BDGP Sequence Production Resources |
Search the DGRC for AT28824
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 288 |
Well: | 24 |
Vector: | pOTB7 |
Associated Gene/Transcript | Pmm45A-RA |
Protein status: | AT28824.pep: gold |
Preliminary Size: | 2446 |
Sequenced Size: | 2186 |
Gene | Date | Evidence |
---|---|---|
CG8073 | 2002-12-10 | Blastp of sequenced clone |
CG8073 | 2003-01-01 | Sim4 clustering to Release 3 |
Pmm45A | 2008-04-29 | Release 5.5 accounting |
Pmm45A | 2008-08-15 | Release 5.9 accounting |
Pmm45A | 2008-12-18 | 5.12 accounting |
2186 bp (2186 high quality bases) assembled on 2002-12-10
GenBank Submission: BT003628
> AT28824.complete TTCATCTAAATTCAACATAAAATTAAATAGATCTTTTGGCCAAAAAACCT CAGCCACCATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGATCAAGAAC ATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGCAAGTGGAT TCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGACGCAGTTC GGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCCGCATCAGC TTCGGCACGGCCGGATTGAGGGCTTGCATGCGGGCTGGCTTTGACTCCAT GAACGAGCTGGTGGTGATTCAGACGGCGCAGGGCTTATGTGAGTACATCA AGGAACAGTACCCTGATCCGGCGGACTGGTCCGGACGTGGCATTGTCTTC GGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTCTCGGCCAT TGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAGCGCTACGTGG CCACGCCCATGGTGCCCTTTGCCATCTTGAGGCTACAGTGCTTGGCCGGC GTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGCTACAAGGT GTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGAGGGCATAC AGGAGTCGATTCTAAACAATTTGGAGCCCAAGGGCTCATCCTGGGACGAT TCGGCGATGTGCTCGAACACAATGCTGGAGGATCCGTACGATATCGTTGT GCCGCCCTATTTCGATATACTGAAGAAACAACTGCCTTGCACTTCGCTGG AGGCCAACGGAAGGTGCTCTCTCTCATTCACCTATACGGCCATGCACGGC GTGGGCTATGCATTTGTGAAGCAGGCTTTCGCCCGAATCAATCTTAAGCC TTTCATATCGGTGTGCGAGCAGCAGGAGCCGGACCCAGAGTTCCCCACCA CTCCGATGCCCAACCCGGAGGAGGGAAAGACCTCGTTGGATTTATCAATT AAAACGGCGAAAGCCAACAGCAGCCAAATAATTTTAGCCAACGATCCGGA TGCCGACCGCCTGGCAGTTGCCGAAGTACGCGAGGATGGTAGCTATAAGC TGTTCAGCGGCAACGAAGTGGGCGCTCTTTTGGGCTGGTGGTCTCTGGAG CTGCACAAAATGCGAGAACCCGACTGCGATGTTAGTAACTGTGTGATGAT AGCCAGTACGGTGAGCTCAAAGATTCTCAGGGCCATGGCCGAGCGGGAAG GCTTCCAGTTCTTCGAAACGCTGACTGGATTCAAGTGGATGGGTAACAAG GCAATCGAGCTACAGCAGGCGGGAAAAACTGTGTTGTTTGCCTTCGAAGA GGCGATCGGCTTCATGGTCGGCACCACCGTACTTGACAAGGATGGTGTCA GCGCGGCTGGCCATTTGGCCACTATGGCGTGCTATCTTCGGTGCAAGCTG TGCATGACACTGCAGGAGAAACTGCGCGACATCTACGAAACATATGGGTT CCACACGACTGTCAGCTCCTATGTCATATGCCGTTGCCCGCCGGTCATCG AGCAGATCTTTGAGCGCTTGCGCACCTGGGACGAGGGCAAGGCAGACACG TATCCGACCAGCATCCTTAACGGCGAGTACGAGATTGAAAACGTTCGCGA TTTAACCACGGGATTCGACAGTAGCACTGGCGACAAGAAGGCCACCTTGC CGACCAGCTCCAGTTCCCAAATGATCACATTTACCTTCAAAAACGGACTC GTGGTCACTCTACGCACCAGCGGCACGGAGCCCAAGATGAAGTACTACGC CGAAATGTGTGGCAAGCCGGACGAGAAAAACTGGGCCAAGCTGACTAATA CAATGAATACCATGGTGGAGGCCATTGTCGAGGAATTCTACGAGCCAAGC AAGAACGGCCTCCAGCGCAGGAAGGAATAATCCGAATGCACCTTTAAGCG GATACGCTAGGCGACTGGGACGAAAGATCTAACACGTAGACCTGTCTAAA ATTGAAAGTTCTATACCAACAGCACTGACGACGCACAAGCCAAAAAAACA ACAGCAGCGCAAGCTGTTGCCTATTATTGTTTAAAGGATATCTGATATGT TAGTATTCCACTCACATTTGGCTAGTATTTATGAAATAATGTAAATAAAA GCGAACGCACCATCCACCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pmm45A-RA | 2530 | Pmm45A-RA | 314..2481 | 1..2169 | 10775 | 99.8 | Plus |
Pmm45A-RB | 2413 | Pmm45A-RB | 314..2067 | 1..1754 | 8740 | 99.8 | Plus |
