Clone AT29263 Report

Search the DGRC for AT29263

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:292
Well:63
Vector:pOTB7
Associated Gene/TranscriptCG6675-RB
Protein status:AT29263.pep: gold
Sequenced Size:1473

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6675 2003-01-01 Sim4 clustering to Release 3
CG6675 2004-04-27 Blastp of sequenced clone
CG6675 2008-04-29 Release 5.5 accounting
CG6675 2008-08-15 Release 5.9 accounting
CG6675 2008-12-18 5.12 accounting

Clone Sequence Records

AT29263.complete Sequence

1473 bp (1473 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014668

> AT29263.complete
TGTCTCCGAACATAGTCGATCAAAACCCAGTATGCATCGCGCTATTAAAG
CATATAAAGCCACTTAGCCCGATCGAACAGATCCACAAAGTGCAAAAGCC
ATTTGGATGGAAAGCTTCTATAGCTGCAGCTGATTCAATAAGTTTACTAA
TAATGCGGACGCATCTTTTTGCGCTTTGCCTGTCTATGGCTACAATAGGC
ATACCCAAAGCTAATGGAGTCATGGACGATTACGATGCTGAGATGGGGGA
GTTCATGAATGCTCTACCGAACCTCGATGATACCCCCTATGGCTTAGGAC
AGCGATCAGATATCTCAACGGAACCGGAAGAGGATGATATTTTGGCAAGC
CTGGATGATGAGTATGAGGAGGCTAAGCATTGCGTCTGGAACACTTGTGA
CAAGGATCTCAGCGAATCGCGGGGAATCGGAAAGTTTCTGGACCTACCCT
TTATAAAGAAGATAGCAAGTAACCTGAATCCATTCGGCAGCAAGAAACTT
CGCATGCACTTCTATCTCTTTAAGAGGGAGTTCCCTGAGTGTGGCAGAGA
GGTGGATTTCTCAATCGAGCGCAAATGGAGGCATTGTGGCTTTAATGCTT
CTCTGCCCACACGACTGATGATACACGGTTGGATGAGCCAGTCGCGTGGC
TCTTTCAATCGGGATGTGAAGAATGCATACCTAAAAAAAGGGGAGTACAA
TGTGATCGTTGTCGATTGGAGCGCAAGCTCAGCCAACATAAACTACTTTT
CGGTGGTAAAGCTTATAGAGACCTTTGGAGCTGAGTTGGCCCAATTTATA
AGGAACCTCAATCGTCAGTTTGGAGCTGACTTCGACAGCATGTATCTTAT
TGGTCACTCCTTGGGAGCTCAGATCGCTGGTTCTGCCGGGAAACGTTTGA
AACCGGTTAAAGTAAATACAATATTTGCTTTGGATCCCGCAGGTCCAAAG
TTCCGTCATCGCGGAACTGAATTTCGGATAGATCCCAGCGATGCAAAGTA
TGTGGAGTCCATGCATACGAGTGCTAACTTTGGGTTTCGTCGGCCTACAG
GCAGTGCCACCTTTTATCCAAACTACGGGGCCTATCAGCATAGCTGCTAC
TACCTAGGTTGCTCCCATATTCGATCATATCAGATGTTCGCCGAGTCCAT
CAATTCGCCTTTGGGATTCTGGGGGACCCCTTGCATCCGAGACAATGGAA
GGTGGCAGTGCGATTATAGCCAGCGACAGTCCATCCAGATGGCCGGTGAG
CCTTCGATTCATAAAGAAGGCATATTCTACGTGAAGACCTCCAGCAGTGA
TCCATTCGCCCTTGGAAAGCAATAAGGCTGTAACAGATTATCTTTTTAAG
AGAAGCTTTGTTGTACGTGCATCTTTAATTCACTAGTCCTTTAGTAAAAG
AGTATATTGCAAAAGATTTAACATTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

AT29263.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6675-RB 1536 CG6675-RB 33..1458 1..1426 7100 99.8 Plus
CG6675.a 1461 CG6675.a 212..1429 209..1426 6060 99.8 Plus
CG6675.a 1461 CG6675.a 16..213 1..198 990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22107751..22108979 197..1425 6100 99.8 Plus
chr2L 23010047 chr2L 22107494..22107692 1..199 995 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:02:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22109221..22110450 197..1426 6120 99.8 Plus
2L 23513712 2L 22108964..22109162 1..199 995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22109221..22110450 197..1426 6120 99.8 Plus
2L 23513712 2L 22108964..22109162 1..199 995 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:29:06 has no hits.

