BDGP Sequence Production Resources |
Search the DGRC for AT29882
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 298 |
Well: | 82 |
Vector: | pOTB7 |
Associated Gene/Transcript | D1-RA |
Protein status: | AT29882.pep: gold |
Preliminary Size: | 1814 |
Sequenced Size: | 1469 |
Gene | Date | Evidence |
---|---|---|
CG9745 | 2002-09-18 | Blastp of sequenced clone |
CG9745 | 2003-01-01 | Sim4 clustering to Release 3 |
D1 | 2008-04-29 | Release 5.5 accounting |
D1 | 2008-08-15 | Release 5.9 accounting |
D1 | 2008-12-18 | 5.12 accounting |
1469 bp (1469 high quality bases) assembled on 2002-09-18
GenBank Submission: BT001362
> AT29882.complete GTCACTTCAAACTTGTTTAACTTTTGGACATATGGATAGCTTAACTTGGT TGTTCACGCAAGAAGGAAGTTCAAAAAATAATTTTTGGTTATTGCTTTAG TTCAAGTTTTTTATAAATTTGTTTCTTTTGATATTCCTAAACTCTTGATT TTCGGCAAACAAAAAGGTGAAGAAGAAGAGCGGAGCCAAGCGAAAAGAGT GAGCGTGTGTTCGTGAGAGAGAGCATTTGTGCGCGTGTGTGTGTGAGGGG ACGCGAAGAAACAAGGATTTTTTTTATTCGCTTGCTAATTGAATCCCGTA CAGAGAAATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGACCGTCAAAGG CATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCAATCTCGCCA GGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTCCAGTGGCGG TGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCCAAAATGACG AAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGATGGCTCCGGC GCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGGCAGGGGACG ACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATTCGGTGAAGA CGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAGAAGCACCAG CCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGACGACGGCAA CAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGGCTGGATCCG TCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGACCCAAGAAG CGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCCCAAGAAACG CGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTACTGGCTACG TACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCTGCACCCGTC GAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAACTCCGGGGA GGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGAAGAAACGTG GACGTCCCTCTCTTGCCGCTGGCAAGGTGTCCAAAGAGGAAACAACAAAG CCCCGTAGTCGCCCAGCGAAAAATATTGATGACGATGCAGATGATGCTGA TTCCGCCGATCAGGGCCAACACAACTCCAAGAAGGAGTCGAACGACGAGG ACCGTGCCGTGGATGGGACACCAACCAAAGGAGATGGCCTCAAATGGAAC TCCGATGGCGAAAATGATGCCAACGACGGTTATGTTTCGGATAACTACAA CGATTCCGAATCGGTAGCTGCCTAAAACATACAATTTATAAACATTTCCA CACACCCCTCCCCAAAAATCAACACAAAAAAAAAAGAATGTTGTAAAAGC AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
D1-RC | 1845 | D1-RC | 30..1492 | 1..1463 | 7315 | 100 | Plus |
D1.a | 2095 | D1.a | 415..1734 | 144..1463 | 6600 | 100 | Plus |
D1-RA | 1787 | D1-RA | 107..1426 | 144..1463 | 6600 | 100 | Plus |
D1.a | 2095 | D1.a | 1..104 | 40..143 | 520 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5064238..5064967 | 1450..721 | 3650 | 100 | Minus |
chr3R | 27901430 | chr3R | 5065284..5065862 | 722..144 | 2895 | 100 | Minus |
chr3R | 27901430 | chr3R | 5066306..5066448 | 143..1 | 715 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8979262..8980004 | 1463..721 | 3715 | 100 | Minus |
3R | 31820162 | 3R | 8980321..8980899 | 722..144 | 2895 | 100 | Minus |
3R | 31820162 | 3R | 8981343..8981485 | 143..1 | 715 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5064273..5064965 | 723..1415 | 99 | <- | Minus |
chr3R | 5065284..5065862 | 144..722 | 100 | <- | Minus |
