Clone AT29456 Report

Search the DGRC for AT29456

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:294
Well:56
Vector:pOTB7
Associated Gene/TranscriptCG1814-RC
Protein status:AT29456.pep: gold
Sequenced Size:1688

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1814-RC 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT29456.complete Sequence

1688 bp assembled on 2009-08-03

GenBank Submission: BT089025.1

> AT29456.complete
GGAGTCCGGAATCAAGGCCTCACTCCGAACGGGGGAGCGAGACAACAGCT
TTGGCCCCGCCGTCGCAGCTGCTCCACAACAAATTACACACGCGCCCTCT
CGCTCGCACACGTTGGCGAAACGTTACATGGCCAAGAAGCTGCCCTCCGA
TGTGCATCCAGATGCGGTCTTCGCCTGCAACGAGCTCGATCTCAGCGAGG
TGCAGGTGTACGGATTCGATTACGACTACACGCTGGCCTGCTATAAGCCC
ATCCTGGAGGACCTGCTGTACAATCTGGCTCGCGAGATGCTGGTGAAGAG
GTTCCGCTACCCGGAGGACATCCTCCAGCTGGAGTACGAACCGAACTTTG
CGGTACGCGGCCTGCACTACGACGTGGAAAAGGGGCTGCTGGTGAAACTG
GACAGTTTCCTGCAGCTACAGCTGGGCTCGGTATACAGGGGACGTACCAA
AGTGGAGGCGGATGAGGTGCTGAAGCTCTACCACAACCGCCTGCTGCCTA
TTGCCTACGTGGAGGGGCCGAACAATAGCTACAGGCATAACACCAACTCC
AAAATGGTGCAATTGGCCGACCTGTTTTCTGTACCTGAAATGTGCCTGCT
GTGCAATGTAATCGAATATTTTGAACGCAATCGAATCGACTACAATCCAG
AGATTGTTTTCCATGACACCAGGACCGCCATGGGCTCCTGCCATCCCATT
ATGCACGGCAAGGTGATGCGGAACACTGAGAAGTACATAGAACGAAACCC
GAAGCTGGTCAAGTTCTTCGAGAAGCTGCAGCAGGCGGGCAAGAATCTCT
TTCTAGTCACCAATAGCCCGTACTCGTTTGTAAACTGTGGCATGTCCTTT
CTGGTCGGCGCCAACTGGCGTGATTTCTTCGATGTGGTCATCGTGCAGGC
CCGCAAACCAAAGTTCTTTACGGATGAATCTCGACCAATAAGGCTATTCG
ACGAGCGAACGCAGTCACACCTATGGGATCGGGTATTCAAGCTGGAGAAG
GGAAAAATCTACTACGAGGGTTCGGTGAGACAGCTTCAAGAGCTGAAGGG
CTGGCGTGGTCACTCTGTGCTCTATTTCGGAGATCATCCGTACAGCGACC
TAGCAGATGTTACTCTGAAGCACAGCTGGAGGACAGGAGCCATTATTAGC
GAACTGGCTCACGAAATTAAAACCCTCAATCGTAAGGACTTCAAGATGAG
CGCCAACTGGCTGCAAATGCTGACGCAGCTCATCGAGGACACCCAGGACG
ATGATAGCGAGGCAGCGCAGATCTGCCTAAAGGAGTGGATGGAGGAGCGG
GATCAGTTGCGCAACAAAACGAAGAACGTGTTCAACGAGCAGTTTGGCAG
CGTTTTCCGCACCTACCACAACCCCACTTACTTCTCAAGACGCCTCTTCC
GCTTTGCCGACATCTACACCAGCGACATAACCAACCTGCTCAAGTTCTCC
ACCACCCACACCTTTTATCCCCGACGGGGTGTAATGCCCCACGAATATGC
CTCCCACTTTATCTAGAGAATTTGTGGGGACGAATGCCCGTTAGGAAGCT
CAGATTAGTTGTAGGTAACAAGAAGTGCCAGTGTTTAATGCTTGTAGCTC
GAAACTAGCGAATTTAATGCGTGTATATCGTTATTTACATTATTGCTCAA
TAAAATCGTTGTAATAGTTCAAAAAAAAAAAAAAAAAA

