Clone AT30656 Report

Search the DGRC for AT30656

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:306
Well:56
Vector:pOTB7
Associated Gene/TranscriptACXC-RA
Protein status:AT30656.pep: gold
Sequenced Size:3513

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5983 2003-01-01 Sim4 clustering to Release 3
CG5983 2005-01-26 Blastp of sequenced clone
ACXC 2008-04-29 Release 5.5 accounting
ACXC 2008-08-15 Release 5.9 accounting
ACXC 2008-12-18 5.12 accounting

Clone Sequence Records

AT30656.complete Sequence

3513 bp (3513 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021449

> AT30656.complete
TCTACACTCATTTTCAGTTATCTTACATAAAACACAATCCCAAACCATGA
GTTTTCCCAGAACTAACAGCAGGAAATCGCCGTTAAAAAGAAAGCGACTT
AGACCATGTCATCTTGACTATGCTAACGAACGCCTATGGGAACACAGTTA
CTTGAGGGAAAAATGCAAGGAGCTAAATTTGGAGGAGGAGTATAGGTACT
ACCAGGTCCGTCTGATGGTCAGCAACCTCACAATTTTTTACGTATTGTTT
ATAATTCTGGCCATGAGCTTTTTGACAATCGAGTTGCTTTACGTACAGCA
CTATAACGCCGTATTCTTTAACTTCGTTATCAGAGTAGTAAGCACTATCC
TGGTTTTAACCGTGTTGAGCATCAATTTTTGCGAAAAATTTGTCAGTCGC
CACCGATGGGTCATGATAGCCAGCTCAGTGCTATCGGTATATCTAGTGGT
ACTCACAGATATTGTTATGATCTCGTATCACTTTTACAAGAACGACTGGC
CCCTTAATACCTCATTCGATGTCTTCACACTCTGCATGATCTACATGTTC
CTGCCAATTCCCTCGATCAAGGGAGCTGCCCTTTTGGCATCCTCAGTCAG
TCTTATATATGTGGCCTTTTTTATGCACTCGCTCACTTTCAACGCGGTGT
ACACTGATCGCGATAGTTTCGGCTACGATGTGATATCCACTGATATATTA
CACAACCTGGGTTTTAACATGATGGGCATCTTTTTCCGCATTATGAACGA
CACCATGGTGCGCGCATCCTTCTTGGACCGCCATCAGTTCATCATGGAGG
AGACTTGGTTGCGTCATGCCTTGCTACAGGAATCGATACTCTTGGACAGC
ATACTACCGCCTCAAATTGCGAAACCCGTTCAGGAAAAAATCAAGAGCAA
AATAACCCAGTCCGAGAACAGCCCCGACCGCTTTCAAATGGGTCCGCGAA
CGACAGAATCCTTCATGGCCATACAAATTCATCCTGATGTCTCTATCCTG
TATGCAGACGTGGTGAACTACACTCACTTGACAACGACATTGACCGTGGG
AAACCTGGTGAAGGTCCTGCACGACCTCTACGGCAGATTCGATATCGCTG
CCTCCAACTTTAAAGTGCAGCGCATCAAGTTCCTGGGAGATTGCTACTAC
TGTGTGGCGGGTTTGACTACTCCGGATCCAGATCACGCGAAGTGTTGCGT
GTCTTTGGGCATATCCATGATTTCCAACATCCAGGAAGTTCGGGCTGAAC
GTGGATTGGATATCGACATGCGCATAGGTGTTCATTCGGGCTCTCTTCTC
GCTGGCATCATCGGCGAGGCCAAGCTGCAATTTGACATATGGGGAACGGA
CGTGGAGATCGCCAATCATCTGGAGTCTACTGGGGAACCAGGTTACGTTC
ACGTAAGTGGACGCACCCTAAGTATGCTAAATCCAGCGGATTATACTATA
