BDGP Sequence Production Resources |
Search the DGRC for AT29936
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 299 |
Well: | 36 |
Vector: | pOTB7 |
Associated Gene/Transcript | pyx-RB |
Protein status: | AT29936.pep: gold |
Sequenced Size: | 1943 |
Gene | Date | Evidence |
---|---|---|
CG17142 | 2002-11-07 | Blastp of sequenced clone |
CG17142 | 2003-01-01 | Sim4 clustering to Release 3 |
pyx | 2008-04-29 | Release 5.5 accounting |
pyx | 2008-08-15 | Release 5.9 accounting |
pyx | 2008-12-18 | 5.12 accounting |
1943 bp (1943 high quality bases) assembled on 2002-11-07
GenBank Submission: BT001363
> AT29936.complete CATTCTTAGAGTGAAACCTAAACTAAAACTAAACTAAAATCTTAACAAAC ATGGAGCCTTCTTTGTAAAGTTTTACAAAAGCAGACAACTATGGATATAC ACCACTGCACATTGCAGCACTGAATGAATTCAGCAGTTGTGTGTACACGT TCATAGAACACGGGGCGGATATTACCGCCAGGACGGACGGGCGTGTATCG GCACTATCATTTATAGTAAGGCGCACTCCTGAGATTATACCCAAATTAAT GCAAAAGCTGGACTCTTCGATAAAGGCGAACGACCAGGAAATCGGCGACG TTGACTGTCAGATAAAGCTAGACTTCCGGCTTTTGGTACCCAGTTCCTCG ATGGATCGGGGAGAAACCGAGCTACTACTTTCCCTTATAGAAGTGGGACA GAAGCGCATTCTCATGCACCCGCTTTGCGAAACTTTCCTCTTTCTTAAGT GGCGTCGCATTCGGAAATTCTTCCTTATGAGCCTTGCGTATCATACGCTT TTCGTGATCCTTTTCACTTTCTATGTAATTTGGGTGTATGTCCGCTGCTG CAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTTACGTTTCAACTATTGGAT ATCTGGTGATCATACTAAACCTCATTCTGCTGGGGAAAGAGGTCTTTCAA ATGGCACACGGACTTCGTGGCTACGCAAAATATTGGGAGAACTGGCTGCA ATGGACCATTGGAACCGGTGTGCTCCTATGTGTAACACCGGAGACCGTGC GAACTGACGATTTAACGGCAGTGCCGGTGTGGCAACATCACGTGGCAGCT ATAGTGATATTGCTCGTCTGGCTGGAACTAATGATGTTGGTGGGACGATT CCCCATATTTGGCGTATATGTTCAAATGTTCACAAAGGTGGCCGTTAACT TTGCGAAATTCTTGCTTGCCTACATATGCCTGCTGGTGGCTTTTGGCCTC AGCTTTGCCGTGCTCTTCAATGATTATCCTGCCTTTGAGAACATCACATG GTCCTTTTTGAAGTCCATCACGATGATGTCTGGGGAACTGGAGTTTGAAG ACATATTCTATGGGGACTATGCCGTCAAATTCCCTGTCACCGCTCACATC ATATTTCTCTCCTTCGTGCTTCTTGTTACGGTAATTTTAACCAATCTCAT GGTGGGATTGGCCGTAAGCGACATACAAGGATTGCAAGTGAGCGCCACGC TCGATCGTCTCGTGCGCCAAGCGGAGCTGGTGTCACGCTTGGAAAGCCTA TTTTTCTCCCGCCTACTGCGAAGTGCGCCCACTAACCTCATTCAGCTGTG TAAGAGGAGTGCTCTTTTGCGCACGTCCCGGGACAAACTTCAGTTCACTA TACGGCCCAACGACCCCCGGGACAATCAGTTGCCTGAGGATATTAAGTTA AATGTCTATAAGCTAGTGGCTGAACGGCGCGACAGAAACCAGAGCCTCCG ACGGCGCCAGTTCGAAAACAACTACAACATTTTCAGCCGCAGTCTACAGC GTCAGCAGCAGCCGCTCCACACGGATTTCCTCAAGCCAGAACCTGCCACG GGGACCACAAAGAAGACTCCACAGAATTTATTTCACATGCACGAGCTTTT GCGCCCCCGATCCGCTACAAATGTGCCGCAGCAGTTCCGCCAGGAGGCGG AGGGAACAGTACAGATGAAGAATCAGGCTAATGTCCTAAGCGCAGTGCTC GCCGAGGTGCAGGCGATCAAGACGCAACTGGTGGACCTAGTGGCCAAGTT CGAGCGTTTCTCAGAAAACGCAACCCGCAAGCTGAACTACAGTACCGACG AGTTGTGCCGGCTGCGGCAGCAGGGTCAGTCTGTGGCCTCCAGCCACATC CGTCGCCACCGCTAAGTCCTACAGTGAATTAGTTATATTTATTTCAATAG TAATACACAATGATTAAAGCAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 218569..219601 | 1920..888 | 5165 | 100 | Minus |
chr3L | 24539361 | chr3L | 219668..220401 | 888..155 | 3670 | 100 | Minus |
chr3L | 24539361 | chr3L | 220596..220676 | 81..1 | 405 | 100 | Minus |
chr3L | 24539361 | chr3L | 220462..220537 | 156..81 | 365 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 218611..219646 | 1923..888 | 5180 | 100 | Minus |
