BDGP Sequence Production Resources |
Search the DGRC for AT28881
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 288 |
Well: | 81 |
Vector: | pOTB7 |
Associated Gene/Transcript | primo-2-RC |
Protein status: | AT28881.pep: gold |
Preliminary Size: | 1275 |
Sequenced Size: | 1327 |
Gene | Date | Evidence |
---|---|---|
CG9599 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31311 | 2002-01-18 | Blastp of sequenced clone |
CG31311 | 2003-01-01 | Sim4 clustering to Release 3 |
primo-2 | 2008-04-29 | Release 5.5 accounting |
primo-2 | 2008-08-15 | Release 5.9 accounting |
primo-1 | 2008-08-15 | Release 5.9 accounting |
primo-1 | 2008-12-18 | 5.12 accounting |
primo-2 | 2008-12-18 | 5.12 accounting |
1327 bp (1327 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089477
> AT28881.complete AATTCTTCTTCGCACATTTTTTGAACACTTTTGTACCCAGCCACGCCCAT TGAATTTACTGCAACAACCAAGTTTTATTAAATTTACCGCAGAGTTTAAG TGCGTTCGTAAATCAAAAGACCAATCCCAAAATACTAAAAATGGGCAAAA GATCGCAGAAGAGCAGTGTGCTAATGGTGTGTGTGGGCAACCTATGCCGC TCCCCAATTGCCGAGGCTGTGATGCGTGACTTGGTCGCAAGGGCGGGACT ACAGGGGGAGTGGCATGTGGAGAGCGCCGGGATCGAGGATTGGCATTCCG GCCACCAACCAGATGAGCGTGCACTGAATGTCCTGGCCAGGCACAACATC GAATACAATGGCAAGGCGAGAGTTCTAGCTCCGGAGGACTTCCTCGAATT CGACTACATCTTCGCCATGGATCTGAGCAACCTGGCCGCCCTGAGGCGCA TGGCTCCCAAAGGCACCACTGCCAAGTTGCTGATTCTCGGGAATTTTGGC CTGAAACCAGATGAACGCATCATTGAGGATCCCTATTATGACATTGGTGA AGCATCATTTGAAGAAATTTACCGGCAGTGCAGCATAGCGTGTAGGAATT TTCTGAAACAAGCGCGCTTAAAACAGATAATGTAGATAAGTCCCCGACAC CGCCTAAGGGTTAAGCCATCCGACCAACAAGAACAGCTGATAACACGCGT TGCCAACTAACTGTTGAGGCCAGGGCTGCAGGTTGCGGAACGCTCAATTG CGAGCCGGAAAAAAAACAACACACAAAATTGTTCGTAAAATTCCCGTGTA AATTGACTCAAAGATGGTTCGAAAAGTGCTAATGATTTGTTTGGGCAACA TCTGCAGGTCCCCAATTGCGGAGGTCGTGATGGTGGACACCCTGGAGAAG GCGAATGTCAAGGACGTGGAGGTCGATAGTGCAGCAATTGGTGGCTGGCA CGTGGGCAACCGCGCAGATCCGCGGGCCATCAGCACGCTGCAAAAGCACG GCCTCAAGTGCACCCACATCGTTCGGCAGATCCGCAAGCAGGACTTCTCG GAATTCGACTACATCTTCGGCATGGACGAGGACAACATGAGCGAGCTTAG GCGACTGGCGCCCAAAGACTCCAAGGCGGAGCTCCTCATGCTGGGCGATT TCGGACTTGAGAAGAAGAACCGCATCATTGAGGATCCCTACTATGTAAGA CACTTTTAGAGTCCTGATTTCACCTAACTAGAATACGAAGTTGCAGTAGA GAAAAAGTAGAGAGTAGAGAACTATTCCATACATTAATAGAATATCAATA ACTTAACCTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9535081..9535544 | 1307..844 | 2110 | 97 | Minus |
chr3R | 27901430 | chr3R | 9536106..9536460 | 540..186 | 1700 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 9535607..9535913 | 845..540 | 1470 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 9536532..9536718 | 187..1 | 890 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13710190..13710659 | 1313..844 | 2140 | 97 | Minus |
3R | 32079331 | 3R | 13711218..13711572 | 540..186 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 13710722..13711027 | 845..540 | 1530 | 100 | Minus |
3R | 32079331 | 3R | 13711644..13711830 | 187..1 | 905 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13451021..13451490 | 1313..844 | 2140 | 97 | Minus |
3R | 31820162 | 3R | 13452049..13452403 | 540..186 | 1775 | 100 | Minus |
3R | 31820162 | 3R | 13451553..13451858 | 845..540 | 1530 | 100 | Minus |
3R | 31820162 | 3R | 13452475..13452661 | 187..1 | 905 | 98.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9536533..9536718 | 1..186 | 98 | Minus | |
chr3R | 9535079..9535543 | 845..1309 | 96 | <- | Minus |
chr3R | 9535608..9535913 | 540..844 | 99 | <- | Minus |
