Clone AT28881 Report

Search the DGRC for AT28881

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:288
Well:81
Vector:pOTB7
Associated Gene/Transcriptprimo-2-RC
Protein status:AT28881.pep: gold
Preliminary Size:1275
Sequenced Size:1327

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9599 2002-01-01 Sim4 clustering to Release 2
CG31311 2002-01-18 Blastp of sequenced clone
CG31311 2003-01-01 Sim4 clustering to Release 3
primo-2 2008-04-29 Release 5.5 accounting
primo-2 2008-08-15 Release 5.9 accounting
primo-1 2008-08-15 Release 5.9 accounting
primo-1 2008-12-18 5.12 accounting
primo-2 2008-12-18 5.12 accounting

Clone Sequence Records

AT28881.complete Sequence

1327 bp (1327 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089477

> AT28881.complete
AATTCTTCTTCGCACATTTTTTGAACACTTTTGTACCCAGCCACGCCCAT
TGAATTTACTGCAACAACCAAGTTTTATTAAATTTACCGCAGAGTTTAAG
TGCGTTCGTAAATCAAAAGACCAATCCCAAAATACTAAAAATGGGCAAAA
GATCGCAGAAGAGCAGTGTGCTAATGGTGTGTGTGGGCAACCTATGCCGC
TCCCCAATTGCCGAGGCTGTGATGCGTGACTTGGTCGCAAGGGCGGGACT
ACAGGGGGAGTGGCATGTGGAGAGCGCCGGGATCGAGGATTGGCATTCCG
GCCACCAACCAGATGAGCGTGCACTGAATGTCCTGGCCAGGCACAACATC
GAATACAATGGCAAGGCGAGAGTTCTAGCTCCGGAGGACTTCCTCGAATT
CGACTACATCTTCGCCATGGATCTGAGCAACCTGGCCGCCCTGAGGCGCA
TGGCTCCCAAAGGCACCACTGCCAAGTTGCTGATTCTCGGGAATTTTGGC
CTGAAACCAGATGAACGCATCATTGAGGATCCCTATTATGACATTGGTGA
AGCATCATTTGAAGAAATTTACCGGCAGTGCAGCATAGCGTGTAGGAATT
TTCTGAAACAAGCGCGCTTAAAACAGATAATGTAGATAAGTCCCCGACAC
CGCCTAAGGGTTAAGCCATCCGACCAACAAGAACAGCTGATAACACGCGT
TGCCAACTAACTGTTGAGGCCAGGGCTGCAGGTTGCGGAACGCTCAATTG
CGAGCCGGAAAAAAAACAACACACAAAATTGTTCGTAAAATTCCCGTGTA
AATTGACTCAAAGATGGTTCGAAAAGTGCTAATGATTTGTTTGGGCAACA
TCTGCAGGTCCCCAATTGCGGAGGTCGTGATGGTGGACACCCTGGAGAAG
GCGAATGTCAAGGACGTGGAGGTCGATAGTGCAGCAATTGGTGGCTGGCA
CGTGGGCAACCGCGCAGATCCGCGGGCCATCAGCACGCTGCAAAAGCACG
GCCTCAAGTGCACCCACATCGTTCGGCAGATCCGCAAGCAGGACTTCTCG
GAATTCGACTACATCTTCGGCATGGACGAGGACAACATGAGCGAGCTTAG
GCGACTGGCGCCCAAAGACTCCAAGGCGGAGCTCCTCATGCTGGGCGATT
TCGGACTTGAGAAGAAGAACCGCATCATTGAGGATCCCTACTATGTAAGA
CACTTTTAGAGTCCTGATTTCACCTAACTAGAATACGAAGTTGCAGTAGA
GAAAAAGTAGAGAGTAGAGAACTATTCCATACATTAATAGAATATCAATA
ACTTAACCTAAAAAAAAAAAAAAAAAA