3L | 28110227 | 3L | 219713..220446 | 888..155 | 3670 | 100 | Minus |
3L | 28110227 | 3L | 220641..220721 | 81..1 | 405 | 100 | Minus |
3L | 28110227 | 3L | 220507..220582 | 156..81 | 380 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 218611..219646 | 1923..888 | 5180 | 100 | Minus |
3L | 28103327 | 3L | 219713..220446 | 888..155 | 3670 | 100 | Minus |
3L | 28103327 | 3L | 220641..220721 | 81..1 | 405 | 100 | Minus |
3L | 28103327 | 3L | 220507..220582 | 156..81 | 380 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 218569..219600 | 889..1920 | 100 | <- | Minus |
chr3L | 219668..220399 | 157..888 | 100 | <- | Minus |
chr3L | 220462..220537 | 81..156 | 98 | <- | Minus |
chr3L | 220597..220676 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RA | 1079..2871 | 72..1865 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RA | 1079..2871 | 72..1865 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RA | 1079..2871 | 72..1865 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RA | 1079..2871 | 72..1865 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RA | 1079..2871 | 72..1865 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RB | 1..1920 | 1..1920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RB | 1..1920 | 1..1920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RB | 1..1920 | 1..1920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RB | 1..1920 | 1..1920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pyx-RB | 1..1920 | 1..1920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 218614..219645 | 889..1920 | 100 | <- | Minus |
3L | 219713..220444 | 157..888 | 100 | <- | Minus |
3L | 220507..220582 | 81..156 | 100 | <- | Minus |
3L | 220642..220721 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 218614..219645 | 889..1920 | 100 | <- | Minus |
3L | 219713..220444 | 157..888 | 100 | <- | Minus |
3L | 220507..220582 | 81..156 | 100 | <- | Minus |
3L | 220642..220721 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 218614..219645 | 889..1920 | 100 | <- | Minus |
3L | 219713..220444 | 157..888 | 100 | <- | Minus |
3L | 220507..220582 | 81..156 | 100 | <- | Minus |
3L | 220642..220721 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 218614..219645 | 889..1920 | 100 | <- | Minus |
arm_3L | 219713..220444 | 157..888 | 100 | <- | Minus |
arm_3L | 220507..220582 | 81..156 | 100 | <- | Minus |
arm_3L | 220642..220721 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 220642..220721 | 1..80 | 100 | Minus | |
3L | 218614..219645 | 889..1920 | 100 | <- | Minus |
3L | 219713..220444 | 157..888 | 100 | <- | Minus |
3L | 220507..220582 | 81..156 | 100 | <- | Minus |
Translation from 248 to 1864