chr3R | 9536107..9536459 | 187..539 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-2-RC | 1..495 | 141..635 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-2-RC | 1..495 | 141..635 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-2-RC | 1..495 | 141..635 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-2-RC | 1..495 | 141..635 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-2-RC | 1..495 | 141..635 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-1-RC | 1..1308 | 1..1309 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-1-RC | 1..1308 | 1..1309 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-1-RA | 6..1200 | 1..1195 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-1-RC | 1..1308 | 1..1309 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
primo-2-RC | 6..1200 | 1..1195 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13710194..13710658 | 845..1309 | 96 | <- | Minus |
3R | 13710723..13711027 | 540..844 | 100 | <- | Minus |
3R | 13711219..13711571 | 187..539 | 100 | <- | Minus |
3R | 13711645..13711830 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13710194..13710658 | 845..1309 | 96 | <- | Minus |
3R | 13710723..13711027 | 540..844 | 100 | <- | Minus |
3R | 13711219..13711571 | 187..539 | 100 | <- | Minus |
3R | 13711645..13711830 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13710194..13710658 | 845..1309 | 96 | <- | Minus |
3R | 13710723..13711027 | 540..844 | 100 | <- | Minus |
3R | 13711219..13711571 | 187..539 | 100 | <- | Minus |
3R | 13711645..13711830 | 1..186 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9536941..9537293 | 187..539 | 100 | <- | Minus |
arm_3R | 9537367..9537552 | 1..186 | 98 | Minus | |
arm_3R | 9535916..9536380 | 845..1309 | 96 | <- | Minus |
arm_3R | 9536445..9536749 | 540..844 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13451554..13451858 | 540..844 | 100 | <- | Minus |
3R | 13451025..13451489 | 845..1309 | 96 | <- | Minus |
3R | 13452050..13452402 | 187..539 | 100 | <- | Minus |
3R | 13452476..13452661 | 1..186 | 98 | Minus |
Translation from 2 to 634
> AT28881.hyp FFFAHFLNTFVPSHAHLIYCNNKVLLNLPQSLSAFVNQKTNPKILKMGKR SQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIEDWHSG HQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAALRRM APKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIACRNF LKQARLKQIM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
primo-2-PC | 164 | CG33747-PC | 1..164 | 47..210 | 853 | 100 | Plus |
primo-1-PB | 155 | CG33748-PB | 5..151 | 56..203 | 397 | 50 | Plus |
primo-1-PA | 155 | CG33748-PA | 5..151 | 56..203 | 397 | 50 | Plus |
CG31469-PA | 164 | CG31469-PA | 3..151 | 56..202 | 324 | 42.7 | Plus |
CG14297-PA | 250 | CG14297-PA | 6..152 | 56..201 | 209 | 31.5 | Plus |
Translation from 140 to 634
> AT28881.pep MGKRSQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIED WHSGHQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAA LRRMAPKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIA CRNFLKQARLKQIM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18146-PA | 164 | GF18146-PA | 1..164 | 1..164 | 655 | 71.3 | Plus |
Dana\GF18147-PA | 155 | GF18147-PA | 3..151 | 8..157 | 382 | 46.7 | Plus |
Dana\GF18148-PA | 157 | GF18148-PA | 3..154 | 10..159 | 336 | 41.7 | Plus |
Dana\GF23217-PA | 294 | GF23217-PA | 6..88 | 10..94 | 204 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17024-PA | 164 | GG17024-PA | 1..164 | 1..164 | 779 | 86.6 | Plus |
Dere\GG17025-PA | 155 | GG17025-PA | 5..151 | 10..157 | 403 | 49.3 | Plus |
