Clone AT30609 Report

Search the DGRC for AT30609

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:306
Well:9
Vector:pOTB7
Associated Gene/TranscriptCG18335-RA
Protein status:AT30609.pep: gold
Sequenced Size:1306

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18335 2002-11-07 Blastp of sequenced clone
CG18335 2008-04-29 Release 5.5 accounting
CG18335 2008-08-15 Release 5.9 accounting
CG18335 2008-12-18 5.12 accounting

Clone Sequence Records

AT30609.complete Sequence

1306 bp (1306 high quality bases) assembled on 2002-11-07

GenBank Submission: BT001366

> AT30609.complete
GGCCTGTGTTATTCGTTGTAAATACACAAGTCATTTATAAAACAATTGTA
AATCTCTAGTATCCAAATTTTTTTGTGCAAGATAAATTTTAGAGAGTTAC
GAGAATGGACCACGCTATAACGCCGGAACCGCACTTGGTGCCAGGTTACA
CGGGTCACTGCGCCCAGAATCGCGACCGAGTGGGTCGAACTTATGGCCGT
CAGACGCACAAGCTGTTAATAGACCCCTGTATTTACCACGCTCCCGAACT
GATAGTGGCTCCCATTCATGCCAAGCGCGGCCTCAAGGACTATCCCACAG
AGCAGGAGCTGAAGATTCTGCGCACTCGTGAGGGTTTGGTGGACTCCGTT
TACCGACATCCCATATTACCAGGCTACGCCGGATTTGTCCCGAACAAAGT
GAGTCAGATTGGCAAGCGATATGTTGCTGCCGCATCCGCTGGAGTGGCTC
GGCATGAGACGCTGATGGAGTTGTATCGGTGCGAGAATCGGACGCTCAGG
CATCGGGATCTACTGGAGAGTGGGAACGGACTCTTCGACCGCAAGATCAA
CGAAAGACTGCTGCCACAAACCTACTACCGATCGCCCCTGATCCTGGTGA
CCGGAGTGTCCAAGGGCATTAAGGACGAGACTTGTCCGCCGAAAACGGAG
AAACTCTGCTATAGCAAGTTCACATCGCCGCACTTCCTGGAGGATGAAGA
TGCCGACAAGTTCATAATCAATGGTTACTCCGGCCACATTCCCATGTCAG
TGACCCGATTCGGGGAGTCCAACAAGGTGCTGACCAACCGGGCACTGTGC
AGCTTCTCGGACTATATGTACAAGCGGAAGCGGGATACGTGGTGTTGTGG
ACAGGATCTCAGCCGGCCGTCCATCACCTGCCCGCCCGTGGGACACTTCG
TCGTCTATCACGAGGACAGCGGAATGGTGCCCAACTATGCGGGTCATGTT
CCTGGGGAGACGTACAAGTTCGGACGCACCTACGCCAAGACCACATACGA
TGCGAAGCGCTGGCTGGAGGTGCACAAGAATCTTACAGTGCTGCCCGAGG
TGGCCAATCTGGATTACGCCTACTGAAGAGATCCACCTGCGGGTATTTTT
CCTCCGGGCATGTTCGAATTGTAACGCTTTTGTCAAGGCCTTGCCACCCC
ACGTCGCAAGTGCAGCATTTATTGTCCTTGTATCACCTGGTCCCACTGGC
GATTGTTGTGATGTATCGATACAACAACAACATCCCCAGCTTTCTATCTA
CGTCGTTCGTTGCAGCAAATAAATAAGTTTTAATTGAAAAAAAAAAAAAA
AAAAAA

AT30609.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18335-RA 1289 CG18335-RA 1..1287 1..1287 6375 99.6 Plus
fbl6-RA 3730 fbl6-RA 1..75 1213..1287 375 100 Plus
fbl6-RB 3395 fbl6-RB 1..65 1223..1287 325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7177120..7178261 1286..145 5710 100 Minus
chr2R 21145070 chr2R 7178324..7178468 145..1 725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11289687..11290829 1287..145 5670 99.7 Minus
2R 25286936 2R 11290892..11291036 145..1 710 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11290886..11292028 1287..145 5670 99.7 Minus
2R 25260384 2R 11292091..11292235 145..1 710 99.3 Minus
Blast to na_te.dros performed on 2019-03-15 17:21:24 has no hits.