Pmm45A-RB | 2413 | Pmm45A-RB | 2066..2364 | 1870..2169 | 1460 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 4994739..4996584 | 2168..322 | 9170 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 4996811..4997030 | 220..1 | 1100 | 100 | Minus |
chr2R | 21145070 | chr2R | 4996648..4996750 | 322..220 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9107160..9109006 | 2169..322 | 9160 | 99.8 | Minus |
2R | 25286936 | 2R | 9109233..9109452 | 220..1 | 1100 | 100 | Minus |
2R | 25286936 | 2R | 9109070..9109172 | 322..220 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9108359..9110205 | 2169..322 | 9170 | 99.8 | Minus |
2R | 25260384 | 2R | 9110432..9110651 | 220..1 | 1100 | 100 | Minus |
2R | 25260384 | 2R | 9110269..9110371 | 322..220 | 515 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 4994739..4996584 | 322..2168 | 99 | <- | Minus |
chr2R | 4996649..4996750 | 220..321 | 100 | <- | Minus |
chr2R | 4996812..4997030 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 1..1872 | 59..1930 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 1..1872 | 59..1930 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 1..1872 | 59..1930 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 1..1872 | 59..1930 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 1..1872 | 59..1930 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 272..2438 | 1..2168 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 272..2438 | 1..2168 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 267..2433 | 1..2168 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 272..2438 | 1..2168 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pmm45A-RA | 267..2433 | 1..2168 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9107161..9109006 | 322..2168 | 99 | <- | Minus |
2R | 9109071..9109172 | 220..321 | 100 | <- | Minus |
2R | 9109234..9109452 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9107161..9109006 | 322..2168 | 99 | <- | Minus |
2R | 9109071..9109172 | 220..321 | 100 | <- | Minus |
2R | 9109234..9109452 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9107161..9109006 | 322..2168 | 99 | <- | Minus |
2R | 9109071..9109172 | 220..321 | 100 | <- | Minus |
2R | 9109234..9109452 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 4994666..4996511 | 322..2168 | 99 | <- | Minus |
arm_2R | 4996576..4996677 | 220..321 | 100 | <- | Minus |
arm_2R | 4996739..4996957 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9108360..9110205 | 322..2168 | 99 | <- | Minus |
2R | 9110270..9110371 | 220..321 | 100 | <- | Minus |
2R | 9110433..9110651 | 1..219 | 100 | Minus |
Translation from 1 to 1929
> AT28824.hyp SSKFNIKLNRSFGQKTSATMCQSGGQMLCEIKNMALSGDPELDGEIRKWI RWDKCASTACQIMDAVRAKDWDTLRKRLCTRISFGTAGLRACMRAGFDSM NELVVIQTAQGLCEYIKEQYPDPADWSGRGIVFGYDGRYNSHRFAELSAI VFLNNDFKVWLFKRYVATPMVPFAILRLQCLAGVMVTASHNPKEDNGYKV YWTNGAQIIPPHDEGIQESILNNLEPKGSSWDDSAMCSNTMLEDPYDIVV PPYFDILKKQLPCTSLEANGRCSLSFTYTAMHGVGYAFVKQAFARINLKP FISVCEQQEPDPEFPTTPMPNPEEGKTSLDLSIKTAKANSSQIILANDPD ADRLAVAEVREDGSYKLFSGNEVGALLGWWSLELHKMREPDCDVSNCVMI ASTVSSKILRAMAEREGFQFFETLTGFKWMGNKAIELQQAGKTVLFAFEE AIGFMVGTTVLDKDGVSAAGHLATMACYLRCKLCMTLQEKLRDIYETYGF HTTVSSYVICRCPPVIEQIFERLRTWDEGKADTYPTSILNGEYEIENVRD LTTGFDSSTGDKKATLPTSSSSQMITFTFKNGLVVTLRTSGTEPKMKYYA EMCGKPDEKNWAKLTNTMNTMVEAIVEEFYEPSKNGLQRRKE*