Dere\GG17027-PA | 165 | GG17027-PA | 3..154 | 10..159 | 325 | 39.2 | Plus |
Dere\GG23073-PA | 249 | GG23073-PA | 6..88 | 10..94 | 205 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14045-PA | 168 | GH14045-PA | 1..167 | 1..164 | 481 | 59.3 | Plus |
Dgri\GH14046-PA | 155 | GH14046-PA | 5..151 | 10..157 | 410 | 50 | Plus |
Dgri\GH14047-PA | 155 | GH14047-PA | 3..152 | 10..157 | 297 | 37.7 | Plus |
Dgri\GH14482-PA | 234 | GH14482-PA | 6..156 | 10..161 | 197 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
primo-2-PC | 164 | CG33747-PC | 1..164 | 1..164 | 853 | 100 | Plus |
primo-1-PB | 155 | CG33748-PB | 5..151 | 10..157 | 397 | 50 | Plus |
primo-1-PA | 155 | CG33748-PA | 5..151 | 10..157 | 397 | 50 | Plus |
CG31469-PA | 164 | CG31469-PA | 3..151 | 10..156 | 324 | 42.7 | Plus |
CG14297-PA | 250 | CG14297-PA | 6..152 | 10..155 | 209 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24419-PA | 165 | GI24419-PA | 1..165 | 1..163 | 499 | 55.8 | Plus |
Dmoj\GI24420-PA | 156 | GI24420-PA | 3..156 | 7..161 | 408 | 49 | Plus |
Dmoj\GI24422-PA | 157 | GI24422-PA | 3..154 | 10..159 | 284 | 38.3 | Plus |
Dmoj\GI22967-PA | 239 | GI22967-PA | 6..152 | 10..155 | 188 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24448-PA | 159 | GL24448-PA | 1..156 | 1..157 | 441 | 51.6 | Plus |
Dper\GL24449-PA | 165 | GL24449-PA | 3..157 | 10..162 | 316 | 38.5 | Plus |
Dper\GL23438-PA | 260 | GL23438-PA | 6..152 | 10..155 | 202 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16170-PB | 154 | GA16170-PB | 5..151 | 10..157 | 416 | 50.7 | Plus |
Dpse\GA16170-PC | 137 | GA16170-PC | 5..127 | 10..133 | 351 | 51.6 | Plus |
Dpse\GA16272-PA | 165 | GA16272-PA | 3..152 | 10..157 | 308 | 38.4 | Plus |
Dpse\GA12886-PA | 260 | GA12886-PA | 6..157 | 10..160 | 202 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25908-PA | 164 | GM25908-PA | 1..164 | 1..164 | 821 | 92.7 | Plus |
Dsec\GM25909-PA | 155 | GM25909-PA | 5..151 | 10..157 | 400 | 48.6 | Plus |
Dsec\GM25911-PA | 159 | GM25911-PA | 3..152 | 10..157 | 326 | 41.7 | Plus |
Dsec\GM17892-PA | 250 | GM17892-PA | 6..155 | 10..146 | 224 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20476-PA | 164 | GD20476-PA | 1..164 | 1..164 | 821 | 92.7 | Plus |
Dsim\GD20477-PA | 150 | GD20477-PA | 5..146 | 10..157 | 362 | 46.6 | Plus |
Dsim\GD20478-PA | 165 | GD20478-PA | 3..152 | 10..157 | 326 | 41.7 | Plus |
Dsim\GD19253-PA | 250 | GD19253-PA | 6..152 | 10..155 | 221 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14278-PA | 168 | GJ14278-PA | 1..167 | 1..164 | 501 | 56.3 | Plus |
Dvir\GJ14279-PA | 155 | GJ14279-PA | 5..151 | 10..157 | 419 | 50 | Plus |
Dvir\GJ14280-PA | 157 | GJ14280-PA | 3..152 | 10..157 | 321 | 39.1 | Plus |
Dvir\GJ14544-PA | 235 | GJ14544-PA | 6..147 | 10..138 | 201 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13060-PA | 164 | GK13060-PA | 1..164 | 1..164 | 575 | 62.4 | Plus |
Dwil\GK13063-PA | 155 | GK13063-PA | 5..151 | 10..157 | 394 | 49.3 | Plus |
Dwil\GK13064-PA | 160 | GK13064-PA | 3..154 | 10..159 | 319 | 39.6 | Plus |
Dwil\GK22744-PA | 228 | GK22744-PA | 6..160 | 10..160 | 210 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24417-PA | 164 | GE24417-PA | 1..164 | 1..164 | 774 | 87.2 | Plus |
Dyak\primo-1-PA | 155 | GE24418-PA | 5..151 | 10..157 | 410 | 50 | Plus |
Dyak\GE24419-PA | 165 | GE24419-PA | 3..154 | 10..159 | 324 | 39.9 | Plus |
Dyak\GE25562-PA | 249 | GE25562-PA | 6..155 | 10..146 | 209 | 33.6 | Plus |