chr3R | 5066306..5066448 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RB | 1..1068 | 308..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RD | 1..1068 | 308..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1068 | 308..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RB | 1..1068 | 308..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1068 | 308..1375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1450 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1450 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1450 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1450 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
D1-RC | 1..1450 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9238444..9239171 | 723..1450 | 100 | <- | Minus |
3R | 9239490..9240068 | 144..722 | 100 | <- | Minus |
3R | 9240512..9240654 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9238444..9239171 | 723..1450 | 100 | <- | Minus |
3R | 9239490..9240068 | 144..722 | 100 | <- | Minus |
3R | 9240512..9240654 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9238444..9239171 | 723..1450 | 100 | <- | Minus |
3R | 9239490..9240068 | 144..722 | 100 | <- | Minus |
3R | 9240512..9240654 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5064166..5064893 | 723..1450 | 100 | <- | Minus |
arm_3R | 5065212..5065790 | 144..722 | 100 | <- | Minus |
arm_3R | 5066234..5066376 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8979275..8980002 | 723..1450 | 100 | <- | Minus |
3R | 8980321..8980899 | 144..722 | 100 | <- | Minus |
3R | 8981343..8981485 | 1..143 | 100 | Minus |
Translation from 307 to 1374
> AT29882.hyp MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS ESVAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
D1-PD | 355 | CG9745-PD | 1..355 | 1..355 | 1865 | 100 | Plus |
D1-PA | 355 | CG9745-PA | 1..355 | 1..355 | 1865 | 100 | Plus |
D1-PC | 355 | CG9745-PC | 1..355 | 1..355 | 1865 | 100 | Plus |
Dek-PD | 612 | CG5935-PD | 326..601 | 69..309 | 192 | 28.2 | Plus |
Dek-PE | 663 | CG5935-PE | 326..601 | 69..309 | 192 | 28.2 | Plus |
Translation from 307 to 1374
> AT29882.pep MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS ESVAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18425-PA | 353 | GF18425-PA | 1..353 | 1..355 | 553 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17392-PA | 360 | GG17392-PA | 1..360 | 1..355 | 960 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15235-PA | 417 | GH15235-PA | 1..284 | 1..273 | 359 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
D1-PD | 355 | CG9745-PD | 1..355 | 1..355 | 1865 | 100 | Plus |
D1-PA | 355 | CG9745-PA | 1..355 | 1..355 | 1865 | 100 | Plus |
D1-PC | 355 | CG9745-PC | 1..355 | 1..355 | 1865 | 100 | Plus |
Dek-PD | 612 | CG5935-PD | 326..601 | 69..309 | 192 | 28.2 | Plus |
Dek-PE | 663 | CG5935-PE | 326..601 | 69..309 | 192 | 28.2 | Plus |
Dek-PA | 663 | CG5935-PA | 326..601 | 69..309 | 192 | 28.2 | Plus |
Dek-PC | 667 | CG5935-PC | 330..605 | 69..309 | 192 | 28.2 | Plus |
Dek-PB | 669 | CG5935-PB | 332..607 | 69..309 | 192 | 28.2 | Plus |
ncm-PA | 1330 | CG12750-PA | 904..1250 | 20..319 | 154 | 21.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22500-PA | 415 | GI22500-PA | 1..318 | 1..300 | 376 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22342-PA | 350 | GL22342-PA | 1..275 | 1..288 | 309 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22003-PA | 350 | GA22003-PA | 1..275 | 1..288 | 309 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26279-PA | 353 | GM26279-PA | 1..353 | 1..354 | 1230 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10103-PA | 441 | GJ10103-PA | 1..310 | 1..286 | 328 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14031-PA | 411 | GK14031-PA | 1..300 | 1..274 | 357 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24795-PA | 354 | GE24795-PA | 1..354 | 1..355 | 1026 | 80.9 | Plus |