AT28881.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RC 1309 primo-1-RC 1..1307 1..1307 6310 98.8 Plus
primo-2-RB 1309 primo-2-RB 1..1307 1..1307 6310 98.8 Plus
primo-2-RC 1358 primo-2-RC 17..1211 1..1195 5885 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9535081..9535544 1307..844 2110 97 Minus
chr3R 27901430 chr3R 9536106..9536460 540..186 1700 98.6 Minus
chr3R 27901430 chr3R 9535607..9535913 845..540 1470 99.3 Minus
chr3R 27901430 chr3R 9536532..9536718 187..1 890 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13710190..13710659 1313..844 2140 97 Minus
3R 32079331 3R 13711218..13711572 540..186 1775 100 Minus
3R 32079331 3R 13710722..13711027 845..540 1530 100 Minus
3R 32079331 3R 13711644..13711830 187..1 905 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13451021..13451490 1313..844 2140 97 Minus
3R 31820162 3R 13452049..13452403 540..186 1775 100 Minus
3R 31820162 3R 13451553..13451858 845..540 1530 100 Minus
3R 31820162 3R 13452475..13452661 187..1 905 98.9 Minus
Blast to na_te.dros performed on 2019-03-16 08:45:54 has no hits.

AT28881.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:47:14 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9536533..9536718 1..186 98   Minus
chr3R 9535079..9535543 845..1309 96 <- Minus
chr3R 9535608..9535913 540..844 99 <- Minus
chr3R 9536107..9536459 187..539 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:28:36 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 141..635 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:06 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 141..635 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:53:18 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 141..635 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:13:28 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 141..635 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:49:35 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 141..635 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:37 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RC 1..1308 1..1309 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:06 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RC 1..1308 1..1309 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:18 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 6..1200 1..1195 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:13:28 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RC 1..1308 1..1309 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:49:35 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 6..1200 1..1195 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:14 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13710194..13710658 845..1309 96 <- Minus
3R 13710723..13711027 540..844 100 <- Minus
3R 13711219..13711571 187..539 100 <- Minus
3R 13711645..13711830 1..186 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:14 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13710194..13710658 845..1309 96 <- Minus
3R 13710723..13711027 540..844 100 <- Minus
3R 13711219..13711571 187..539 100 <- Minus
3R 13711645..13711830 1..186 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:14 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13710194..13710658 845..1309 96 <- Minus
3R 13710723..13711027 540..844 100 <- Minus
3R 13711219..13711571 187..539 100 <- Minus
3R 13711645..13711830 1..186 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:18 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536941..9537293 187..539 100 <- Minus
arm_3R 9537367..9537552 1..186 98   Minus
arm_3R 9535916..9536380 845..1309 96 <- Minus
arm_3R 9536445..9536749 540..844 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:32 Download gff for AT28881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13451554..13451858 540..844 100 <- Minus
3R 13451025..13451489 845..1309 96 <- Minus
3R 13452050..13452402 187..539 100 <- Minus
3R 13452476..13452661 1..186 98   Minus

AT28881.hyp Sequence

Translation from 2 to 634

> AT28881.hyp
FFFAHFLNTFVPSHAHLIYCNNKVLLNLPQSLSAFVNQKTNPKILKMGKR
SQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIEDWHSG
HQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAALRRM
APKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIACRNF
LKQARLKQIM*

AT28881.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
primo-2-PC 164 CG33747-PC 1..164 47..210 853 100 Plus
primo-1-PB 155 CG33748-PB 5..151 56..203 397 50 Plus
primo-1-PA 155 CG33748-PA 5..151 56..203 397 50 Plus
CG31469-PA 164 CG31469-PA 3..151 56..202 324 42.7 Plus
CG14297-PA 250 CG14297-PA 6..152 56..201 209 31.5 Plus

AT28881.pep Sequence

Translation from 140 to 634

> AT28881.pep
MGKRSQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIED
WHSGHQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAA
LRRMAPKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIA
CRNFLKQARLKQIM*