TTAAGTGGTACGCAAAAGGCTCAAAGCGATCCAGTGTTGCAGTACATACA
CACCTATCTACTTACTGGTCAAGTGGCCCGCGAGTCATTTATAACTTCGA
TTGGTGGAGTTAGATCCAGTTCCGTTCTTGAAGTAAAGTCCATCGATCGG
ATCCGGTCAAGCAGGCCAAGTCAATCATCAATGACCGATGAGTTCCGAGA
AGAGTTCCGGAATATGCCAGTTGGTGGCATTAACTTAAACTCACCCTGCT
GCCGACGAACTAGATTGGACACTCATAAGAAAACCCAGCGGGAGATTGGC
ATTTTTTGTGCGGCGTTCAAGGACTCTTCCCTGGAATGGAACTACCTGCA
CCAGCCGGACTTCATCTTCAAGTCCTCAATGCTGCTGGCCTGGGGAATCG
GGTGCTGCTTGATCTATATCCAGATAGTGACCAACAACTTTTCGTGCACT
GCATGCATTGTGGTCGACTTGGTAACTTTCTTCTTTCTGACTTCCTTGCT
GTGCCTCGCGTGGTACAAAAACGTTTGTTGGTGGAAAAGTGGGCGCTACG
AGTTCAGAATCTATGGAAAATACAGCTGCATGGCGTTTCATATTTTTGAA
AAGATCCAACACAGTGTGTCCCTGCGCATTACTGTCTATCTGGGGATCTT
ATTTTCCTACTATGCTGTGATTTCCCTGATAATGTTAAACTGTGACCGCG
ACATGTATGAGTTGAGTTACATTGAGAGCAAGATCTATCACTACGAAATG
GATCGGGATACATGTTTCCATCCCTGGGTCTTCACAAACATGATTTCCCT
GATCCTGGGCATAAGCTACACCTTCGCCCGAATTCCATTTGGCCTCAAGA
TAGTGATCAGCTGCTGCGAGACACTTGCCTACTTGTTAATCGTATTCTTC
CAGTTCGCATTCATTTTCCAGCACAGTGCCACCACAACTCCCTTTATGAA
GGCGGAACTAGCTCATTGTCTTCGAGTGTGCATGATGTTACTCACGATGT
ACGCAAAGGAGCGTCAGTCAGAATTTAATACTAAAATGAACTATAAGCTT
AATGTGGACTTGCAAAACAAGCAAAAAGCGGCAGATTTAACAAACCAATC
CATCATAATCCTGCTCAATAACATACTCCCTTCTCATGTTGTTGACCTCT
ATCTCAATTCATTGGCCAAACACGAGCTCTACTATGAAAACTATCGAATG
GTATCAGTCATGTTTGCCATGCTCATCAATTTTCCCATGAACTTGCCAAG
CCTCCGGGTGCTTAACGATATCATAACACAGTTCGATAGACTGTTGACTG
CTTACAGGGAATATTACGTAGTCGAGAAGATCAAAGTCGTGGGCTGCACT
TATATGGCGGCCTGTGGATTGGACTTTAACCTGGCGTCAAACATCCGCCA
AACGGACCACTTTCGCAATAGTTCCCTACATGTTGAGGTGGAACACGCAC
GTAATCATCGTATGACCGACGAAAACTACGACAGCGATATGAACAATGAT
GAAGTGGTCTTCATAATGACCACCTTCGCCCTGGACCTGATGCGAACTCT
AGCAGCATGCAACCGGGCGTACTCAAGCTCATTTTTCGAGCGGTCCTTGT
CCCAGGGGAAGATCTGCATCGGTATCTCCAGCGGTGAGATAATGGCCGGC
GTGGTGGGAGCTTCTCAGCCGCACTACGACATATGGGGAAACCCTGTGAA
TATGGCTTCTCGAATGGAATCGACAGGGCTGCCTGGACACATCCAGGTGA
CGGAGGAGTCAGCGAAAATTCTTCAGGAGTTTGACATTAAATGTATATAC
CGCGGCATGACCTTCGTGAAGGGTCGTGGTGACATACCCACCTATTTTGT
GGGCATTGACGAGAACCTTAAATTTATGTCCGCAAAATTGGTAAATCGTA
GTTTGTCAAGACGTTTCTCAGTTATGTCTTCACTAGATCCGGATAGCCTT
AGGAAGAGTTCGTCTAGTGATCAAGAATCTGGCGAATAACTTGGTATATT
TTTTCAAACATTTCCGAAAAAAAATATATATTTTTGATATGTAAAAAAAA
AAAAAAAAAAAAA