> AT29936.pep MQKLDSSIKANDQEIGDVDCQIKLDFRLLVPSSSMDRGETELLLSLIEVG QKRILMHPLCETFLFLKWRRIRKFFLMSLAYHTLFVILFTFYVIWVYVRC CKKEELCVAPGYVSTIGYLVIILNLILLGKEVFQMAHGLRGYAKYWENWL QWTIGTGVLLCVTPETVRTDDLTAVPVWQHHVAAIVILLVWLELMMLVGR FPIFGVYVQMFTKVAVNFAKFLLAYICLLVAFGLSFAVLFNDYPAFENIT WSFLKSITMMSGELEFEDIFYGDYAVKFPVTAHIIFLSFVLLVTVILTNL MVGLAVSDIQGLQVSATLDRLVRQAELVSRLESLFFSRLLRSAPTNLIQL CKRSALLRTSRDKLQFTIRPNDPRDNQLPEDIKLNVYKLVAERRDRNQSL RRRQFENNYNIFSRSLQRQQQPLHTDFLKPEPATGTTKKTPQNLFHMHEL LRPRSATNVPQQFRQEAEGTVQMKNQANVLSAVLAEVQAIKTQLVDLVAK FERFSENATRKLNYSTDELCRLRQQGQSVASSHIRRHR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25054-PA | 955 | GF25054-PA | 419..954 | 1..538 | 2470 | 87.7 | Plus |
Dana\GF18178-PA | 987 | GF18178-PA | 476..901 | 2..409 | 570 | 32.2 | Plus |
Dana\GF10143-PA | 1233 | GF10143-PA | 758..1161 | 45..423 | 301 | 25.5 | Plus |
Dana\GF11530-PA | 923 | GF11530-PA | 418..779 | 2..343 | 269 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14677-PA | 956 | GG14677-PA | 419..956 | 1..538 | 2781 | 96.7 | Plus |
Dere\GG14263-PA | 986 | GG14263-PA | 476..901 | 2..409 | 566 | 32 | Plus |
Dere\GG15054-PA | 1254 | GG15054-PA | 779..1111 | 45..332 | 294 | 26.8 | Plus |
Dere\GG19878-PA | 919 | GG19878-PA | 416..815 | 2..379 | 219 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13730-PA | 955 | GH13730-PA | 418..955 | 1..538 | 2110 | 74.8 | Plus |
Dgri\GH18568-PA | 989 | GH18568-PA | 477..902 | 2..409 | 572 | 32.2 | Plus |
Dgri\GH16134-PA | 1255 | GH16134-PA | 779..1183 | 45..423 | 299 | 24.6 | Plus |
Dgri\GH21975-PA | 921 | GH21975-PA | 477..832 | 52..399 | 239 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pyx-PB | 538 | CG17142-PB | 1..538 | 1..538 | 2754 | 100 | Plus |
pyx-PA | 956 | CG17142-PA | 419..956 | 1..538 | 2754 | 100 | Plus |
wtrw-PD | 969 | CG31284-PD | 459..884 | 2..409 | 558 | 32 | Plus |
wtrw-PC | 986 | CG31284-PC | 476..901 | 2..409 | 558 | 32 | Plus |
wtrw-PB | 986 | CG31284-PB | 476..901 | 2..409 | 558 | 32 | Plus |
wtrw-PA | 986 | CG31284-PA | 476..901 | 2..409 | 558 | 32 | Plus |
TrpA1-PK | 1195 | CG5751-PK | 714..1123 | 39..423 | 315 | 23.6 | Plus |
TrpA1-PI | 1197 | CG5751-PI | 720..1125 | 43..423 | 315 | 24 | Plus |
TrpA1-PG | 1232 | CG5751-PG | 755..1160 | 43..423 | 315 | 24 | Plus |
TrpA1-PJ | 1196 | CG5751-PJ | 721..1124 | 45..423 | 314 | 23.9 | Plus |
TrpA1-PH | 1231 | CG5751-PH | 756..1159 | 45..423 | 314 | 23.9 | Plus |
pain-PC | 529 | CG15860-PC | 32..428 | 2..379 | 247 | 24.1 | Plus |
pain-PB | 629 | CG15860-PB | 132..528 | 2..379 | 247 | 24.1 | Plus |
pain-PA | 913 | CG15860-PA | 416..812 | 2..379 | 247 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23718-PA | 960 | GI23718-PA | 418..938 | 1..523 | 2160 | 77.3 | Plus |
Dmoj\GI24766-PA | 986 | GI24766-PA | 476..931 | 2..440 | 579 | 31.1 | Plus |
Dmoj\GI12404-PA | 1225 | GI12404-PA | 752..1155 | 45..423 | 305 | 25.2 | Plus |
Dmoj\GI19678-PA | 909 | GI19678-PA | 415..770 | 2..343 | 260 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16103-PA | 958 | GL16103-PA | 421..955 | 1..537 | 2235 | 79.2 | Plus |
Dper\GL12463-PA | 991 | GL12463-PA | 477..902 | 2..409 | 577 | 32.4 | Plus |
Dper\GL10275-PA | 475 | GL10275-PA | 5..403 | 50..423 | 285 | 23.9 | Plus |
Dper\GL10901-PA | 927 | GL10901-PA | 413..807 | 2..372 | 249 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14343-PA | 958 | GA14343-PA | 421..955 | 1..537 | 2234 | 79.2 | Plus |
