Clone AT29119 Report

Search the DGRC for AT29119

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:291
Well:19
Vector:pOTB7
Associated Gene/TranscriptCG31803-RA
Protein status:AT29119.pep: gold
Sequenced Size:989

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6840 2002-01-01 Sim4 clustering to Release 2
CG31803 2002-01-11 Blastp of sequenced clone
CG31803 2003-01-01 Sim4 clustering to Release 3
CG31803 2008-04-29 Release 5.5 accounting
CG31803 2008-08-15 Release 5.9 accounting
CG31803 2008-12-18 5.12 accounting

Clone Sequence Records

AT29119.complete Sequence

989 bp (989 high quality bases) assembled on 2002-01-11

GenBank Submission: AY089478

> AT29119.complete
ATTTTATTTCAACACTTCACATATAAATTGCTAAGATACTTTCGTCATGA
ATTTGGAGTTCTTCACCGAGGGCCTCGACTGCCTAATGTACTGCGGCATG
AAGCTGTCGCCGGAGCAGCGCATCTTGATTGAAAACTCGCTGATCGCTTT
ACAAAATGACAATCGTTTTACGGGCATGTATCTTTGGGGTCGCATTACGG
CCACCAAGAACGATTACTACATTGCCTTTGGCTACACTAATGACTGTCTC
AAGGATCGCAAGTATTTCTACAGTCTGGACCAGTTCCAATGGCAGTTGCT
GCCGTTCGTACAGAGCCCCAAGATATTTCAGGCGACTATATTGGCAAGGG
AGCCATTTATAGGAGATCCCAGCCTGATGACCTACGTTAAGCTGGACCCC
ACTTTTGACATCGTAGGCAATCAGGTGGCTGGTATCAGCCGCCCTGAAGT
GGTCAAGCTTAAGGAGGAGGAACGGCTGGCAGCCATTGTGTTTATTATAA
CAGAGGAGTGTGCCATTTGCCCACGCGGAGCCTTTTACAAGATGACCGAT
GGTCGTGTTATACCCAACCAGATGTTTCGTGGACTGAATGACTTGCAGAT
CGACAACCAATCATATTACCAGCTCTATCGCCTGCCCCGCAATGATCTCA
AAGTCAATTTGGCCAAGAGGAGCGACTATAACTATGCTATTGACTTTCTG
GACACCATTGACTGCGTAATACCACTGTGTCAGGCTTTTGCCCTGAATAT
GCAACGGAACGAGGGTTTGGTAATAATCAAGTCGTGCCTTTGGTTGGGCA
TGACATTCTTTCACAAAATCAACTCCCACAAGCATGGTTTCCTTTACTTG
GGCGATGGCAAGAAGAACTTTGACTTGCTTTTCATGTATTAAGGTTGCTT
TTGCATAAATATGTTTTTTTTTTGAGCATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT29119.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31803-RA 977 CG31803-RA 49..977 1..929 4645 100 Plus
nc_3491.a 560 nc_3491.a 1..368 28..395 1840 100 Plus
nc_3491.a 560 nc_3491.a 367..560 416..609 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17410302..17410837 929..394 2680 100 Minus
chr2L 23010047 chr2L 17410892..17411286 395..1 1975 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:01:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17411648..17412184 930..394 2685 100 Minus
2L 23513712 2L 17412239..17412633 395..1 1975 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17411648..17412184 930..394 2685 100 Minus
2L 23513712 2L 17412239..17412633 395..1 1975 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:12:34 has no hits.

AT29119.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:13:49 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17410302..17410836 395..929 100 <- Minus
chr2L 17410893..17411286 1..394 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:29:07 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..846 47..892 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:48:48 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..846 47..892 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:58 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..846 47..892 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:06 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..846 47..892 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:58 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..846 47..892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:12:47 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..929 1..929 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:48:48 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..929 1..929 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:58 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..929 1..929 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:06 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..929 1..929 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:58 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
CG31803-RA 1..929 1..929 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:49 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17411649..17412183 395..929 100 <- Minus
2L 17412240..17412633 1..394 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:49 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17411649..17412183 395..929 100 <- Minus
2L 17412240..17412633 1..394 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:49 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17411649..17412183 395..929 100 <- Minus
2L 17412240..17412633 1..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:58 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17411649..17412183 395..929 100 <- Minus
arm_2L 17412240..17412633 1..394 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:01 Download gff for AT29119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17411649..17412183 395..929 100 <- Minus
2L 17412240..17412633 1..394 100   Minus

AT29119.pep Sequence

Translation from 46 to 891

> AT29119.pep
MNLEFFTEGLDCLMYCGMKLSPEQRILIENSLIALQNDNRFTGMYLWGRI
TATKNDYYIAFGYTNDCLKDRKYFYSLDQFQWQLLPFVQSPKIFQATILA
REPFIGDPSLMTYVKLDPTFDIVGNQVAGISRPEVVKLKEEERLAAIVFI
ITEECAICPRGAFYKMTDGRVIPNQMFRGLNDLQIDNQSYYQLYRLPRND
LKVNLAKRSDYNYAIDFLDTIDCVIPLCQAFALNMQRNEGLVIIKSCLWL
GMTFFHKINSHKHGFLYLGDGKKNFDLLFMY*

AT29119.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14795-PA 281 GF14795-PA 1..281 1..281 1426 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21749-PA 281 GG21749-PA 1..281 1..281 1486 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10080-PA 281 GH10080-PA 1..281 1..281 1312 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31803-PA 281 CG31803-PA 1..281 1..281 1500 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16574-PA 281 GI16574-PA 1..281 1..281 1304 84.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18756-PA 281 GL18756-PA 1..281 1..281 1394 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16489-PA 281 GA16489-PA 1..281 1..281 1394 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17132-PA 281 GM17132-PA 1..281 1..281 1498 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21873-PA 281 GD21873-PA 1..281 1..281 1506 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16234-PA 281 GJ16234-PA 1..281 1..281 1326 86.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24831-PA 281 GK24831-PA 1..281 1..281 1365 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13139-PA 281 GE13139-PA 1..281 1..281 1496 99.3 Plus

AT29119.hyp Sequence

Translation from 46 to 891

> AT29119.hyp
MNLEFFTEGLDCLMYCGMKLSPEQRILIENSLIALQNDNRFTGMYLWGRI
TATKNDYYIAFGYTNDCLKDRKYFYSLDQFQWQLLPFVQSPKIFQATILA
REPFIGDPSLMTYVKLDPTFDIVGNQVAGISRPEVVKLKEEERLAAIVFI
ITEECAICPRGAFYKMTDGRVIPNQMFRGLNDLQIDNQSYYQLYRLPRND
LKVNLAKRSDYNYAIDFLDTIDCVIPLCQAFALNMQRNEGLVIIKSCLWL
GMTFFHKINSHKHGFLYLGDGKKNFDLLFMY*

AT29119.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31803-PA 281 CG31803-PA 1..281 1..281 1500 100 Plus