Clone AT28824 Report

Search the DGRC for AT28824

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:288
Well:24
Vector:pOTB7
Associated Gene/TranscriptPmm45A-RA
Protein status:AT28824.pep: gold
Preliminary Size:2446
Sequenced Size:2186

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8073 2002-12-10 Blastp of sequenced clone
CG8073 2003-01-01 Sim4 clustering to Release 3
Pmm45A 2008-04-29 Release 5.5 accounting
Pmm45A 2008-08-15 Release 5.9 accounting
Pmm45A 2008-12-18 5.12 accounting

Clone Sequence Records

AT28824.complete Sequence

2186 bp (2186 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003628

> AT28824.complete
TTCATCTAAATTCAACATAAAATTAAATAGATCTTTTGGCCAAAAAACCT
CAGCCACCATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGATCAAGAAC
ATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGCAAGTGGAT
TCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGACGCAGTTC
GGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCCGCATCAGC
TTCGGCACGGCCGGATTGAGGGCTTGCATGCGGGCTGGCTTTGACTCCAT
GAACGAGCTGGTGGTGATTCAGACGGCGCAGGGCTTATGTGAGTACATCA
AGGAACAGTACCCTGATCCGGCGGACTGGTCCGGACGTGGCATTGTCTTC
GGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTCTCGGCCAT
TGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAGCGCTACGTGG
CCACGCCCATGGTGCCCTTTGCCATCTTGAGGCTACAGTGCTTGGCCGGC
GTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGCTACAAGGT
GTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGAGGGCATAC
AGGAGTCGATTCTAAACAATTTGGAGCCCAAGGGCTCATCCTGGGACGAT
TCGGCGATGTGCTCGAACACAATGCTGGAGGATCCGTACGATATCGTTGT
GCCGCCCTATTTCGATATACTGAAGAAACAACTGCCTTGCACTTCGCTGG
AGGCCAACGGAAGGTGCTCTCTCTCATTCACCTATACGGCCATGCACGGC
GTGGGCTATGCATTTGTGAAGCAGGCTTTCGCCCGAATCAATCTTAAGCC
TTTCATATCGGTGTGCGAGCAGCAGGAGCCGGACCCAGAGTTCCCCACCA
CTCCGATGCCCAACCCGGAGGAGGGAAAGACCTCGTTGGATTTATCAATT
AAAACGGCGAAAGCCAACAGCAGCCAAATAATTTTAGCCAACGATCCGGA
TGCCGACCGCCTGGCAGTTGCCGAAGTACGCGAGGATGGTAGCTATAAGC
TGTTCAGCGGCAACGAAGTGGGCGCTCTTTTGGGCTGGTGGTCTCTGGAG
CTGCACAAAATGCGAGAACCCGACTGCGATGTTAGTAACTGTGTGATGAT
AGCCAGTACGGTGAGCTCAAAGATTCTCAGGGCCATGGCCGAGCGGGAAG
GCTTCCAGTTCTTCGAAACGCTGACTGGATTCAAGTGGATGGGTAACAAG
GCAATCGAGCTACAGCAGGCGGGAAAAACTGTGTTGTTTGCCTTCGAAGA
GGCGATCGGCTTCATGGTCGGCACCACCGTACTTGACAAGGATGGTGTCA
GCGCGGCTGGCCATTTGGCCACTATGGCGTGCTATCTTCGGTGCAAGCTG
TGCATGACACTGCAGGAGAAACTGCGCGACATCTACGAAACATATGGGTT
CCACACGACTGTCAGCTCCTATGTCATATGCCGTTGCCCGCCGGTCATCG
AGCAGATCTTTGAGCGCTTGCGCACCTGGGACGAGGGCAAGGCAGACACG
TATCCGACCAGCATCCTTAACGGCGAGTACGAGATTGAAAACGTTCGCGA
TTTAACCACGGGATTCGACAGTAGCACTGGCGACAAGAAGGCCACCTTGC
CGACCAGCTCCAGTTCCCAAATGATCACATTTACCTTCAAAAACGGACTC
GTGGTCACTCTACGCACCAGCGGCACGGAGCCCAAGATGAAGTACTACGC
CGAAATGTGTGGCAAGCCGGACGAGAAAAACTGGGCCAAGCTGACTAATA
CAATGAATACCATGGTGGAGGCCATTGTCGAGGAATTCTACGAGCCAAGC
AAGAACGGCCTCCAGCGCAGGAAGGAATAATCCGAATGCACCTTTAAGCG
GATACGCTAGGCGACTGGGACGAAAGATCTAACACGTAGACCTGTCTAAA
ATTGAAAGTTCTATACCAACAGCACTGACGACGCACAAGCCAAAAAAACA
ACAGCAGCGCAAGCTGTTGCCTATTATTGTTTAAAGGATATCTGATATGT
TAGTATTCCACTCACATTTGGCTAGTATTTATGAAATAATGTAAATAAAA
GCGAACGCACCATCCACCAAAAAAAAAAAAAAAAAA