AT29263.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:30:19 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22107494..22107691 1..198 100 -> Plus
chr2L 22107753..22108979 199..1425 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:29:25 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1173 153..1325 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:51 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1173 153..1325 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:49:28 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1173 153..1325 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:40 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1173 153..1325 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:49 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1173 153..1325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:44:15 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1425 1..1425 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:51 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1425 1..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:49:28 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1425 1..1425 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:40 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1425 1..1425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:49 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
CG6675-RB 1..1425 1..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:19 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22108964..22109161 1..198 100 -> Plus
2L 22109223..22110449 199..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:19 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22108964..22109161 1..198 100 -> Plus
2L 22109223..22110449 199..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:19 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22108964..22109161 1..198 100 -> Plus
2L 22109223..22110449 199..1425 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:49:28 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22108964..22109161 1..198 100 -> Plus
arm_2L 22109223..22110449 199..1425 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:00 Download gff for AT29263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22109223..22110449 199..1425 99   Plus
2L 22108964..22109161 1..198 100 -> Plus

AT29263.hyp Sequence

Translation from 2 to 1324

> AT29263.hyp
SPNIVDQNPVCIALLKHIKPLSPIEQIHKVQKPFGWKASIAAADSISLLI
MRTHLFALCLSMATIGIPKANGVMDDYDAEMGEFMNALPNLDDTPYGLGQ
RSDISTEPEEDDILASLDDEYEEAKHCVWNTCDKDLSESRGIGKFLDLPF
IKKIASNLNPFGSKKLRMHFYLFKREFPECGREVDFSIERKWRHCGFNAS
LPTRLMIHGWMSQSRGSFNRDVKNAYLKKGEYNVIVVDWSASSANINYFS
VVKLIETFGAELAQFIRNLNRQFGADFDSMYLIGHSLGAQIAGSAGKRLK
PVKVNTIFALDPAGPKFRHRGTEFRIDPSDAKYVESMHTSANFGFRRPTG
SATFYPNYGAYQHSCYYLGCSHIRSYQMFAESINSPLGFWGTPCIRDNGR
WQCDYSQRQSIQMAGEPSIHKEGIFYVKTSSSDPFALGKQ*

AT29263.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6675-PB 390 CG6675-PB 1..390 51..440 2100 100 Plus
CG6675-PC 386 CG6675-PC 1..386 51..440 2063 99 Plus
CG4267-PB 374 CG4267-PB 37..354 131..438 821 51.7 Plus
CG4267-PA 374 CG4267-PA 37..354 131..438 821 51.7 Plus
CG7367-PD 358 CG7367-PD 104..351 197..438 410 37.7 Plus

AT29263.pep Sequence

Translation from 152 to 1324

> AT29263.pep
MRTHLFALCLSMATIGIPKANGVMDDYDAEMGEFMNALPNLDDTPYGLGQ
RSDISTEPEEDDILASLDDEYEEAKHCVWNTCDKDLSESRGIGKFLDLPF
IKKIASNLNPFGSKKLRMHFYLFKREFPECGREVDFSIERKWRHCGFNAS
LPTRLMIHGWMSQSRGSFNRDVKNAYLKKGEYNVIVVDWSASSANINYFS
VVKLIETFGAELAQFIRNLNRQFGADFDSMYLIGHSLGAQIAGSAGKRLK
PVKVNTIFALDPAGPKFRHRGTEFRIDPSDAKYVESMHTSANFGFRRPTG
SATFYPNYGAYQHSCYYLGCSHIRSYQMFAESINSPLGFWGTPCIRDNGR
WQCDYSQRQSIQMAGEPSIHKEGIFYVKTSSSDPFALGKQ*

