCATTCCGTGCATTGGACGACAGGTGGTTTTACCAGAGG GCACTGCCCTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTC CCCATGAAGAGGGTATTTATCATAAAGACCCGGACAATGCAGTATAGTAA TGCCTACTTTTACGGGAGCTGCTGCCTGAAAAGAATTGTAATTTTTGATA CCTTGCTATTGAACAAGGGCAAGGAACCCAATGAGATCCATCCCTATGAG GTGGGCAGAGGTCTGACCAACATCCAGGTGGCGGGCGTGGTGTGTCACGA GTTGGGTCACTGGAAGCACGGACATTTCTACAAGGCTACGATCATCATGA AGATTCACTTCTTTATCACCATGGGACTGTTCGGATTGTTCTTTCACTCT CCCCAGCTATACATGGCAGTGGGTTTCGAGCCTGGCGTTATGCCCATCAT AGTGGGTTTCATCATTGTTCTGAAATTTGCCCTGACTCCTTATCTCACGT TGGCCAATGTCTTGATGCTGTGGAATCTGCGTCGCTTTGAGTATGCCGCC GATAAATTTGCCCATCGCATGGGATACTCCATCCAACTGAGGATGGCGCT GGTCAAGATTTATGCGGATCATATGAGTTTTCCGGTCTACGACCAATGCT ATGCTCGATGGCATCACACTCATCCCACGATTCTTCAGAGACTGGCCTAT CAGCAAAAACTGGATGTGAAGGCCATGAATGCCGGAACCTATTAATCTCA GTAGTCGCCGACCTATACATTCGTTTGATTTTGTACGTTTTTCGAGATAT CCTGTAAAATTGACCGTGTTACCATGACTCGAAAACAAATTGCTACGCCC CGCTGTGAAACTATCTCCAAATTGGTGGTCAGCGTCGGCAGTGGATGCTA CAACACGATCCTTCTGCGCGAATCCCTCGTGGCTGAACTTTCAAAATGGC ATGATGGAAGTGGGGCCGATTAGTAAACCGAATCCCCATGATTCTCAAAA GGAGGCAACCTCGTTTCTGGAGCGACATTTCGGAAGCAAGCGTCTGGACT CCGAGCAAATGAACGCGGAATTTAAGAACAGGAAGACGATTATCTGGCAC ACTTGGCTGGTGGAGAAGGTGCGGTTTCCTCCAGCTCAGTGTGCGGTCAT CAAGGAATGGAAGGATCCCATCACGGAGACTCTGGGCATTTGCTATTGTT CCTGGCACTTGCAGAGCTGCATGGCCTGGCAGCTTATTCTCAGTAATCGA ATGACGGATGCCAAGTGCTTCTGTTCGCGAATCAAGAAAACGATGGACAT TGTCAACTGTCTCGTTGACTCGGAAGTGGAACAGGAGAAAACATTTAAGG ATTGTTCTTCCCCCTTAGCCGTGTTAACCGAGAAAGTGCTTGATGCCACT GATATGCTGAAGAAACTGAATGATCTTCTAGAGCTCCAGGAGAAACTCAA TCGGAAATACAAACGCCTGTGTGTATAGAAAAAAAAATAAGGAAATCAAA AGACTACTTTTGGAGTGCTGACCCCTTGATGTCTGCATAGATTGTATTGT ATTTATTTTATTAAAACATTTCTGCTGTAAAAAAAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ste24c-RA | 2226 | ste24c-RA | 1..2226 | 1..2226 | 10995 | 99.5 | Plus |
CG30461-RE | 2222 | CG30461-RE | 1..2222 | 1..2226 | 10910 | 99.4 | Plus |
CG30461-RD | 846 | CG30461-RD | 160..845 | 1544..2229 | 3430 | 100 | Plus |
CG30461-RD | 846 | CG30461-RD | 1..137 | 1408..1544 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12884221..12885632 | 1544..133 | 7060 | 100 | Minus |
chr2R | 21145070 | chr2R | 12883585..12883958 | 1917..1544 | 1855 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 12883220..12883531 | 2228..1917 | 1560 | 100 | Minus |
chr2R | 21145070 | chr2R | 12885689..12885823 | 135..1 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16996992..16998403 | 1544..133 | 6925 | 99.4 | Minus |
2R | 25286936 | 2R | 16996356..16996729 | 1917..1544 | 1870 | 100 | Minus |
2R | 25286936 | 2R | 16995990..16996302 | 2229..1917 | 1565 | 100 | Minus |
2R | 25286936 | 2R | 16998460..16998594 | 135..1 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 16998191..16999602 | 1544..133 | 6925 | 99.3 | Minus |