AT28824.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pmm45A-RA 2530 Pmm45A-RA 314..2481 1..2169 10775 99.8 Plus
Pmm45A-RB 2413 Pmm45A-RB 314..2067 1..1754 8740 99.8 Plus
Pmm45A-RB 2413 Pmm45A-RB 2066..2364 1870..2169 1460 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4994739..4996584 2168..322 9170 99.9 Minus
chr2R 21145070 chr2R 4996811..4997030 220..1 1100 100 Minus
chr2R 21145070 chr2R 4996648..4996750 322..220 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9107160..9109006 2169..322 9160 99.8 Minus
2R 25286936 2R 9109233..9109452 220..1 1100 100 Minus
2R 25286936 2R 9109070..9109172 322..220 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9108359..9110205 2169..322 9170 99.8 Minus
2R 25260384 2R 9110432..9110651 220..1 1100 100 Minus
2R 25260384 2R 9110269..9110371 322..220 515 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:51:49 has no hits.

AT28824.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:47 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4994739..4996584 322..2168 99 <- Minus
chr2R 4996649..4996750 220..321 100 <- Minus
chr2R 4996812..4997030 1..219 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:28:20 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 1..1872 59..1930 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:49:45 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 1..1872 59..1930 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:01:28 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 1..1872 59..1930 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:31:49 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 1..1872 59..1930 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:34:04 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 1..1872 59..1930 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:00:19 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 272..2438 1..2168 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:49:45 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 272..2438 1..2168 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:28 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 267..2433 1..2168 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:31:50 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 272..2438 1..2168 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:04 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
Pmm45A-RA 267..2433 1..2168 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:47 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9107161..9109006 322..2168 99 <- Minus
2R 9109071..9109172 220..321 100 <- Minus
2R 9109234..9109452 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:47 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9107161..9109006 322..2168 99 <- Minus
2R 9109071..9109172 220..321 100 <- Minus
2R 9109234..9109452 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:47 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9107161..9109006 322..2168 99 <- Minus
2R 9109071..9109172 220..321 100 <- Minus
2R 9109234..9109452 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:28 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4994666..4996511 322..2168 99 <- Minus
arm_2R 4996576..4996677 220..321 100 <- Minus
arm_2R 4996739..4996957 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:11:17 Download gff for AT28824.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9108360..9110205 322..2168 99 <- Minus
2R 9110270..9110371 220..321 100 <- Minus
2R 9110433..9110651 1..219 100   Minus

AT28824.hyp Sequence

Translation from 1 to 1929

> AT28824.hyp
SSKFNIKLNRSFGQKTSATMCQSGGQMLCEIKNMALSGDPELDGEIRKWI
RWDKCASTACQIMDAVRAKDWDTLRKRLCTRISFGTAGLRACMRAGFDSM
NELVVIQTAQGLCEYIKEQYPDPADWSGRGIVFGYDGRYNSHRFAELSAI
VFLNNDFKVWLFKRYVATPMVPFAILRLQCLAGVMVTASHNPKEDNGYKV
YWTNGAQIIPPHDEGIQESILNNLEPKGSSWDDSAMCSNTMLEDPYDIVV
PPYFDILKKQLPCTSLEANGRCSLSFTYTAMHGVGYAFVKQAFARINLKP
FISVCEQQEPDPEFPTTPMPNPEEGKTSLDLSIKTAKANSSQIILANDPD
ADRLAVAEVREDGSYKLFSGNEVGALLGWWSLELHKMREPDCDVSNCVMI
ASTVSSKILRAMAEREGFQFFETLTGFKWMGNKAIELQQAGKTVLFAFEE
AIGFMVGTTVLDKDGVSAAGHLATMACYLRCKLCMTLQEKLRDIYETYGF
HTTVSSYVICRCPPVIEQIFERLRTWDEGKADTYPTSILNGEYEIENVRD
LTTGFDSSTGDKKATLPTSSSSQMITFTFKNGLVVTLRTSGTEPKMKYYA
EMCGKPDEKNWAKLTNTMNTMVEAIVEEFYEPSKNGLQRRKE*

AT28824.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pmm45A-PA 623 CG8073-PA 1..623 20..642 3316 100 Plus
CG10202-PA 628 CG10202-PA 17..621 31..637 1723 52.7 Plus

