Clone AT30415 Report

Search the DGRC for AT30415

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:304
Well:15
Vector:pOTB7
Associated Gene/TranscriptCG2574-RA
Protein status:AT30415.pep: gold
Preliminary Size:1008
Sequenced Size:877

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2574 2002-01-01 Sim4 clustering to Release 2
CG2574 2002-04-21 Blastp of sequenced clone
CG2574 2003-01-01 Sim4 clustering to Release 3
CG2574 2008-04-29 Release 5.5 accounting
CG2574 2008-08-15 Release 5.9 accounting
CG2574 2008-12-18 5.12 accounting

Clone Sequence Records

AT30415.complete Sequence

877 bp (877 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113332

> AT30415.complete
GAAAACATGAAACCCACACAAAATTGAAGTTAGAAATCGGGACTCGAAAT
CGCCAAAATGTCCAGCGATCAGGTGAATTCCCAAACGGAAATGGAAACGG
AAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCAGAAGTGCTC
TCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACCCAGCACCAG
TCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTGGTTGTGTGG
TGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCGCCACCGAAT
TGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGACGGCAGGTGT
GAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCCGGCTGGATA
TACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATTCGGTTCACC
ACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCATTTGCCTGGA
TGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCAAGGTTCTAC
TTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGATCCGCTAGTC
ATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCACGACAAAAT
TGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGCAGGATAAGA
ACAGAGAAAAGGATGCGGATCAGGGTAATGAGCAAAATCAGGAAGAAAAT
CCAATGCCAGGACAGCAAGGAAATTAACAGTGTAACCAGAGTAACCAATC
AAATGTAACCTAATAACCTTAAATACCATTATAAAATAAACAAAAACAAT
GGCATTATGAAAAAAAAAAAAAAAAAA

AT30415.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 1068 CG2574-RA 174..1035 1..862 4265 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12299860..12300404 1..545 2725 100 Plus
chrX 22417052 chrX 12300469..12300787 541..859 1595 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:02:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408898..12409442 1..545 2725 100 Plus
X 23542271 X 12409508..12409828 542..862 1560 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12416996..12417540 1..545 2725 100 Plus
X 23527363 X 12417606..12417926 542..862 1560 99 Plus
Blast to na_te.dros performed 2019-03-15 19:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5883..5959 710..786 114 64.1 Plus

AT30415.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:12:55 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12299860..12300402 1..543 100 -> Plus
chrX 12300472..12300787 544..859 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:30:46 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 1..720 58..777 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:22 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 1..720 58..777 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:09 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 1..720 58..777 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:53:39 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 1..720 58..777 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:46 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 1..720 58..777 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:41:23 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 10..868 1..859 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:22 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 10..868 1..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:09 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 38..896 1..859 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:53:39 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 10..868 1..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:46 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 38..896 1..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:12:55 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
X 12408898..12409440 1..543 100 -> Plus
X 12409510..12409825 544..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:12:55 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
X 12408898..12409440 1..543 100 -> Plus
X 12409510..12409825 544..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:12:55 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
X 12408898..12409440 1..543 100 -> Plus
X 12409510..12409825 544..859 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:09 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12302931..12303473 1..543 100 -> Plus
arm_X 12303543..12303858 544..859 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:25:51 Download gff for AT30415.complete
Subject Subject Range Query Range Percent Splice Strand
X 12416996..12417538 1..543 100 -> Plus
X 12417608..12417923 544..859 99   Plus

AT30415.pep Sequence

Translation from 57 to 776

> AT30415.pep
MSSDQVNSQTEMETEARARAEVEVEVEPEVLSRASVASSVEETAPSTSHS
ASGKSTEAPLTGCVVRIKSELQDIRKNPPPNCTADLHHGDLLHWTAGVNG
PVGSVYEGGHFRLDIRFPASYPFRAPRIRFTTRIYHCNVDSRGAICLDVL
GERWSPVMNVAKVLLSIYVLMSECNPDDPLVMCIADQYKTNRREHDKIAR
HWTKLFAMTKAQDKNREKDADQGNEQNQEENPMPGQQGN*