AT29263.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23710-PA 392 GF23710-PA 1..389 1..389 1752 81.7 Plus
Dana\GF14612-PA 377 GF14612-PA 40..359 82..390 778 48.6 Plus
Dana\GF22959-PA 341 GF22959-PA 62..339 112..387 410 35.3 Plus
Dana\GF16154-PA 378 GF16154-PA 96..353 147..388 400 35.3 Plus
Dana\GF22960-PA 339 GF22960-PA 65..336 118..386 389 35.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21467-PA 392 GG21467-PA 1..392 1..390 1883 88.8 Plus
Dere\GG24841-PA 374 GG24841-PA 37..356 81..390 824 51.4 Plus
Dere\GG16977-PA 387 GG16977-PA 96..360 143..385 422 36.2 Plus
Dere\GG12149-PA 341 GG12149-PA 62..339 112..387 405 34.6 Plus
Dere\GG11519-PA 341 GG11519-PA 62..339 112..387 404 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11279-PA 387 GH11279-PA 5..387 6..389 1417 67.5 Plus
Dgri\GH13087-PA 333 GH13087-PA 4..315 106..390 768 50.3 Plus
Dgri\GH18958-PA 338 GH18958-PA 36..335 91..386 421 34.2 Plus
Dgri\GH18960-PA 345 GH18960-PA 67..336 120..386 405 36.7 Plus
Dgri\GH18956-PA 341 GH18956-PA 68..338 118..386 401 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6675-PB 390 CG6675-PB 1..390 1..390 2100 100 Plus
CG6675-PC 386 CG6675-PC 1..386 1..390 2063 99 Plus
CG4267-PB 374 CG4267-PB 37..354 81..388 821 51.7 Plus
CG4267-PA 374 CG4267-PA 37..354 81..388 821 51.7 Plus
CG7367-PD 358 CG7367-PD 104..351 147..388 410 37.7 Plus
CG7367-PB 358 CG7367-PB 104..351 147..388 410 37.7 Plus
CG7367-PC 389 CG7367-PC 135..382 147..388 410 37.7 Plus
sxe2-PB 387 CG4979-PB 96..360 143..385 406 35.5 Plus
sxe2-PA 387 CG4979-PA 96..360 143..385 406 35.5 Plus
CG6271-PA 341 CG6271-PA 62..339 112..387 403 35.3 Plus
CG6277-PA 341 CG6277-PA 62..339 112..387 398 35 Plus
CG6283-PA 339 CG6283-PA 65..335 118..385 390 36 Plus
CG17192-PA 337 CG17192-PA 36..333 91..385 387 33.4 Plus
CG4582-PA 432 CG4582-PA 155..417 143..389 385 33.5 Plus
CG17191-PA 337 CG17191-PA 65..280 120..333 349 36.7 Plus
CG6296-PA 676 CG6296-PA 71..345 118..389 346 31.9 Plus
CG6472-PB 389 CG6472-PB 46..327 120..385 341 33.2 Plus
CG6295-PA 338 CG6295-PA 92..337 147..388 339 34 Plus
CG13282-PB 484 CG13282-PB 79..355 120..389 329 34.6 Plus
CG13282-PA 484 CG13282-PA 79..355 120..389 329 34.6 Plus
CG18641-PC 369 CG18641-PC 62..353 110..388 291 31.3 Plus
CG34447-PA 389 CG34447-PA 68..317 147..389 279 30.9 Plus
CG34447-PB 389 CG34447-PB 68..317 147..389 279 30.9 Plus
CG5966-PA 540 CG5966-PA 67..394 107..385 275 27.4 Plus
CG5966-PB 436 CG5966-PB 2..290 146..385 255 28.6 Plus
CG17292-PD 340 CG17292-PD 61..313 153..390 254 31.3 Plus
CG17292-PC 340 CG17292-PC 61..313 153..390 254 31.3 Plus
CG17292-PB 340 CG17292-PB 61..313 153..390 254 31.3 Plus
CG17292-PA 340 CG17292-PA 61..313 153..390 254 31.3 Plus
CG34448-PA 344 CG34448-PA 70..323 147..388 254 32 Plus
CG14034-PC 338 CG14034-PC 40..312 120..389 252 28.1 Plus
CG14034-PB 338 CG14034-PB 40..312 120..389 252 28.1 Plus
CG10357-PC 321 CG10357-PC 56..317 154..389 247 27.2 Plus
CG6847-PB 1000 CG6847-PB 186..409 146..344 246 30 Plus
CG6847-PA 1000 CG6847-PA 186..409 146..344 246 30 Plus
CG1986-PB 404 CG1986-PB 71..350 131..390 238 30.8 Plus
CG1986-PA 404 CG1986-PA 71..350 131..390 238 30.8 Plus
CG18258-PA 468 CG18258-PA 193..447 139..385 233 29.7 Plus