AT28824.pep Sequence

Translation from 58 to 1929

> AT28824.pep
MCQSGGQMLCEIKNMALSGDPELDGEIRKWIRWDKCASTACQIMDAVRAK
DWDTLRKRLCTRISFGTAGLRACMRAGFDSMNELVVIQTAQGLCEYIKEQ
YPDPADWSGRGIVFGYDGRYNSHRFAELSAIVFLNNDFKVWLFKRYVATP
MVPFAILRLQCLAGVMVTASHNPKEDNGYKVYWTNGAQIIPPHDEGIQES
ILNNLEPKGSSWDDSAMCSNTMLEDPYDIVVPPYFDILKKQLPCTSLEAN
GRCSLSFTYTAMHGVGYAFVKQAFARINLKPFISVCEQQEPDPEFPTTPM
PNPEEGKTSLDLSIKTAKANSSQIILANDPDADRLAVAEVREDGSYKLFS
GNEVGALLGWWSLELHKMREPDCDVSNCVMIASTVSSKILRAMAEREGFQ
FFETLTGFKWMGNKAIELQQAGKTVLFAFEEAIGFMVGTTVLDKDGVSAA
GHLATMACYLRCKLCMTLQEKLRDIYETYGFHTTVSSYVICRCPPVIEQI
FERLRTWDEGKADTYPTSILNGEYEIENVRDLTTGFDSSTGDKKATLPTS
SSSQMITFTFKNGLVVTLRTSGTEPKMKYYAEMCGKPDEKNWAKLTNTMN
TMVEAIVEEFYEPSKNGLQRRKE*

AT28824.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12709-PA 623 GF12709-PA 1..623 1..623 2811 81.9 Plus
Dana\GF11777-PA 630 GF11777-PA 17..623 12..620 1764 52.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10583-PA 584 GG10583-PA 1..584 1..623 3052 91 Plus
Dere\GG22396-PA 628 GG22396-PA 17..621 12..618 1805 53.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23045-PA 623 GH23045-PA 1..623 1..623 2429 69.2 Plus
Dgri\GH21282-PA 580 GH21282-PA 5..577 14..621 2104 64.7 Plus
Dgri\GH23475-PA 477 GH23475-PA 35..477 181..623 1716 69.3 Plus
Dgri\GH20478-PA 618 GH20478-PA 14..611 12..610 1640 49.9 Plus
Dgri\GH22267-PA 607 GH22267-PA 14..600 12..610 1633 49.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pgm2a-PA 623 CG8073-PA 1..623 1..623 3316 100 Plus
Pgm2b-PA 628 CG10202-PA 17..621 12..618 1723 52.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21114-PA 623 GI21114-PA 1..622 1..623 2365 66.6 Plus
Dmoj\GI19724-PA 625 GI19724-PA 13..622 18..621 2036 63.2 Plus
Dmoj\GI21021-PA 616 GI21021-PA 9..615 4..613 1725 52.5 Plus
Dmoj\GI21115-PA 590 GI21115-PA 16..576 55..622 1723 56.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16851-PA 584 GL16851-PA 1..584 1..623 2453 71.7 Plus
Dper\GL10655-PA 629 GL10655-PA 14..622 12..620 1916 56.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20805-PB 623 GA20805-PB 1..623 1..623 2689 77.2 Plus
Dpse\GA10151-PA 629 GA10151-PA 14..622 12..620 1913 56.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20631-PA 584 GM20631-PA 1..584 1..623 3081 92.3 Plus
Dsec\GM20181-PA 628 GM20181-PA 17..621 12..618 1789 53 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10104-PA 584 GD10104-PA 1..584 1..623 3081 92.3 Plus
Dsim\GD25655-PA 598 GD25655-PA 17..591 12..618 1690 51.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20963-PA 624 GJ20963-PA 1..623 1..623 2469 69.7 Plus
Dvir\GJ20964-PA 686 GJ20964-PA 81..685 18..623 2312 69.3 Plus
Dvir\GJ17598-PA 583 GJ17598-PA 2..580 6..621 2067 63.2 Plus
Dvir\GJ21944-PA 621 GJ21944-PA 9..620 4..618 1771 52.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22961-PA 623 GK22961-PA 6..623 6..623 2618 75.7 Plus
Dwil\GK23293-PA 633 GK23293-PA 20..627 12..619 1849 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22565-PA 584 GE22565-PA 1..584 1..623 3042 90 Plus
Dyak\GE12285-PA 628 GE12285-PA 17..621 12..618 1795 53 Plus