AT29456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RC 1673 CG1814-RC 1..1672 1..1672 8360 100 Plus
CG1814-RA 2018 CG1814-RA 451..1996 132..1677 7715 99.9 Plus
CG1814-RB 1969 CG1814-RB 402..1947 132..1677 7715 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5467457..5467861 131..535 2025 100 Plus
chr2R 21145070 chr2R 5468980..5469339 1311..1670 1800 100 Plus
chr2R 21145070 chr2R 5467946..5468242 535..831 1485 100 Plus
chr2R 21145070 chr2R 5468313..5468500 832..1019 940 100 Plus
chr2R 21145070 chr2R 5468761..5468912 1160..1311 760 100 Plus
chr2R 21145070 chr2R 5468559..5468701 1017..1159 715 100 Plus
chr2R 21145070 chr2R 5464922..5465052 1..131 655 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:02:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9579962..9580366 131..535 2025 100 Plus
2R 25286936 2R 9581485..9581851 1311..1677 1820 99.7 Plus
2R 25286936 2R 9580451..9580747 535..831 1485 100 Plus
2R 25286936 2R 9580818..9581005 832..1019 940 100 Plus
2R 25286936 2R 9581266..9581417 1160..1311 760 100 Plus
2R 25286936 2R 9581064..9581206 1017..1159 715 100 Plus
2R 25286936 2R 9577427..9577557 1..131 655 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9581161..9581565 131..535 2025 100 Plus
2R 25260384 2R 9582684..9583050 1311..1677 1820 99.7 Plus
2R 25260384 2R 9581650..9581946 535..831 1485 100 Plus
2R 25260384 2R 9582017..9582204 832..1019 940 100 Plus
2R 25260384 2R 9582465..9582616 1160..1311 760 100 Plus
2R 25260384 2R 9582263..9582405 1017..1159 715 100 Plus
2R 25260384 2R 9578626..9578756 1..131 655 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:04:33 has no hits.

AT29456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:05:15 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5464922..5465052 1..131 100 -> Plus
chr2R 5467458..5467861 132..535 100 -> Plus
chr2R 5467947..5468242 536..831 100 -> Plus
chr2R 5468313..5468499 832..1018 100 -> Plus
chr2R 5468561..5468701 1019..1159 100 -> Plus
chr2R 5468761..5468912 1160..1311 100 -> Plus
chr2R 5468981..5469339 1312..1670 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:41 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1389 128..1516 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:54:10 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1389 128..1516 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:01:34 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1389 128..1516 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:07 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1389 128..1516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-03 12:59:02 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:54:10 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:01:34 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:07 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 1..1670 1..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:15 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9577427..9577557 1..131 100 -> Plus
2R 9579963..9580366 132..535 100 -> Plus
2R 9580452..9580747 536..831 100 -> Plus
2R 9580818..9581004 832..1018 100 -> Plus
2R 9581066..9581206 1019..1159 100 -> Plus
2R 9581266..9581417 1160..1311 100 -> Plus
2R 9581486..9581844 1312..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:15 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9577427..9577557 1..131 100 -> Plus
2R 9579963..9580366 132..535 100 -> Plus
2R 9580452..9580747 536..831 100 -> Plus
2R 9580818..9581004 832..1018 100 -> Plus
2R 9581066..9581206 1019..1159 100 -> Plus
2R 9581266..9581417 1160..1311 100 -> Plus
2R 9581486..9581844 1312..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:05:15 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9577427..9577557 1..131 100 -> Plus
2R 9579963..9580366 132..535 100 -> Plus
2R 9580452..9580747 536..831 100 -> Plus
2R 9580818..9581004 832..1018 100 -> Plus
2R 9581066..9581206 1019..1159 100 -> Plus
2R 9581266..9581417 1160..1311 100 -> Plus
2R 9581486..9581844 1312..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:01:34 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5468323..5468509 832..1018 100 -> Plus
arm_2R 5468571..5468711 1019..1159 100 -> Plus
arm_2R 5468771..5468922 1160..1311 100 -> Plus
arm_2R 5468991..5469349 1312..1670 100   Plus
arm_2R 5464932..5465062 1..131 100 -> Plus
arm_2R 5467468..5467871 132..535 100 -> Plus
arm_2R 5467957..5468252 536..831 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:44:49 Download gff for AT29456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9582465..9582616 1160..1311 100 -> Plus
2R 9581162..9581565 132..535 100 -> Plus
2R 9581651..9581946 536..831 100 -> Plus
2R 9582017..9582203 832..1018 100 -> Plus
2R 9582265..9582405 1019..1159 100 -> Plus
2R 9582685..9583043 1312..1670 100   Plus
2R 9578626..9578756 1..131 100 -> Plus

AT29456.hyp Sequence

Translation from 1 to 1515

> AT29456.hyp
ESGIKASLRTGERDNSFGPAVAAAPQQITHAPSRSHTLAKRYMAKKLPSD
VHPDAVFACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNLAREMLVKR
FRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVYRGRTK
VEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVPEMCLL
CNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKYIERNP
KLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDVVIVQA
RKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQLQELKG
WRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRKDFKMS
ANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFNEQFGS
VFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVMPHEYA
SHFI*

AT29456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PA 548 CG1814-PA 56..548 18..504 2477 94.9 Plus
CG1814-PC 462 CG1814-PC 1..462 43..504 2465 100 Plus
CG1814-PB 409 CG1814-PB 1..409 96..504 2182 100 Plus
CG32549-PD 581 CG32549-PD 29..481 56..498 491 29.8 Plus
CG32549-PF 612 CG32549-PF 60..512 56..498 491 29.8 Plus