AT28881.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18146-PA 164 GF18146-PA 1..164 1..164 655 71.3 Plus
Dana\GF18147-PA 155 GF18147-PA 3..151 8..157 382 46.7 Plus
Dana\GF18148-PA 157 GF18148-PA 3..154 10..159 336 41.7 Plus
Dana\GF23217-PA 294 GF23217-PA 6..88 10..94 204 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17024-PA 164 GG17024-PA 1..164 1..164 779 86.6 Plus
Dere\GG17025-PA 155 GG17025-PA 5..151 10..157 403 49.3 Plus
Dere\GG17027-PA 165 GG17027-PA 3..154 10..159 325 39.2 Plus
Dere\GG23073-PA 249 GG23073-PA 6..88 10..94 205 41.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14045-PA 168 GH14045-PA 1..167 1..164 481 59.3 Plus
Dgri\GH14046-PA 155 GH14046-PA 5..151 10..157 410 50 Plus
Dgri\GH14047-PA 155 GH14047-PA 3..152 10..157 297 37.7 Plus
Dgri\GH14482-PA 234 GH14482-PA 6..156 10..161 197 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
primo-2-PC 164 CG33747-PC 1..164 1..164 853 100 Plus
primo-1-PB 155 CG33748-PB 5..151 10..157 397 50 Plus
primo-1-PA 155 CG33748-PA 5..151 10..157 397 50 Plus
CG31469-PA 164 CG31469-PA 3..151 10..156 324 42.7 Plus
CG14297-PA 250 CG14297-PA 6..152 10..155 209 31.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24419-PA 165 GI24419-PA 1..165 1..163 499 55.8 Plus
Dmoj\GI24420-PA 156 GI24420-PA 3..156 7..161 408 49 Plus
Dmoj\GI24422-PA 157 GI24422-PA 3..154 10..159 284 38.3 Plus
Dmoj\GI22967-PA 239 GI22967-PA 6..152 10..155 188 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24448-PA 159 GL24448-PA 1..156 1..157 441 51.6 Plus
Dper\GL24449-PA 165 GL24449-PA 3..157 10..162 316 38.5 Plus
Dper\GL23438-PA 260 GL23438-PA 6..152 10..155 202 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16170-PB 154 GA16170-PB 5..151 10..157 416 50.7 Plus
Dpse\GA16170-PC 137 GA16170-PC 5..127 10..133 351 51.6 Plus
Dpse\GA16272-PA 165 GA16272-PA 3..152 10..157 308 38.4 Plus
Dpse\GA12886-PA 260 GA12886-PA 6..157 10..160 202 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25908-PA 164 GM25908-PA 1..164 1..164 821 92.7 Plus
Dsec\GM25909-PA 155 GM25909-PA 5..151 10..157 400 48.6 Plus
Dsec\GM25911-PA 159 GM25911-PA 3..152 10..157 326 41.7 Plus
Dsec\GM17892-PA 250 GM17892-PA 6..155 10..146 224 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20476-PA 164 GD20476-PA 1..164 1..164 821 92.7 Plus
Dsim\GD20477-PA 150 GD20477-PA 5..146 10..157 362 46.6 Plus
Dsim\GD20478-PA 165 GD20478-PA 3..152 10..157 326 41.7 Plus
Dsim\GD19253-PA 250 GD19253-PA 6..152 10..155 221 32.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14278-PA 168 GJ14278-PA 1..167 1..164 501 56.3 Plus
Dvir\GJ14279-PA 155 GJ14279-PA 5..151 10..157 419 50 Plus
Dvir\GJ14280-PA 157 GJ14280-PA 3..152 10..157 321 39.1 Plus
Dvir\GJ14544-PA 235 GJ14544-PA 6..147 10..138 201 32.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13060-PA 164 GK13060-PA 1..164 1..164 575 62.4 Plus
Dwil\GK13063-PA 155 GK13063-PA 5..151 10..157 394 49.3 Plus
Dwil\GK13064-PA 160 GK13064-PA 3..154 10..159 319 39.6 Plus
Dwil\GK22744-PA 228 GK22744-PA 6..160 10..160 210 31.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24417-PA 164 GE24417-PA 1..164 1..164 774 87.2 Plus
Dyak\primo-1-PA 155 GE24418-PA 5..151 10..157 410 50 Plus
Dyak\GE24419-PA 165 GE24419-PA 3..154 10..159 324 39.9 Plus
Dyak\GE25562-PA 249 GE25562-PA 6..155 10..146 209 33.6 Plus