AT30415.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19392-PA 272 GF19392-PA 1..242 1..222 806 65.4 Plus
Dana\GF14068-PA 224 GF14068-PA 85..223 66..204 460 56.1 Plus
Dana\GF10262-PA 350 GF10262-PA 170..324 53..207 416 46.5 Plus
Dana\GF18131-PA 147 GF18131-PA 5..147 66..208 415 51.7 Plus
Dana\GF19231-PA 151 GF19231-PA 7..149 66..208 318 42 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17717-PA 241 GG17717-PA 1..241 1..229 998 80.1 Plus
Dere\GG10359-PA 232 GG10359-PA 90..231 66..207 465 55.6 Plus
Dere\GG24787-PA 169 GG24787-PA 3..166 36..207 445 47.7 Plus
Dere\GG21088-PA 147 GG21088-PA 5..147 66..208 415 51.7 Plus
Dere\GG14251-PA 406 GG14251-PA 260..404 63..207 377 42.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17966-PA 268 GH17966-PA 15..194 39..208 631 63.9 Plus
Dgri\GH13340-PA 240 GH13340-PA 36..239 7..207 467 45.1 Plus
Dgri\GH14086-PA 147 GH14086-PA 5..147 66..208 415 51.7 Plus
Dgri\GH17677-PA 151 GH17677-PA 7..149 66..208 318 42 Plus
Dgri\GH22592-PA 151 GH22592-PA 7..149 66..208 317 42 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 239 CG2574-PA 1..239 1..239 1266 100 Plus
Ubc2-PD 232 CG6720-PD 90..231 66..207 441 55.6 Plus
Ubc2-PC 232 CG6720-PC 90..231 66..207 441 55.6 Plus
Ubc2-PB 232 CG6720-PB 90..231 66..207 441 55.6 Plus
Ubc2-PA 232 CG6720-PA 90..231 66..207 441 55.6 Plus
eff-PC 147 CG7425-PC 5..147 66..208 409 51.7 Plus
eff-PB 147 CG7425-PB 5..147 66..208 409 51.7 Plus
eff-PA 147 CG7425-PA 5..147 66..208 409 51.7 Plus
CG5440-PC 169 CG5440-PC 6..166 39..207 408 46.7 Plus
CG5440-PB 169 CG5440-PB 6..166 39..207 408 46.7 Plus
CG10862-PA 354 CG10862-PA 199..353 52..207 384 45.2 Plus
ben-PE 151 CG18319-PE 7..149 66..208 311 42 Plus
ben-PD 151 CG18319-PD 7..149 66..208 311 42 Plus
ben-PB 151 CG18319-PB 7..149 66..208 311 42 Plus
ben-PC 151 CG18319-PC 7..149 66..208 311 42 Plus
ben-PA 151 CG18319-PA 7..149 66..208 311 42 Plus
CG3473-PB 151 CG3473-PB 7..149 66..208 303 41.3 Plus
CG3473-PA 151 CG3473-PA 7..149 66..208 303 41.3 Plus
Ubc6-PC 151 CG2013-PC 8..139 66..197 262 36.4 Plus
Ubc6-PA 151 CG2013-PA 8..139 66..197 262 36.4 Plus
Ubc4-PC 199 CG8284-PC 6..153 64..207 254 38.4 Plus
Ubc4-PB 199 CG8284-PB 6..153 64..207 254 38.4 Plus
Ubc4-PA 199 CG8284-PA 6..153 64..207 254 38.4 Plus
Ubc10-PA 154 CG5788-PA 6..154 66..213 235 34.4 Plus
vih-PA 178 CG10682-PA 36..150 66..180 225 38.3 Plus
CG40045-PA 168 CG40045-PA 10..158 67..200 223 30.2 Plus
CG7656-PF 317 CG7656-PF 25..188 46..196 221 30.3 Plus
CG7656-PA 317 CG7656-PA 25..188 46..196 221 30.3 Plus
CG7656-PE 319 CG7656-PE 25..189 46..197 219 30.1 Plus
CG7656-PD 319 CG7656-PD 25..189 46..197 219 30.1 Plus
UbcE2M-PC 181 CG7375-PC 19..158 55..196 217 31.5 Plus
UbcE2M-PB 181 CG7375-PB 19..158 55..196 217 31.5 Plus
UbcE2M-PA 181 CG7375-PA 19..158 55..196 217 31.5 Plus
Ubc7-PB 167 CG4443-PB 8..156 66..200 211 30.2 Plus
Ubc7-PA 167 CG4443-PA 8..156 66..200 211 30.2 Plus
Ubc87F-PA 168 CG9602-PA 10..151 67..194 210 29.6 Plus
morgue-PA 491 CG15437-PA 368..484 93..208 210 38.5 Plus
Ubc84D-PA 153 CG12799-PA 32..145 91..204 207 35.7 Plus
CG40045-PD 167 CG40045-PD 10..157 67..200 204 29.5 Plus
CG7220-PC 154 CG7220-PC 10..151 66..196 202 35.9 Plus
CG7220-PA 154 CG7220-PA 10..151 66..196 202 35.9 Plus
CG7220-PD 154 CG7220-PD 10..151 66..196 202 35.9 Plus
CG7220-PE 190 CG7220-PE 46..187 66..196 202 35.9 Plus
CG7220-PF 190 CG7220-PF 46..187 66..196 202 35.9 Plus
CG7220-PB 190 CG7220-PB 46..187 66..196 202 35.9 Plus
CG17030-PA 180 CG17030-PA 40..170 90..220 194 29.5 Plus
CG8188-PD 209 CG8188-PD 18..132 66..180 185 30.4 Plus