AT29456.pep Sequence

Translation from 1 to 1515

> AT29456.pep
ESGIKASLRTGERDNSFGPAVAAAPQQITHAPSRSHTLAKRYMAKKLPSD
VHPDAVFACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNLAREMLVKR
FRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVYRGRTK
VEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVPEMCLL
CNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKYIERNP
KLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDVVIVQA
RKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQLQELKG
WRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRKDFKMS
ANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFNEQFGS
VFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVMPHEYA
SHFI*

AT29456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21341-PA 558 GF21341-PA 75..558 27..504 2438 92.6 Plus
Dana\GF22508-PA 378 GF22508-PA 4..360 23..376 397 30.1 Plus
Dana\GF10066-PA 536 GF10066-PA 94..454 41..388 238 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24086-PA 547 GG24086-PA 55..547 18..504 2522 94.3 Plus
Dere\GG18126-PA 713 GG18126-PA 137..614 23..498 492 29 Plus
Dere\GG14610-PA 534 GG14610-PA 78..452 26..388 272 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19932-PA 539 GH19932-PA 37..539 8..504 2374 86.5 Plus
Dgri\GH12351-PA 611 GH12351-PA 63..515 56..498 491 29.4 Plus
Dgri\GH16005-PA 445 GH16005-PA 7..354 61..385 270 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PA 548 CG1814-PA 56..548 18..504 2477 94.9 Plus
CG1814-PC 462 CG1814-PC 1..462 43..504 2465 100 Plus
CG1814-PB 409 CG1814-PB 1..409 96..504 2182 100 Plus
CG32549-PD 581 CG32549-PD 29..481 56..498 491 29.8 Plus
CG32549-PF 612 CG32549-PF 60..512 56..498 491 29.8 Plus
CG32549-PB 612 CG32549-PB 60..512 56..498 491 29.8 Plus
CG32549-PE 630 CG32549-PE 78..530 56..498 491 29.8 Plus
CG32549-PH 709 CG32549-PH 157..609 56..498 491 29.8 Plus
CG32549-PG 709 CG32549-PG 157..609 56..498 491 29.8 Plus
CG2277-PB 534 CG2277-PB 66..452 20..388 273 25.2 Plus
CG2277-PA 534 CG2277-PA 66..452 20..388 273 25.2 Plus
CG2277-PC 435 CG2277-PC 7..353 61..388 267 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19889-PA 537 GI19889-PA 73..537 40..504 2400 94 Plus
Dmoj\GI15598-PA 639 GI15598-PA 77..529 56..498 501 29.8 Plus
Dmoj\GI12272-PA 444 GI12272-PA 5..367 59..401 249 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17171-PA 499 GL17171-PA 39..499 44..504 2407 95.9 Plus
Dper\GL27036-PA 510 GL27036-PA 31..413 143..498 338 26.6 Plus
Dper\GL16077-PA 387 GL16077-PA 41..301 154..390 163 23.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25020-PB 551 GA25020-PB 60..551 15..504 2441 91.1 Plus
Dpse\GA25020-PC 409 GA25020-PC 1..409 96..504 2139 95.8 Plus
Dpse\GA22323-PA 576 GA22323-PA 27..479 56..498 499 29.6 Plus
Dpse\GA15339-PA 445 GA15339-PA 5..359 59..390 258 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21134-PA 481 GM21134-PA 56..481 18..437 2162 93.9 Plus
Dsec\GM22819-PA 637 GM22819-PA 86..538 56..498 493 29.6 Plus
Dsec\GM14224-PA 532 GM14224-PA 91..450 41..388 266 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10664-PA 548 GD10664-PA 56..548 18..504 2536 94.9 Plus
Dsim\GD15638-PA 403 GD15638-PA 4..349 55..389 417 31.4 Plus
Dsim\GD13486-PA 534 GD13486-PA 74..452 22..388 270 25.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15059-PA 538 GJ15059-PA 74..538 40..504 2408 93.5 Plus
Dvir\GJ15201-PA 634 GJ15201-PA 52..504 56..498 495 29.6 Plus
Dvir\GJ13208-PA 444 GJ13208-PA 5..367 59..401 230 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21823-PA 537 GK21823-PA 43..537 4..504 2376 87.8 Plus
Dwil\GK25265-PA 607 GK25265-PA 40..513 15..498 504 28.7 Plus
Dwil\GK20501-PA 430 GK20501-PA 5..428 59..501 260 24.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19287-PA 547 GE19287-PA 64..547 27..504 2506 95.2 Plus
Dyak\GE15532-PA 712 GE15532-PA 140..613 29..498 498 29.2 Plus
Dyak\GE20971-PA 535 GE20971-PA 79..453 26..388 266 26.2 Plus