Clone AT29936 Report

Search the DGRC for AT29936

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:299
Well:36
Vector:pOTB7
Associated Gene/Transcriptpyx-RB
Protein status:AT29936.pep: gold
Sequenced Size:1943

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17142 2002-11-07 Blastp of sequenced clone
CG17142 2003-01-01 Sim4 clustering to Release 3
pyx 2008-04-29 Release 5.5 accounting
pyx 2008-08-15 Release 5.9 accounting
pyx 2008-12-18 5.12 accounting

Clone Sequence Records

AT29936.complete Sequence

1943 bp (1943 high quality bases) assembled on 2002-11-07

GenBank Submission: BT001363

> AT29936.complete
CATTCTTAGAGTGAAACCTAAACTAAAACTAAACTAAAATCTTAACAAAC
ATGGAGCCTTCTTTGTAAAGTTTTACAAAAGCAGACAACTATGGATATAC
ACCACTGCACATTGCAGCACTGAATGAATTCAGCAGTTGTGTGTACACGT
TCATAGAACACGGGGCGGATATTACCGCCAGGACGGACGGGCGTGTATCG
GCACTATCATTTATAGTAAGGCGCACTCCTGAGATTATACCCAAATTAAT
GCAAAAGCTGGACTCTTCGATAAAGGCGAACGACCAGGAAATCGGCGACG
TTGACTGTCAGATAAAGCTAGACTTCCGGCTTTTGGTACCCAGTTCCTCG
ATGGATCGGGGAGAAACCGAGCTACTACTTTCCCTTATAGAAGTGGGACA
GAAGCGCATTCTCATGCACCCGCTTTGCGAAACTTTCCTCTTTCTTAAGT
GGCGTCGCATTCGGAAATTCTTCCTTATGAGCCTTGCGTATCATACGCTT
TTCGTGATCCTTTTCACTTTCTATGTAATTTGGGTGTATGTCCGCTGCTG
CAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTTACGTTTCAACTATTGGAT
ATCTGGTGATCATACTAAACCTCATTCTGCTGGGGAAAGAGGTCTTTCAA
ATGGCACACGGACTTCGTGGCTACGCAAAATATTGGGAGAACTGGCTGCA
ATGGACCATTGGAACCGGTGTGCTCCTATGTGTAACACCGGAGACCGTGC
GAACTGACGATTTAACGGCAGTGCCGGTGTGGCAACATCACGTGGCAGCT
ATAGTGATATTGCTCGTCTGGCTGGAACTAATGATGTTGGTGGGACGATT
CCCCATATTTGGCGTATATGTTCAAATGTTCACAAAGGTGGCCGTTAACT
TTGCGAAATTCTTGCTTGCCTACATATGCCTGCTGGTGGCTTTTGGCCTC
AGCTTTGCCGTGCTCTTCAATGATTATCCTGCCTTTGAGAACATCACATG
GTCCTTTTTGAAGTCCATCACGATGATGTCTGGGGAACTGGAGTTTGAAG
ACATATTCTATGGGGACTATGCCGTCAAATTCCCTGTCACCGCTCACATC
ATATTTCTCTCCTTCGTGCTTCTTGTTACGGTAATTTTAACCAATCTCAT
GGTGGGATTGGCCGTAAGCGACATACAAGGATTGCAAGTGAGCGCCACGC
TCGATCGTCTCGTGCGCCAAGCGGAGCTGGTGTCACGCTTGGAAAGCCTA
TTTTTCTCCCGCCTACTGCGAAGTGCGCCCACTAACCTCATTCAGCTGTG
TAAGAGGAGTGCTCTTTTGCGCACGTCCCGGGACAAACTTCAGTTCACTA
TACGGCCCAACGACCCCCGGGACAATCAGTTGCCTGAGGATATTAAGTTA
AATGTCTATAAGCTAGTGGCTGAACGGCGCGACAGAAACCAGAGCCTCCG
ACGGCGCCAGTTCGAAAACAACTACAACATTTTCAGCCGCAGTCTACAGC
GTCAGCAGCAGCCGCTCCACACGGATTTCCTCAAGCCAGAACCTGCCACG
GGGACCACAAAGAAGACTCCACAGAATTTATTTCACATGCACGAGCTTTT
GCGCCCCCGATCCGCTACAAATGTGCCGCAGCAGTTCCGCCAGGAGGCGG
AGGGAACAGTACAGATGAAGAATCAGGCTAATGTCCTAAGCGCAGTGCTC
GCCGAGGTGCAGGCGATCAAGACGCAACTGGTGGACCTAGTGGCCAAGTT
CGAGCGTTTCTCAGAAAACGCAACCCGCAAGCTGAACTACAGTACCGACG
AGTTGTGCCGGCTGCGGCAGCAGGGTCAGTCTGTGGCCTCCAGCCACATC
CGTCGCCACCGCTAAGTCCTACAGTGAATTAGTTATATTTATTTCAATAG
TAATACACAATGATTAAAGCAAAAAAAAAAAAAAAAAAAAAAA