CG5665-PB 376 CG5665-PB 108..356 142..385 221 28.5 Plus
CG5665-PC 395 CG5665-PC 108..375 142..385 215 27.6 Plus
CG5162-PB 411 CG5162-PB 117..371 137..387 206 27.7 Plus
CG5162-PA 411 CG5162-PA 117..371 137..387 206 27.7 Plus
CG10116-PA 289 CG10116-PA 24..282 120..388 200 26.1 Plus
CG6431-PB 346 CG6431-PB 84..286 146..344 172 30.4 Plus
CG6431-PC 351 CG6431-PC 89..291 146..344 172 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24410-PA 388 GI24410-PA 1..388 1..389 1457 69.6 Plus
Dmoj\GI14146-PA 382 GI14146-PA 36..362 82..388 813 48.8 Plus
Dmoj\GI22654-PA 432 GI22654-PA 139..405 143..385 427 37.7 Plus
Dmoj\GI21891-PA 340 GI21891-PA 66..335 118..384 423 36.2 Plus
Dmoj\GI23284-PA 341 GI23284-PA 68..338 118..386 413 35.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26109-PA 380 GL26109-PA 11..380 21..390 1684 82.7 Plus
Dper\GL18712-PA 380 GL18712-PA 44..363 82..390 782 48.9 Plus
Dper\GL23624-PA 341 GL23624-PA 58..339 108..387 417 35.8 Plus
Dper\GL23622-PA 341 GL23622-PA 58..339 108..387 398 34.7 Plus
Dper\GL12219-PA 392 GL12219-PA 80..364 124..385 397 34 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19771-PA 380 GA19771-PA 11..380 21..390 1684 82.7 Plus
Dpse\GA18069-PA 380 GA18069-PA 44..363 82..390 789 49.2 Plus
Dpse\GA19482-PA 341 GA19482-PA 58..339 108..387 418 35.8 Plus
Dpse\GA26666-PA 341 GA26666-PA 58..339 108..387 398 34.7 Plus
Dpse\GA26669-PA 339 GA26669-PA 65..336 118..386 397 35.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16157-PA 392 GM16157-PA 1..392 1..390 2032 95.7 Plus
Dsec\GM18324-PA 336 GM18324-PA 37..316 81..388 700 46.6 Plus
Dsec\GM10142-PA 341 GM10142-PA 33..339 86..387 426 33.7 Plus
Dsec\GM24283-PA 387 GM24283-PA 65..360 110..385 406 33.7 Plus
Dsec\GM10143-PA 339 GM10143-PA 65..336 118..386 393 35.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24346-PA 392 GD24346-PA 1..392 1..390 2023 95.4 Plus
Dsim\GD23140-PA 374 GD23140-PA 37..356 81..390 824 51.4 Plus
Dsim\GD18101-PA 341 GD18101-PA 58..339 108..387 424 35.5 Plus
Dsim\GD18100-PA 341 GD18100-PA 62..339 112..387 418 35.3 Plus
Dsim\GD19073-PA 387 GD19073-PA 65..360 110..385 407 33.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16194-PA 386 GJ16194-PA 5..386 5..389 1484 71 Plus
Dvir\GJ17493-PA 375 GJ17493-PA 7..357 63..390 831 47.2 Plus
Dvir\GJ23382-PA 353 GJ23382-PA 66..328 147..387 454 35.6 Plus
Dvir\GJ24144-PA 338 GJ24144-PA 36..333 91..389 421 35.1 Plus
Dvir\GJ24145-PA 339 GJ24145-PA 67..336 120..386 419 37.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18697-PA 362 GK18697-PA 1..362 31..389 1479 74.6 Plus
Dwil\GK14991-PA 304 GK14991-PA 1..281 118..390 799 54.1 Plus
Dwil\GK13261-PA 338 GK13261-PA 29..314 118..386 426 34.5 Plus
Dwil\GK12042-PA 342 GK12042-PA 63..340 112..387 425 36 Plus
Dwil\GK12046-PA 340 GK12046-PA 66..337 118..386 402 35.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12969-PA 392 GE12969-PA 1..392 1..390 1910 90.3 Plus
Dyak\GE18062-PA 375 GE18062-PA 38..357 81..390 828 51.7 Plus
Dyak\GE10594-PA 341 GE10594-PA 62..339 112..387 419 34.9 Plus
Dyak\GE24368-PA 387 GE24368-PA 65..363 110..388 410 34.4 Plus
Dyak\GE10596-PA 339 GE10596-PA 65..336 118..386 399 36.2 Plus