Dpse\GA16147-PB | 943 | GA16147-PB | 429..854 | 2..409 | 577 | 32.4 | Plus |
Dpse\GA16147-PA | 991 | GA16147-PA | 477..902 | 2..409 | 577 | 32.4 | Plus |
Dpse\GA28660-PA | 1137 | GA28660-PA | 758..1090 | 45..332 | 282 | 25.3 | Plus |
Dpse\GA24531-PA | 927 | GA24531-PA | 413..807 | 2..372 | 249 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14293-PA | 956 | GM14293-PA | 419..956 | 1..538 | 2828 | 98.5 | Plus |
Dsec\GM10982-PA | 986 | GM10982-PA | 476..901 | 2..409 | 566 | 32 | Plus |
Dsec\GM24910-PA | 1274 | GM24910-PA | 778..1110 | 45..332 | 294 | 26.8 | Plus |
Dsec\GM11779-PA | 921 | GM11779-PA | 416..838 | 2..400 | 225 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13531-PA | 956 | GD13531-PA | 419..956 | 1..538 | 2822 | 98.1 | Plus |
Dsim\GD19956-PA | 986 | GD19956-PA | 476..901 | 2..409 | 566 | 32 | Plus |
Dsim\GD12958-PA | 1093 | GD12958-PA | 597..929 | 45..332 | 293 | 26.8 | Plus |
Dsim\GD24909-PA | 921 | GD24909-PA | 416..838 | 2..400 | 219 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20915-PA | 951 | GJ20915-PA | 418..951 | 1..538 | 2144 | 76 | Plus |
Dvir\GJ22553-PA | 987 | GJ22553-PA | 476..932 | 2..440 | 573 | 31.1 | Plus |
Dvir\GJ12294-PA | 1228 | GJ12294-PA | 753..1156 | 45..423 | 298 | 25.1 | Plus |
Dvir\GJ17169-PA | 856 | GJ17169-PA | 343..742 | 2..379 | 245 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11308-PA | 978 | GK11308-PA | 422..975 | 1..537 | 2345 | 79.9 | Plus |
Dwil\GK12029-PA | 987 | GK12029-PA | 476..924 | 2..432 | 569 | 31.2 | Plus |
Dwil\GK17464-PA | 1237 | GK17464-PA | 762..1165 | 45..423 | 296 | 24.7 | Plus |
Dwil\GK20733-PA | 922 | GK20733-PA | 407..764 | 2..343 | 244 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21038-PA | 956 | GE21038-PA | 419..956 | 1..538 | 2773 | 96.8 | Plus |
Dyak\GE24952-PA | 986 | GE24952-PA | 476..901 | 2..409 | 565 | 32 | Plus |
Dyak\GE21276-PA | 1238 | GE21276-PA | 740..1166 | 43..423 | 294 | 25.4 | Plus |
Dyak\GE11402-PA | 925 | GE11402-PA | 416..814 | 2..372 | 227 | 23.7 | Plus |
Translation from 248 to 1864
> AT29936.hyp MQKLDSSIKANDQEIGDVDCQIKLDFRLLVPSSSMDRGETELLLSLIEVG QKRILMHPLCETFLFLKWRRIRKFFLMSLAYHTLFVILFTFYVIWVYVRC CKKEELCVAPGYVSTIGYLVIILNLILLGKEVFQMAHGLRGYAKYWENWL QWTIGTGVLLCVTPETVRTDDLTAVPVWQHHVAAIVILLVWLELMMLVGR FPIFGVYVQMFTKVAVNFAKFLLAYICLLVAFGLSFAVLFNDYPAFENIT WSFLKSITMMSGELEFEDIFYGDYAVKFPVTAHIIFLSFVLLVTVILTNL MVGLAVSDIQGLQVSATLDRLVRQAELVSRLESLFFSRLLRSAPTNLIQL CKRSALLRTSRDKLQFTIRPNDPRDNQLPEDIKLNVYKLVAERRDRNQSL RRRQFENNYNIFSRSLQRQQQPLHTDFLKPEPATGTTKKTPQNLFHMHEL LRPRSATNVPQQFRQEAEGTVQMKNQANVLSAVLAEVQAIKTQLVDLVAK FERFSENATRKLNYSTDELCRLRQQGQSVASSHIRRHR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pyx-PB | 538 | CG17142-PB | 1..538 | 1..538 | 2754 | 100 | Plus |
pyx-PA | 956 | CG17142-PA | 419..956 | 1..538 | 2754 | 100 | Plus |
wtrw-PD | 969 | CG31284-PD | 459..884 | 2..409 | 558 | 32 | Plus |
wtrw-PC | 986 | CG31284-PC | 476..901 | 2..409 | 558 | 32 | Plus |
wtrw-PB | 986 | CG31284-PB | 476..901 | 2..409 | 558 | 32 | Plus |