Clone AT29882 Report

Search the DGRC for AT29882

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:298
Well:82
Vector:pOTB7
Associated Gene/TranscriptD1-RA
Protein status:AT29882.pep: gold
Preliminary Size:1814
Sequenced Size:1469

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9745 2002-09-18 Blastp of sequenced clone
CG9745 2003-01-01 Sim4 clustering to Release 3
D1 2008-04-29 Release 5.5 accounting
D1 2008-08-15 Release 5.9 accounting
D1 2008-12-18 5.12 accounting

Clone Sequence Records

AT29882.complete Sequence

1469 bp (1469 high quality bases) assembled on 2002-09-18

GenBank Submission: BT001362

> AT29882.complete
GTCACTTCAAACTTGTTTAACTTTTGGACATATGGATAGCTTAACTTGGT
TGTTCACGCAAGAAGGAAGTTCAAAAAATAATTTTTGGTTATTGCTTTAG
TTCAAGTTTTTTATAAATTTGTTTCTTTTGATATTCCTAAACTCTTGATT
TTCGGCAAACAAAAAGGTGAAGAAGAAGAGCGGAGCCAAGCGAAAAGAGT
GAGCGTGTGTTCGTGAGAGAGAGCATTTGTGCGCGTGTGTGTGTGAGGGG
ACGCGAAGAAACAAGGATTTTTTTTATTCGCTTGCTAATTGAATCCCGTA
CAGAGAAATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGACCGTCAAAGG
CATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCAATCTCGCCA
GGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTCCAGTGGCGG
TGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCCAAAATGACG
AAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGATGGCTCCGGC
GCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGGCAGGGGACG
ACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATTCGGTGAAGA
CGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAGAAGCACCAG
CCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGACGACGGCAA
CAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGGCTGGATCCG
TCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGACCCAAGAAG
CGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCCCAAGAAACG
CGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTACTGGCTACG
TACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCTGCACCCGTC
GAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAACTCCGGGGA
GGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGAAGAAACGTG
GACGTCCCTCTCTTGCCGCTGGCAAGGTGTCCAAAGAGGAAACAACAAAG
CCCCGTAGTCGCCCAGCGAAAAATATTGATGACGATGCAGATGATGCTGA
TTCCGCCGATCAGGGCCAACACAACTCCAAGAAGGAGTCGAACGACGAGG
ACCGTGCCGTGGATGGGACACCAACCAAAGGAGATGGCCTCAAATGGAAC
TCCGATGGCGAAAATGATGCCAACGACGGTTATGTTTCGGATAACTACAA
CGATTCCGAATCGGTAGCTGCCTAAAACATACAATTTATAAACATTTCCA
CACACCCCTCCCCAAAAATCAACACAAAAAAAAAAGAATGTTGTAAAAGC
AAAAAAAAAAAAAAAAAAA

AT29882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
D1-RC 1845 D1-RC 30..1492 1..1463 7315 100 Plus
D1.a 2095 D1.a 415..1734 144..1463 6600 100 Plus
D1-RA 1787 D1-RA 107..1426 144..1463 6600 100 Plus
D1.a 2095 D1.a 1..104 40..143 520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5064238..5064967 1450..721 3650 100 Minus
chr3R 27901430 chr3R 5065284..5065862 722..144 2895 100 Minus
chr3R 27901430 chr3R 5066306..5066448 143..1 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:02:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9238431..9239173 1463..721 3715 100 Minus
3R 32079331 3R 9239490..9240068 722..144 2895 100 Minus
3R 32079331 3R 9240512..9240654 143..1 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8979262..8980004 1463..721 3715 100 Minus
3R 31820162 3R 8980321..8980899 722..144 2895 100 Minus
3R 31820162 3R 8981343..8981485 143..1 715 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:54:03 has no hits.

AT29882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:54:45 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5064273..5064965 723..1415 99 <- Minus
chr3R 5065284..5065862 144..722 100 <- Minus
chr3R 5066306..5066448 1..143 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:30:02 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RB 1..1068 308..1375 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:55 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RD 1..1068 308..1375 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:38:55 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1068 308..1375 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:53 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RB 1..1068 308..1375 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:38:04 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1068 308..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:38:13 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1450 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:55 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1450 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:38:55 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1450 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:53 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1450 1..1450 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:04 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
D1-RC 1..1450 1..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:45 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9238444..9239171 723..1450 100 <- Minus
3R 9239490..9240068 144..722 100 <- Minus
3R 9240512..9240654 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:45 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9238444..9239171 723..1450 100 <- Minus
3R 9239490..9240068 144..722 100 <- Minus
3R 9240512..9240654 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:45 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9238444..9239171 723..1450 100 <- Minus
3R 9239490..9240068 144..722 100 <- Minus
3R 9240512..9240654 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:38:55 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5064166..5064893 723..1450 100 <- Minus
arm_3R 5065212..5065790 144..722 100 <- Minus
arm_3R 5066234..5066376 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:47 Download gff for AT29882.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8979275..8980002 723..1450 100 <- Minus
3R 8980321..8980899 144..722 100 <- Minus
3R 8981343..8981485 1..143 100   Minus

AT29882.hyp Sequence

Translation from 307 to 1374

> AT29882.hyp
MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG
QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK
SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS
IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR
PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE
HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA
DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS
ESVAA*

AT29882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
D1-PD 355 CG9745-PD 1..355 1..355 1865 100 Plus
D1-PA 355 CG9745-PA 1..355 1..355 1865 100 Plus
D1-PC 355 CG9745-PC 1..355 1..355 1865 100 Plus
Dek-PD 612 CG5935-PD 326..601 69..309 192 28.2 Plus
Dek-PE 663 CG5935-PE 326..601 69..309 192 28.2 Plus

AT29882.pep Sequence

Translation from 307 to 1374

> AT29882.pep
MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG
QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK
SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS
IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR
PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE
HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA
DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS
ESVAA*

AT29882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18425-PA 353 GF18425-PA 1..353 1..355 553 50.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17392-PA 360 GG17392-PA 1..360 1..355 960 75.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15235-PA 417 GH15235-PA 1..284 1..273 359 42.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
D1-PD 355 CG9745-PD 1..355 1..355 1865 100 Plus
D1-PA 355 CG9745-PA 1..355 1..355 1865 100 Plus
D1-PC 355 CG9745-PC 1..355 1..355 1865 100 Plus
Dek-PD 612 CG5935-PD 326..601 69..309 192 28.2 Plus
Dek-PE 663 CG5935-PE 326..601 69..309 192 28.2 Plus
Dek-PA 663 CG5935-PA 326..601 69..309 192 28.2 Plus
Dek-PC 667 CG5935-PC 330..605 69..309 192 28.2 Plus
Dek-PB 669 CG5935-PB 332..607 69..309 192 28.2 Plus
ncm-PA 1330 CG12750-PA 904..1250 20..319 154 21.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22500-PA 415 GI22500-PA 1..318 1..300 376 45.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22342-PA 350 GL22342-PA 1..275 1..288 309 47 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22003-PA 350 GA22003-PA 1..275 1..288 309 47 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26279-PA 353 GM26279-PA 1..353 1..354 1230 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10103-PA 441 GJ10103-PA 1..310 1..286 328 43.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14031-PA 411 GK14031-PA 1..300 1..274 357 46.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24795-PA 354 GE24795-PA 1..354 1..355 1026 80.9 Plus