BDGP Sequence Production Resources |
Search the DGRC for AT29239
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 292 |
Well: | 39 |
Vector: | pOTB7 |
Associated Gene/Transcript | mRpL47-RB |
Protein status: | AT29239.pep: gold |
Preliminary Size: | 623 |
Sequenced Size: | 1124 |
Gene | Date | Evidence |
---|---|---|
CG9378 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9378 | 2002-01-11 | Blastp of sequenced clone |
CG9378 | 2003-01-01 | Sim4 clustering to Release 3 |
Rlc1 | 2008-04-29 | Release 5.5 accounting |
Rlc1 | 2008-08-15 | Release 5.9 accounting |
Rlc1 | 2008-12-18 | 5.12 accounting |
1124 bp (1124 high quality bases) assembled on 2002-01-11
GenBank Submission: AY089479
> AT29239.complete GTAAACTTCAGTCGATTTGAAGCGAAAAATTCGATTTTTCATTAGCACTG AGCGAAGCGCAACTAGAGCTGGCCAACAAGTCGATGCTGAAATTATACTA TCGACTAATTTCAGTTGAAATGCATGGCAGCCCTGAAATGGAGTAAAGCC CGGCTAAAAATGTAGTACGCACGCAATCCAATAAATCGATACAAAAAAGT ATCGATTGTTATTGCTTCAGCTGTTTTGTTCGGTCGAAAAAATGTCTTCG GCGTTAATAAAATGTTTAAATTTGGCAAAAACTGTGGGAAATGCGACAGT CAGGAGCTTTTTGGCAGCTCCCAAGCAGCCATGGCAGTCGTGCAGTGCGG CTGCCCTGCAAACGCCGCATGTTCAAATGCCGATGCAAATGCACACTTCC GCTGTTCGCCGGGATCTTATGGAGTTCTTCGACGACAAGAAGAACTGGAG CGAGAATGAGGTGAAGGTGGGCCGCGCCTGGCGGACGGAGGAGCTGCGTA TCAAGTCCAACAAGGAGCTGCACCAGCTGTGGTTCGTGCTCCTCAAGGAG CGCAACATGCTGCTGACCATGGAGCACGAGTGCAATGACAAAATGGAAGT CTTCCCTAGTCCGGAGCGCATCGATAAGGTGAAAATCTCCATGGAAAACC TGGAGACAGTAGTGAGGGAGCGGAACAAGGCGTATCACCTGCTGGAAACA GGTGAAACGGGTGAACGGCCCCAGAAGGCGGTGAAGAACGCATTTGGCCT GCAGGTCTCATACAAAGCATGCGAACACGCCCTGCCGCCCTTCATGAACC TCAAATGGATTAAATCCCGCAACATTGGCTACGGCGGCAGAGCTGTGAAC AGATTCCTCTTAAAGTACAGGGAGAAACTCTACAATGCCAAGCGCAAGGC CAAGAACCGCTCCCGCAACGAAGTCATGATGATCCTGCGTCGCAACCCCA ATTTCGATCTGGATGTGCTGCGTCGCCAGTTCCCCGATGTCAACGTGGAC AAGCTGCGCAACGAGGACAAGATTCGTGGTCACTATGTGCCCAAAGTTGG CGTGTGAGCAGCAAAGCTGCAGTTATTTAGTTATTAAAACAACAAAATAC CATTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rlc1-RB | 1110 | Rlc1-RB | 1..1104 | 1..1104 | 5520 | 100 | Plus |
Rlc1.a | 1150 | Rlc1.a | 1..906 | 1..906 | 4530 | 100 | Plus |
Rlc1-RA | 1150 | Rlc1-RA | 1..906 | 1..906 | 4530 | 100 | Plus |
Rlc1.a | 1150 | Rlc1.a | 960..1150 | 907..1097 | 955 | 100 | Plus |
Rlc1-RA | 1150 | Rlc1-RA | 960..1150 | 907..1097 | 955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5341591..5341935 | 345..1 | 1725 | 100 | Minus |
chr3R | 27901430 | chr3R | 5341228..5341514 | 630..344 | 1435 | 100 | Minus |
chr3R | 27901430 | chr3R | 5340901..5341180 | 906..627 | 1400 | 100 | Minus |
chr3R | 27901430 | chr3R | 5340650..5340847 | 1104..907 | 990 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9515763..9516107 | 345..1 | 1725 | 100 | Minus |
3R | 32079331 | 3R | 9515399..9515686 | 631..344 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 9515073..9515352 | 906..627 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9514822..9515019 | 1104..907 | 990 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9256594..9256938 | 345..1 | 1725 | 100 | Minus |
3R | 31820162 | 3R | 9256230..9256517 | 631..344 | 1440 | 100 | Minus |
3R | 31820162 | 3R | 9255904..9256183 | 906..627 | 1400 | 100 | Minus |
3R | 31820162 | 3R | 9255653..9255850 | 1104..907 | 990 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5340901..5341178 | 629..906 | 100 | <- | Minus |
chr3R | 5340650..5340847 | 907..1104 | 100 | <- | Minus |
chr3R | 5341230..5341512 | 346..628 | 100 | <- | Minus |