2R | 25260384 | 2R | 16997555..16997928 | 1917..1544 | 1870 | 100 | Minus |
2R | 25260384 | 2R | 16997189..16997501 | 2229..1917 | 1565 | 100 | Minus |
2R | 25260384 | 2R | 16999659..16999793 | 135..1 | 675 | 100 | Minus |
2R | 25260384 | 2R | 17000419..17000480 | 857..796 | 175 | 85.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12885689..12885823 | 1..135 | 100 | Minus | |
chr2R | 12883220..12883530 | 1918..2228 | 100 | <- | Minus |
chr2R | 12883585..12883957 | 1545..1917 | 99 | <- | Minus |
chr2R | 12884221..12885629 | 136..1544 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9002-RB | 1..1371 | 25..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ste24c-RB | 1..1371 | 25..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ste24c-RA | 1..1371 | 25..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9002-RB | 1..1371 | 25..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ste24c-RA | 1..1371 | 25..1395 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9002-RA | 1..2226 | 1..2226 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ste24c-RA | 1..2226 | 1..2226 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ste24c-RA | 1..2228 | 1..2228 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9002-RA | 1..2226 | 1..2226 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30461-RK | 1..2228 | 1..2228 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16995991..16996301 | 1918..2228 | 100 | <- | Minus |
2R | 16996356..16996728 | 1545..1917 | 100 | <- | Minus |
2R | 16996992..16998400 | 136..1544 | 99 | <- | Minus |
2R | 16998460..16998594 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16995991..16996301 | 1918..2228 | 100 | <- | Minus |
2R | 16996356..16996728 | 1545..1917 | 100 | <- | Minus |
2R | 16996992..16998400 | 136..1544 | 99 | <- | Minus |
2R | 16998460..16998594 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16995991..16996301 | 1918..2228 | 100 | <- | Minus |
2R | 16996356..16996728 | 1545..1917 | 100 | <- | Minus |
2R | 16996992..16998400 | 136..1544 | 99 | <- | Minus |
2R | 16998460..16998594 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12883496..12883806 | 1918..2228 | 100 | <- | Minus |
arm_2R | 12883861..12884233 | 1545..1917 | 100 | <- | Minus |
arm_2R | 12884497..12885905 | 136..1544 | 99 | <- | Minus |
arm_2R | 12885965..12886099 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16997190..16997500 | 1918..2228 | 100 | <- | Minus |
2R | 16997555..16997927 | 1545..1917 | 100 | <- | Minus |
2R | 16998191..16999599 | 136..1544 | 99 | <- | Minus |
2R | 16999659..16999793 | 1..135 | 100 | Minus |
Translation from 24 to 1394