CG8188-PC 209 CG8188-PC 18..132 66..180 185 30.4 Plus
CG8188-PB 209 CG8188-PB 18..132 66..180 185 30.4 Plus
CG8188-PA 209 CG8188-PA 18..132 66..180 185 30.4 Plus
UbcE2H-PB 183 CG2257-PB 40..176 100..230 181 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21620-PA 382 GI21620-PA 117..284 60..226 656 66.7 Plus
Dmoj\GI17815-PA 240 GI17815-PA 36..239 7..207 472 46.1 Plus
Dmoj\GI10619-PA 147 GI10619-PA 5..147 66..208 415 51.7 Plus
Dmoj\GI12815-PA 212 GI12815-PA 67..211 66..220 355 46.5 Plus
Dmoj\GI22711-PA 151 GI22711-PA 7..149 66..208 317 42 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26387-PA 228 GL26387-PA 86..227 66..207 458 55.6 Plus
Dper\GL23670-PA 147 GL23670-PA 5..147 66..208 415 51.7 Plus
Dper\GL22793-PA 283 GL22793-PA 123..281 48..207 381 45 Plus
Dper\GL22516-PA 220 GL22516-PA 64..207 63..207 366 44.1 Plus
Dper\GL14576-PA 282 GL14576-PA 105..277 33..207 363 40.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15395-PA 216 GA15395-PA 9..206 41..232 675 62.6 Plus
Dpse\GA19810-PA 228 GA19810-PA 86..227 66..207 458 55.6 Plus
Dpse\GA26693-PA 147 GA26693-PA 5..147 66..208 415 51.7 Plus
Dpse\GA24534-PA 212 GA24534-PA 3..196 12..207 366 37.8 Plus
Dpse\GA25195-PA 170 GA25195-PA 23..165 64..207 360 44.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11560-PA 237 GM11560-PA 1..237 1..239 1205 94.1 Plus
Dsec\GM11457-PA 232 GM11457-PA 90..231 66..207 466 55.6 Plus
Dsec\GM25828-PA 147 GM25828-PA 5..147 66..208 415 51.7 Plus
Dsec\GM16815-PA 164 GM16815-PA 6..163 39..204 399 46.4 Plus
Dsec\GM14046-PA 362 GM14046-PA 207..361 52..207 373 43.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17077-PA 237 GD17077-PA 1..237 1..239 1190 93.3 Plus
Dsim\GD22227-PA 232 GD22227-PA 90..231 66..207 462 55.6 Plus
Dsim\GD20402-PA 147 GD20402-PA 5..147 66..208 415 51.7 Plus
Dsim\GD23095-PA 164 GD23095-PA 6..163 39..204 398 46.4 Plus
Dsim\GD13323-PA 362 GD13323-PA 217..361 63..207 385 44.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16559-PA 312 GJ16559-PA 93..266 60..234 649 65.7 Plus
Dvir\GJ17643-PA 240 GJ17643-PA 36..239 7..207 463 46.1 Plus
Dvir\GJ22971-PA 147 GJ22971-PA 5..147 66..208 415 51.7 Plus
Dvir\GJ19035-PA 151 GJ19035-PA 1..149 60..208 318 40.9 Plus
Dvir\GJ23435-PA 151 GJ23435-PA 7..149 66..208 317 42 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16491-PA 236 GK16491-PA 94..231 70..207 563 68.8 Plus
Dwil\GK23983-PA 235 GK23983-PA 93..234 66..207 461 55.6 Plus
Dwil\GK11688-PA 147 GK11688-PA 5..147 66..208 415 51.7 Plus
Dwil\GK21643-PA 151 GK21643-PA 7..149 66..208 322 42.7 Plus
Dwil\GK25846-PA 151 GK25846-PA 7..149 66..208 318 42 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17005-PA 248 GE17005-PA 1..245 1..236 1001 82.9 Plus
Dyak\GE13339-PA 232 GE13339-PA 90..231 66..207 465 55.6 Plus
Dyak\GE17550-PA 163 GE17550-PA 5..163 44..206 440 50.3 Plus
Dyak\eff-PA 147 GE26430-PA 5..147 66..208 415 51.7 Plus
Dyak\GE20679-PA 349 GE20679-PA 194..348 52..207 384 43.3 Plus

AT30415.hyp Sequence

Translation from 57 to 776

> AT30415.hyp
MSSDQVNSQTEMETEARARAEVEVEVEPEVLSRASVASSVEETAPSTSHS
ASGKSTEAPLTGCVVRIKSELQDIRKNPPPNCTADLHHGDLLHWTAGVNG
PVGSVYEGGHFRLDIRFPASYPFRAPRIRFTTRIYHCNVDSRGAICLDVL
GERWSPVMNVAKVLLSIYVLMSECNPDDPLVMCIADQYKTNRREHDKIAR
HWTKLFAMTKAQDKNREKDADQGNEQNQEENPMPGQQGN*

AT30415.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 239 CG2574-PA 1..239 1..239 1266 100 Plus
Ubc2-PD 232 CG6720-PD 90..231 66..207 441 55.6 Plus
Ubc2-PC 232 CG6720-PC 90..231 66..207 441 55.6 Plus
Ubc2-PB 232 CG6720-PB 90..231 66..207 441 55.6 Plus
Ubc2-PA 232 CG6720-PA 90..231 66..207 441 55.6 Plus