AT29936.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
pyx-RB 2502 pyx-RB 1..1923 1..1923 9615 100 Plus
pyx-RA 4210 pyx-RA 1785..3627 81..1923 9215 100 Plus
pyx.a 4004 pyx.a 1579..3421 81..1923 9215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 218569..219601 1920..888 5165 100 Minus
chr3L 24539361 chr3L 219668..220401 888..155 3670 100 Minus
chr3L 24539361 chr3L 220596..220676 81..1 405 100 Minus
chr3L 24539361 chr3L 220462..220537 156..81 365 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:02:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 218611..219646 1923..888 5180 100 Minus
3L 28110227 3L 219713..220446 888..155 3670 100 Minus
3L 28110227 3L 220641..220721 81..1 405 100 Minus
3L 28110227 3L 220507..220582 156..81 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 218611..219646 1923..888 5180 100 Minus
3L 28103327 3L 219713..220446 888..155 3670 100 Minus
3L 28103327 3L 220641..220721 81..1 405 100 Minus
3L 28103327 3L 220507..220582 156..81 380 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:31:48 has no hits.

AT29936.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:32:32 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 218569..219600 889..1920 100 <- Minus
chr3L 219668..220399 157..888 100 <- Minus
chr3L 220462..220537 81..156 98 <- Minus
chr3L 220597..220676 1..80 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:30:05 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RA 1079..2871 72..1865 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:07:30 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RA 1079..2871 72..1865 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:51:55 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RA 1079..2871 72..1865 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:57:16 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RA 1079..2871 72..1865 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:49 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RA 1079..2871 72..1865 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:27:31 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RB 1..1920 1..1920 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:07:30 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RB 1..1920 1..1920 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:51:55 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RB 1..1920 1..1920 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:57:16 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RB 1..1920 1..1920 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:49 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
pyx-RB 1..1920 1..1920 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:32 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 218614..219645 889..1920 100 <- Minus
3L 219713..220444 157..888 100 <- Minus
3L 220507..220582 81..156 100 <- Minus
3L 220642..220721 1..80 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:32 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 218614..219645 889..1920 100 <- Minus
3L 219713..220444 157..888 100 <- Minus
3L 220507..220582 81..156 100 <- Minus
3L 220642..220721 1..80 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:32 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 218614..219645 889..1920 100 <- Minus
3L 219713..220444 157..888 100 <- Minus
3L 220507..220582 81..156 100 <- Minus
3L 220642..220721 1..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:51:55 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 218614..219645 889..1920 100 <- Minus
arm_3L 219713..220444 157..888 100 <- Minus
arm_3L 220507..220582 81..156 100 <- Minus
arm_3L 220642..220721 1..80 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:29:50 Download gff for AT29936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 220642..220721 1..80 100   Minus
3L 218614..219645 889..1920 100 <- Minus
3L 219713..220444 157..888 100 <- Minus
3L 220507..220582 81..156 100 <- Minus