> AT28654.hyp MAFYDTWPKVDPIIVLVVLCLIVLVDRIWEMILTKRQQLVCLNAIMVPEE LRGIIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPFLWSL SAKTLQKITSQEIWITLIFVFYLTIYICIRFLPVLIYDKCLLELRYGMSG KFPWYLYCCIGAMSILLSQLVLFPLAAAIVFSVKFIGYYFFLWFWLFWAT FTLLLVFFLPYCCIPCIGRQVVLPEGTALYMEVKRVCDVVGFPMKRVFII KTRTMQYSNAYFYGSCCLKRIVIFDTLLLNKGKEPNEIHPYEVGRGLTNI QVAGVVCHELGHWKHGHFYKATIIMKIHFFITMGLFGLFFHSPQLYMAVG FEPGVMPIIVGFIIVLKFALTPYLTLANVLMLWNLRRFEYAADKFAHRMG YSIQLRMALVKIYADHMSFPVYDQCYARWHHTHPTILQRLAYQQKLDVKA MNAGTY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ste24c-PC | 456 | CG9002-PC | 1..456 | 1..456 | 2452 | 100 | Plus |
ste24c-PD | 456 | CG9002-PD | 1..456 | 1..456 | 2452 | 100 | Plus |
ste24c-PA | 456 | CG9002-PA | 1..456 | 1..456 | 2452 | 100 | Plus |
ste24b-PA | 447 | CG9001-PA | 8..440 | 11..441 | 840 | 38.6 | Plus |
ste24a-PA | 451 | CG9000-PA | 4..438 | 10..440 | 763 | 37.1 | Plus |
Translation from 24 to 1394
> AT28654.pep MAFYDTWPKVDPIIVLVVLCLIVLVDRIWEMILTKRQQLVCLNAIMVPEE LRGIIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPFLWSL SAKTLQKITSQEIWITLIFVFYLTIYICIRFLPVLIYDKCLLELRYGMSG KFPWYLYCCIGAMSILLSQLVLFPLAAAIVFSVKFIGYYFFLWFWLFWAT FTLLLVFFLPYCCIPCIGRQVVLPEGTALYMEVKRVCDVVGFPMKRVFII KTRTMQYSNAYFYGSCCLKRIVIFDTLLLNKGKEPNEIHPYEVGRGLTNI QVAGVVCHELGHWKHGHFYKATIIMKIHFFITMGLFGLFFHSPQLYMAVG FEPGVMPIIVGFIIVLKFALTPYLTLANVLMLWNLRRFEYAADKFAHRMG YSIQLRMALVKIYADHMSFPVYDQCYARWHHTHPTILQRLAYQQKLDVKA MNAGTY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13436-PA | 455 | GF13436-PA | 1..453 | 1..452 | 1928 | 82.8 | Plus |
Dana\GF13435-PA | 450 | GF13435-PA | 8..450 | 11..455 | 780 | 39.3 | Plus |
Dana\GF13434-PA | 451 | GF13434-PA | 3..451 | 9..452 | 772 | 37.5 | Plus |
Dana\GF25256-PA | 480 | GF25256-PA | 28..470 | 5..449 | 546 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22230-PA | 455 | GG22230-PA | 1..453 | 1..453 | 2186 | 95.4 | Plus |
Dere\GG22229-PA | 447 | GG22229-PA | 8..440 | 11..441 | 791 | 40.5 | Plus |
Dere\GG22228-PA | 451 | GG22228-PA | 2..451 | 8..452 | 761 | 37.4 | Plus |
Dere\GG15495-PA | 477 | GG15495-PA | 36..472 | 11..450 | 538 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22830-PA | 454 | GH22830-PA | 1..451 | 1..451 | 1748 | 72.5 | Plus |
Dgri\GH22829-PA | 451 | GH22829-PA | 7..447 | 11..447 | 797 | 41.8 | Plus |
Dgri\GH22828-PA | 455 | GH22828-PA | 4..450 | 10..452 | 760 | 36.1 | Plus |
Dgri\GH14290-PA | 478 | GH14290-PA | 34..478 | 10..454 | 603 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ste24c-PC | 456 | CG9002-PC | 1..456 | 1..456 | 2452 | 100 | Plus |
ste24c-PD | 456 | CG9002-PD | 1..456 | 1..456 | 2452 | 100 | Plus |
ste24c-PA | 456 | CG9002-PA | 1..456 | 1..456 | 2452 | 100 | Plus |
ste24b-PA | 447 | CG9001-PA | 8..440 | 11..441 | 840 | 38.6 | Plus |
ste24a-PA | 451 | CG9000-PA | 4..438 | 10..440 | 763 | 37.1 | Plus |