AT30609.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:22:42 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7177120..7178260 146..1286 100 <- Minus
chr2R 7178324..7178468 1..145 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:30:56 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..972 105..1076 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:07:19 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..972 105..1076 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:32:49 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..972 105..1076 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:57:01 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..972 105..1076 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:17 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..972 105..1076 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:27:11 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..1286 1..1286 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:07:18 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..1286 1..1286 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:32:49 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 61..1346 1..1286 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:57:01 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 1..1286 1..1286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:17 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
CG18335-RA 61..1346 1..1286 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:42 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11289688..11290828 146..1286 99 <- Minus
2R 11290892..11291036 1..145 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:42 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11289688..11290828 146..1286 99 <- Minus
2R 11290892..11291036 1..145 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:42 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11289688..11290828 146..1286 99 <- Minus
2R 11290892..11291036 1..145 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:32:49 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7177193..7178333 146..1286 99 <- Minus
arm_2R 7178397..7178541 1..145 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:29:36 Download gff for AT30609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11290887..11292027 146..1286 99 <- Minus
2R 11292091..11292235 1..145 99   Minus

AT30609.hyp Sequence

Translation from 104 to 1075

> AT30609.hyp
MDHAITPEPHLVPGYTGHCAQNRDRVGRTYGRQTHKLLIDPCIYHAPELI
VAPIHAKRGLKDYPTEQELKILRTREGLVDSVYRHPILPGYAGFVPNKVS
QIGKRYVAAASAGVARHETLMELYRCENRTLRHRDLLESGNGLFDRKINE
RLLPQTYYRSPLILVTGVSKGIKDETCPPKTEKLCYSKFTSPHFLEDEDA
DKFIINGYSGHIPMSVTRFGESNKVLTNRALCSFSDYMYKRKRDTWCCGQ
DLSRPSITCPPVGHFVVYHEDSGMVPNYAGHVPGETYKFGRTYAKTTYDA
KRWLEVHKNLTVLPEVANLDYAY*

AT30609.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18335-PA 323 CG18335-PA 1..323 1..323 1756 100 Plus

AT30609.pep Sequence

Translation from 104 to 1075

> AT30609.pep
MDHAITPEPHLVPGYTGHCAQNRDRVGRTYGRQTHKLLIDPCIYHAPELI
VAPIHAKRGLKDYPTEQELKILRTREGLVDSVYRHPILPGYAGFVPNKVS
QIGKRYVAAASAGVARHETLMELYRCENRTLRHRDLLESGNGLFDRKINE
RLLPQTYYRSPLILVTGVSKGIKDETCPPKTEKLCYSKFTSPHFLEDEDA
DKFIINGYSGHIPMSVTRFGESNKVLTNRALCSFSDYMYKRKRDTWCCGQ
DLSRPSITCPPVGHFVVYHEDSGMVPNYAGHVPGETYKFGRTYAKTTYDA
KRWLEVHKNLTVLPEVANLDYAY*

AT30609.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12418-PA 323 GF12418-PA 1..323 1..323 1559 88.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22676-PA 323 GG22676-PA 1..323 1..323 1686 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21934-PA 323 GH21934-PA 1..323 1..323 1279 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG18335-PA 323 CG18335-PA 1..323 1..323 1756 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19641-PA 323 GI19641-PA 1..323 1..323 1336 74 Plus
Dmoj\GI19639-PA 93 GI19639-PA 50..93 266..309 139 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16742-PA 324 GL16742-PA 2..324 1..323 1484 82.7 Plus
Dper\GL16740-PA 94 GL16740-PA 5..93 217..308 143 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14893-PA 324 GA14893-PA 2..324 1..323 1480 82.4 Plus
Dpse\GA14894-PA 94 GA14894-PA 5..93 217..308 147 37.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20454-PA 323 GM20454-PA 1..323 1..323 1724 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25922-PA 323 GD25922-PA 1..323 1..323 1724 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15007-PA 323 GJ15007-PA 1..323 1..323 1404 78 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21621-PA 324 GK21621-PA 1..324 1..323 1388 76.5 Plus
Dwil\GK21619-PA 94 GK21619-PA 51..94 266..309 140 54.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13031-PA 323 GE13031-PA 1..323 1..323 1690 97.2 Plus