AT29936.pep Sequence

Translation from 248 to 1864

> AT29936.pep
MQKLDSSIKANDQEIGDVDCQIKLDFRLLVPSSSMDRGETELLLSLIEVG
QKRILMHPLCETFLFLKWRRIRKFFLMSLAYHTLFVILFTFYVIWVYVRC
CKKEELCVAPGYVSTIGYLVIILNLILLGKEVFQMAHGLRGYAKYWENWL
QWTIGTGVLLCVTPETVRTDDLTAVPVWQHHVAAIVILLVWLELMMLVGR
FPIFGVYVQMFTKVAVNFAKFLLAYICLLVAFGLSFAVLFNDYPAFENIT
WSFLKSITMMSGELEFEDIFYGDYAVKFPVTAHIIFLSFVLLVTVILTNL
MVGLAVSDIQGLQVSATLDRLVRQAELVSRLESLFFSRLLRSAPTNLIQL
CKRSALLRTSRDKLQFTIRPNDPRDNQLPEDIKLNVYKLVAERRDRNQSL
RRRQFENNYNIFSRSLQRQQQPLHTDFLKPEPATGTTKKTPQNLFHMHEL
LRPRSATNVPQQFRQEAEGTVQMKNQANVLSAVLAEVQAIKTQLVDLVAK
FERFSENATRKLNYSTDELCRLRQQGQSVASSHIRRHR*

AT29936.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25054-PA 955 GF25054-PA 419..954 1..538 2470 87.7 Plus
Dana\GF18178-PA 987 GF18178-PA 476..901 2..409 570 32.2 Plus
Dana\GF10143-PA 1233 GF10143-PA 758..1161 45..423 301 25.5 Plus
Dana\GF11530-PA 923 GF11530-PA 418..779 2..343 269 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14677-PA 956 GG14677-PA 419..956 1..538 2781 96.7 Plus
Dere\GG14263-PA 986 GG14263-PA 476..901 2..409 566 32 Plus
Dere\GG15054-PA 1254 GG15054-PA 779..1111 45..332 294 26.8 Plus
Dere\GG19878-PA 919 GG19878-PA 416..815 2..379 219 23 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13730-PA 955 GH13730-PA 418..955 1..538 2110 74.8 Plus
Dgri\GH18568-PA 989 GH18568-PA 477..902 2..409 572 32.2 Plus
Dgri\GH16134-PA 1255 GH16134-PA 779..1183 45..423 299 24.6 Plus
Dgri\GH21975-PA 921 GH21975-PA 477..832 52..399 239 24.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
pyx-PB 538 CG17142-PB 1..538 1..538 2754 100 Plus
pyx-PA 956 CG17142-PA 419..956 1..538 2754 100 Plus
wtrw-PD 969 CG31284-PD 459..884 2..409 558 32 Plus
wtrw-PC 986 CG31284-PC 476..901 2..409 558 32 Plus
wtrw-PB 986 CG31284-PB 476..901 2..409 558 32 Plus
wtrw-PA 986 CG31284-PA 476..901 2..409 558 32 Plus
TrpA1-PK 1195 CG5751-PK 714..1123 39..423 315 23.6 Plus
TrpA1-PI 1197 CG5751-PI 720..1125 43..423 315 24 Plus
TrpA1-PG 1232 CG5751-PG 755..1160 43..423 315 24 Plus
TrpA1-PJ 1196 CG5751-PJ 721..1124 45..423 314 23.9 Plus
TrpA1-PH 1231 CG5751-PH 756..1159 45..423 314 23.9 Plus
pain-PC 529 CG15860-PC 32..428 2..379 247 24.1 Plus
pain-PB 629 CG15860-PB 132..528 2..379 247 24.1 Plus
pain-PA 913 CG15860-PA 416..812 2..379 247 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23718-PA 960 GI23718-PA 418..938 1..523 2160 77.3 Plus
Dmoj\GI24766-PA 986 GI24766-PA 476..931 2..440 579 31.1 Plus
Dmoj\GI12404-PA 1225 GI12404-PA 752..1155 45..423 305 25.2 Plus
Dmoj\GI19678-PA 909 GI19678-PA 415..770 2..343 260 26.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16103-PA 958 GL16103-PA 421..955 1..537 2235 79.2 Plus
Dper\GL12463-PA 991 GL12463-PA 477..902 2..409 577 32.4 Plus
Dper\GL10275-PA 475 GL10275-PA 5..403 50..423 285 23.9 Plus
Dper\GL10901-PA 927 GL10901-PA 413..807 2..372 249 25.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14343-PA 958 GA14343-PA 421..955 1..537 2234 79.2 Plus
Dpse\GA16147-PB 943 GA16147-PB 429..854 2..409 577 32.4 Plus
Dpse\GA16147-PA 991 GA16147-PA 477..902 2..409 577 32.4 Plus
Dpse\GA28660-PA 1137 GA28660-PA 758..1090 45..332 282 25.3 Plus
Dpse\GA24531-PA 927 GA24531-PA 413..807 2..372 249 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14293-PA 956 GM14293-PA 419..956 1..538 2828 98.5 Plus
Dsec\GM10982-PA 986 GM10982-PA 476..901 2..409 566 32 Plus
Dsec\GM24910-PA 1274 GM24910-PA 778..1110 45..332 294 26.8 Plus
Dsec\GM11779-PA 921 GM11779-PA 416..838 2..400 225 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13531-PA 956 GD13531-PA 419..956 1..538 2822 98.1 Plus
Dsim\GD19956-PA 986 GD19956-PA 476..901 2..409 566 32 Plus
Dsim\GD12958-PA 1093 GD12958-PA 597..929 45..332 293 26.8 Plus
Dsim\GD24909-PA 921 GD24909-PA 416..838 2..400 219 23 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20915-PA 951 GJ20915-PA 418..951 1..538 2144 76 Plus
Dvir\GJ22553-PA 987 GJ22553-PA 476..932 2..440 573 31.1 Plus
Dvir\GJ12294-PA 1228 GJ12294-PA 753..1156 45..423 298 25.1 Plus
Dvir\GJ17169-PA 856 GJ17169-PA 343..742 2..379 245 24.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11308-PA 978 GK11308-PA 422..975 1..537 2345 79.9 Plus
Dwil\GK12029-PA 987 GK12029-PA 476..924 2..432 569 31.2 Plus
Dwil\GK17464-PA 1237 GK17464-PA 762..1165 45..423 296 24.7 Plus
Dwil\GK20733-PA 922 GK20733-PA 407..764 2..343 244 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21038-PA 956 GE21038-PA 419..956 1..538 2773 96.8 Plus
Dyak\GE24952-PA 986 GE24952-PA 476..901 2..409 565 32 Plus
Dyak\GE21276-PA 1238 GE21276-PA 740..1166 43..423 294 25.4 Plus
Dyak\GE11402-PA 925 GE11402-PA 416..814 2..372 227 23.7 Plus