CG7573-PB | 477 | CG7573-PB | 36..470 | 11..448 | 595 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21209-PA | 454 | GI21209-PA | 1..450 | 1..450 | 1750 | 71.3 | Plus |
Dmoj\GI21208-PA | 450 | GI21208-PA | 8..446 | 11..447 | 867 | 43.3 | Plus |
Dmoj\GI21207-PA | 452 | GI21207-PA | 9..444 | 15..446 | 769 | 36.5 | Plus |
Dmoj\GI23185-PA | 485 | GI23185-PA | 29..471 | 5..446 | 531 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10493-PA | 470 | GL10493-PA | 1..452 | 1..452 | 1738 | 68.8 | Plus |
Dper\GL10491-PA | 451 | GL10491-PA | 3..451 | 9..452 | 741 | 36.4 | Plus |
Dper\GL10492-PA | 442 | GL10492-PA | 6..393 | 7..394 | 629 | 37.4 | Plus |
Dper\GL22777-PA | 260 | GL22777-PA | 138..250 | 332..448 | 218 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17316-PA | 470 | GA17316-PA | 1..452 | 1..452 | 1744 | 69 | Plus |
Dpse\GA21467-PA | 451 | GA21467-PA | 6..448 | 7..449 | 811 | 39.7 | Plus |
Dpse\GA21466-PA | 451 | GA21466-PA | 3..451 | 9..452 | 744 | 36.4 | Plus |
Dpse\GA20448-PA | 481 | GA20448-PA | 28..471 | 5..448 | 700 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20017-PA | 494 | GM20017-PA | 1..318 | 1..318 | 1554 | 93.4 | Plus |
Dsec\GM20016-PA | 447 | GM20016-PA | 8..445 | 11..446 | 759 | 38.9 | Plus |
Dsec\GM20015-PA | 451 | GM20015-PA | 3..438 | 9..440 | 758 | 37 | Plus |
Dsec\GM25266-PA | 477 | GM25266-PA | 36..470 | 11..448 | 527 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15221-PA | 226 | GD15221-PA | 1..226 | 231..456 | 1208 | 98.7 | Plus |
Dsim\GD25504-PA | 451 | GD25504-PA | 3..438 | 9..440 | 758 | 37 | Plus |
Dsim\GD14300-PA | 477 | GD14300-PA | 36..470 | 11..448 | 527 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20810-PA | 454 | GJ20810-PA | 1..450 | 1..450 | 1800 | 72.9 | Plus |
Dvir\GJ20809-PA | 453 | GJ20809-PA | 8..419 | 11..420 | 745 | 41.7 | Plus |
Dvir\GJ20808-PA | 452 | GJ20808-PA | 9..444 | 15..446 | 736 | 36.1 | Plus |
Dvir\GJ14500-PA | 474 | GJ14500-PA | 35..465 | 11..440 | 553 | 32.3 | Plus |
Dvir\GJ15402-PA | 101 | GJ15402-PA | 13..100 | 258..343 | 178 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19571-PA | 449 | GK19571-PA | 1..449 | 1..450 | 1806 | 74.4 | Plus |
Dwil\GK19570-PA | 452 | GK19570-PA | 8..446 | 11..447 | 862 | 42.5 | Plus |
Dwil\GK24789-PA | 482 | GK24789-PA | 34..474 | 10..450 | 731 | 34.5 | Plus |
Dwil\GK19569-PA | 451 | GK19569-PA | 9..444 | 15..446 | 727 | 37.3 | Plus |
Dwil\GK18949-PA | 374 | GK18949-PA | 9..366 | 82..442 | 608 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14227-PA | 453 | GE14227-PA | 1..453 | 1..453 | 2191 | 92.5 | Plus |
Dyak\GE14226-PA | 447 | GE14226-PA | 8..445 | 11..446 | 818 | 39.1 | Plus |
Dyak\GE14225-PA | 407 | GE14225-PA | 2..403 | 8..405 | 639 | 35.9 | Plus |
Dyak\GE21805-PA | 484 | GE21805-PA | 36..470 | 11..447 | 507 | 28.9 | Plus |