chr3R | 5341591..5341935 | 1..345 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlc1-RB | 1..816 | 242..1057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlc1-RB | 1..816 | 242..1057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL47-RB | 1..816 | 242..1057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlc1-RB | 1..816 | 242..1057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL47-RB | 1..816 | 242..1057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlc1-RB | 1..1104 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlc1-RB | 1..1104 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL47-RB | 1..905 | 200..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlc1-RB | 1..1104 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL47-RB | 1..905 | 200..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9514822..9515019 | 907..1104 | 100 | <- | Minus |
3R | 9515073..9515350 | 629..906 | 100 | <- | Minus |
3R | 9515402..9515684 | 346..628 | 100 | <- | Minus |
3R | 9515763..9516107 | 1..345 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9514822..9515019 | 907..1104 | 100 | <- | Minus |
3R | 9515073..9515350 | 629..906 | 100 | <- | Minus |
3R | 9515402..9515684 | 346..628 | 100 | <- | Minus |
3R | 9515763..9516107 | 1..345 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9514822..9515019 | 907..1104 | 100 | <- | Minus |
3R | 9515073..9515350 | 629..906 | 100 | <- | Minus |
3R | 9515402..9515684 | 346..628 | 100 | <- | Minus |
3R | 9515763..9516107 | 1..345 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5340544..5340741 | 907..1104 | 100 | <- | Minus |
arm_3R | 5340795..5341072 | 629..906 | 100 | <- | Minus |
arm_3R | 5341124..5341406 | 346..628 | 100 | <- | Minus |
arm_3R | 5341485..5341829 | 1..345 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9255904..9256181 | 629..906 | 100 | <- | Minus |
3R | 9256233..9256515 | 346..628 | 100 | <- | Minus |
3R | 9256594..9256938 | 1..345 | 100 | Minus | |
3R | 9255653..9255850 | 907..1104 | 100 | <- | Minus |
Translation from 241 to 1056
> AT29239.pep MSSALIKCLNLAKTVGNATVRSFLAAPKQPWQSCSAAALQTPHVQMPMQM HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVL LKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL LETGETGERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRNIGYGGR AVNRFLLKYREKLYNAKRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDV NVDKLRNEDKIRGHYVPKVGV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16056-PA | 267 | GF16056-PA | 1..265 | 1..269 | 1236 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17365-PA | 272 | GG17365-PA | 1..272 | 1..271 | 1385 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19393-PA | 273 | GH19393-PA | 1..271 | 1..269 | 1046 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL47-PB | 271 | CG9378-PB | 1..271 | 1..271 | 1422 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22598-PA | 270 | GI22598-PA | 1..268 | 1..269 | 1083 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22226-PA | 268 | GL22226-PA | 1..268 | 1..271 | 1222 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27426-PA | 268 | GA27426-PA | 1..268 | 1..271 | 1215 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26250-PA | 271 | GM26250-PA | 1..271 | 1..271 | 1444 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20790-PA | 271 | GD20790-PA | 1..271 | 1..271 | 1424 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10316-PA | 270 | GJ10316-PA | 1..268 | 1..269 | 1086 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13453-PA | 268 | GK13453-PA | 1..268 | 1..271 | 1085 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24770-PA | 278 | GE24770-PA | 1..278 | 1..271 | 1397 | 94.2 | Plus |
Translation from 241 to 1056
> AT29239.hyp MSSALIKCLNLAKTVGNATVRSFLAAPKQPWQSCSAAALQTPHVQMPMQM HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVL LKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL LETGETGERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRNIGYGGR AVNRFLLKYREKLYNAKRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDV NVDKLRNEDKIRGHYVPKVGV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL47-PB | 271 | CG9378-PB | 1..271 | 1..271 | 1422 | 100 | Plus |