AT29936.hyp Sequence

Translation from 248 to 1864

> AT29936.hyp
MQKLDSSIKANDQEIGDVDCQIKLDFRLLVPSSSMDRGETELLLSLIEVG
QKRILMHPLCETFLFLKWRRIRKFFLMSLAYHTLFVILFTFYVIWVYVRC
CKKEELCVAPGYVSTIGYLVIILNLILLGKEVFQMAHGLRGYAKYWENWL
QWTIGTGVLLCVTPETVRTDDLTAVPVWQHHVAAIVILLVWLELMMLVGR
FPIFGVYVQMFTKVAVNFAKFLLAYICLLVAFGLSFAVLFNDYPAFENIT
WSFLKSITMMSGELEFEDIFYGDYAVKFPVTAHIIFLSFVLLVTVILTNL
MVGLAVSDIQGLQVSATLDRLVRQAELVSRLESLFFSRLLRSAPTNLIQL
CKRSALLRTSRDKLQFTIRPNDPRDNQLPEDIKLNVYKLVAERRDRNQSL
RRRQFENNYNIFSRSLQRQQQPLHTDFLKPEPATGTTKKTPQNLFHMHEL
LRPRSATNVPQQFRQEAEGTVQMKNQANVLSAVLAEVQAIKTQLVDLVAK
FERFSENATRKLNYSTDELCRLRQQGQSVASSHIRRHR*

AT29936.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
pyx-PB 538 CG17142-PB 1..538 1..538 2754 100 Plus
pyx-PA 956 CG17142-PA 419..956 1..538 2754 100 Plus
wtrw-PD 969 CG31284-PD 459..884 2..409 558 32 Plus
wtrw-PC 986 CG31284-PC 476..901 2..409 558 32 Plus
wtrw-PB 986 CG31284-PB 476..901 2..409 558 32 Plus