Translation from 58 to 1929
> AT28824.pep MCQSGGQMLCEIKNMALSGDPELDGEIRKWIRWDKCASTACQIMDAVRAK DWDTLRKRLCTRISFGTAGLRACMRAGFDSMNELVVIQTAQGLCEYIKEQ YPDPADWSGRGIVFGYDGRYNSHRFAELSAIVFLNNDFKVWLFKRYVATP MVPFAILRLQCLAGVMVTASHNPKEDNGYKVYWTNGAQIIPPHDEGIQES ILNNLEPKGSSWDDSAMCSNTMLEDPYDIVVPPYFDILKKQLPCTSLEAN GRCSLSFTYTAMHGVGYAFVKQAFARINLKPFISVCEQQEPDPEFPTTPM PNPEEGKTSLDLSIKTAKANSSQIILANDPDADRLAVAEVREDGSYKLFS GNEVGALLGWWSLELHKMREPDCDVSNCVMIASTVSSKILRAMAEREGFQ FFETLTGFKWMGNKAIELQQAGKTVLFAFEEAIGFMVGTTVLDKDGVSAA GHLATMACYLRCKLCMTLQEKLRDIYETYGFHTTVSSYVICRCPPVIEQI FERLRTWDEGKADTYPTSILNGEYEIENVRDLTTGFDSSTGDKKATLPTS SSSQMITFTFKNGLVVTLRTSGTEPKMKYYAEMCGKPDEKNWAKLTNTMN TMVEAIVEEFYEPSKNGLQRRKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12709-PA | 623 | GF12709-PA | 1..623 | 1..623 | 2811 | 81.9 | Plus |
Dana\GF11777-PA | 630 | GF11777-PA | 17..623 | 12..620 | 1764 | 52.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10583-PA | 584 | GG10583-PA | 1..584 | 1..623 | 3052 | 91 | Plus |
Dere\GG22396-PA | 628 | GG22396-PA | 17..621 | 12..618 | 1805 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23045-PA | 623 | GH23045-PA | 1..623 | 1..623 | 2429 | 69.2 | Plus |
Dgri\GH21282-PA | 580 | GH21282-PA | 5..577 | 14..621 | 2104 | 64.7 | Plus |
Dgri\GH23475-PA | 477 | GH23475-PA | 35..477 | 181..623 | 1716 | 69.3 | Plus |
Dgri\GH20478-PA | 618 | GH20478-PA | 14..611 | 12..610 | 1640 | 49.9 | Plus |
Dgri\GH22267-PA | 607 | GH22267-PA | 14..600 | 12..610 | 1633 | 49.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pgm2a-PA | 623 | CG8073-PA | 1..623 | 1..623 | 3316 | 100 | Plus |
Pgm2b-PA | 628 | CG10202-PA | 17..621 | 12..618 | 1723 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21114-PA | 623 | GI21114-PA | 1..622 | 1..623 | 2365 | 66.6 | Plus |
Dmoj\GI19724-PA | 625 | GI19724-PA | 13..622 | 18..621 | 2036 | 63.2 | Plus |
Dmoj\GI21021-PA | 616 | GI21021-PA | 9..615 | 4..613 | 1725 | 52.5 | Plus |
Dmoj\GI21115-PA | 590 | GI21115-PA | 16..576 | 55..622 | 1723 | 56.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16851-PA | 584 | GL16851-PA | 1..584 | 1..623 | 2453 | 71.7 | Plus |
Dper\GL10655-PA | 629 | GL10655-PA | 14..622 | 12..620 | 1916 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20805-PB | 623 | GA20805-PB | 1..623 | 1..623 | 2689 | 77.2 | Plus |
Dpse\GA10151-PA | 629 | GA10151-PA | 14..622 | 12..620 | 1913 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20631-PA | 584 | GM20631-PA | 1..584 | 1..623 | 3081 | 92.3 | Plus |
Dsec\GM20181-PA | 628 | GM20181-PA | 17..621 | 12..618 | 1789 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10104-PA | 584 | GD10104-PA | 1..584 | 1..623 | 3081 | 92.3 | Plus |
Dsim\GD25655-PA | 598 | GD25655-PA | 17..591 | 12..618 | 1690 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20963-PA | 624 | GJ20963-PA | 1..623 | 1..623 | 2469 | 69.7 | Plus |
Dvir\GJ20964-PA | 686 | GJ20964-PA | 81..685 | 18..623 | 2312 | 69.3 | Plus |
Dvir\GJ17598-PA | 583 | GJ17598-PA | 2..580 | 6..621 | 2067 | 63.2 | Plus |
Dvir\GJ21944-PA | 621 | GJ21944-PA | 9..620 | 4..618 | 1771 | 52.8 | Plus |