AT30656.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
ACXC-RA 3535 ACXC-RA 28..3521 1..3494 17410 99.8 Plus
ACXC-RB 3562 ACXC-RB 1415..3562 1343..3490 10725 99.9 Plus
ACXC-RB 3562 ACXC-RB 14..1357 1..1344 6675 99.7 Plus
ACXB-RA 3563 ACXB-RA 2245..2867 2213..2835 1660 84.4 Plus
ACXB-RA 3563 ACXB-RA 3077..3353 3060..3336 740 84.4 Plus
ACXB-RA 3563 ACXB-RA 982..1194 953..1165 540 83.5 Plus
ACXB-RA 3563 ACXB-RA 524..632 495..603 290 84.4 Plus
ACXB-RA 3563 ACXB-RA 1777..1907 1748..1878 280 80.9 Plus
ACXB-RA 3563 ACXB-RA 724..906 695..877 240 75.4 Plus
ACXB-RA 3563 ACXB-RA 1348..1453 1319..1424 170 77.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12911839..12912626 456..1243 3895 99.6 Plus
chr2L 23010047 chr2L 12914845..12915449 2888..3492 3025 100 Plus
chr2L 23010047 chr2L 12913298..12913748 1684..2134 2255 100 Plus
chr2L 23010047 chr2L 12913798..12914161 2134..2497 1820 100 Plus
chr2L 23010047 chr2L 12912847..12913187 1343..1683 1690 99.7 Plus
chr2L 23010047 chr2L 12918086..12918406 2177..2497 930 86 Plus
chr2L 23010047 chr2L 12911617..12911779 296..458 815 100 Plus
chr2L 23010047 chr2L 12911218..12911375 1..158 790 100 Plus
chr2L 23010047 chr2L 12914377..12914533 2591..2747 770 99.4 Plus
chr2L 23010047 chr2L 12919203..12919479 3060..3336 740 84.5 Plus
chr2L 23010047 chr2L 12914587..12914732 2743..2888 730 100 Plus
chr2L 23010047 chr2L 12911422..12911563 157..298 710 100 Plus
chr2L 23010047 chr2L 12920692..12921153 701..1165 610 75.9 Plus
chr2L 23010047 chr2L 12925426..12925649 965..1188 610 84.8 Plus
chr2L 23010047 chr2L 12916372..12916842 695..1165 585 74.9 Plus
chr2L 23010047 chr2L 12912687..12912789 1242..1344 515 100 Plus
chr2L 23010047 chr2L 12923478..12923868 2941..3331 500 75.2 Plus
chr2L 23010047 chr2L 12928041..12928295 3067..3321 495 79.6 Plus
chr2L 23010047 chr2L 12922481..12922804 2174..2497 480 76.5 Plus
chr2L 23010047 chr2L 12914218..12914312 2497..2591 475 100 Plus
chr2L 23010047 chr2L 12918632..12918775 2600..2743 345 82.6 Plus
chr2L 23010047 chr2L 12923043..12923168 2615..2740 330 84.1 Plus
chr2L 23010047 chr2L 12923224..12923309 2748..2833 325 91.9 Plus
chr2L 23010047 chr2L 12916172..12916280 495..603 290 84.4 Plus
chr2L 23010047 chr2L 12922869..12922955 2505..2591 285 88.5 Plus
chr2L 23010047 chr2L 12917594..12917724 1748..1878 280 80.9 Plus
chr2L 23010047 chr2L 12918835..12918921 2749..2835 270 87.4 Plus
chr2L 23010047 chr2L 12927465..12927548 2600..2683 270 88.1 Plus
chr2L 23010047 chr2L 12920486..12920567 495..576 245 86.6 Plus
chr2L 23010047 chr2L 12925198..12925286 725..813 190 80.9 Plus
chr2L 23010047 chr2L 12925808..12925884 1268..1344 190 83.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12913164..12913951 456..1243 3895 99.6 Plus
2L 23513712 2L 12916170..12916776 2888..3494 3035 100 Plus
2L 23513712 2L 12914623..12915073 1684..2134 2255 100 Plus
2L 23513712 2L 12915123..12915486 2134..2497 1820 100 Plus
2L 23513712 2L 12914172..12914512 1343..1683 1690 99.7 Plus
2L 23513712 2L 12919411..12919731 2177..2497 930 86 Plus
2L 23513712 2L 12912942..12913104 296..458 815 100 Plus
2L 23513712 2L 12912543..12912700 1..158 790 100 Plus
2L 23513712 2L 12915702..12915858 2591..2747 770 99.4 Plus
2L 23513712 2L 12920528..12920804 3060..3336 740 84.5 Plus
2L 23513712 2L 12915912..12916057 2743..2888 730 100 Plus
2L 23513712 2L 12912747..12912888 157..298 710 100 Plus
2L 23513712 2L 12921810..12922477 495..1165 635 73.3 Plus
2L 23513712 2L 12926750..12926973 965..1188 610 84.8 Plus
2L 23513712 2L 12917697..12918167 695..1165 585 74.9 Plus
2L 23513712 2L 12914012..12914114 1242..1344 515 100 Plus
2L 23513712 2L 12929362..12929616 3067..3321 510 80 Plus
2L 23513712 2L 12924802..12925192 2941..3331 500 75.2 Plus
2L 23513712 2L 12915543..12915637 2497..2591 475 100 Plus
2L 23513712 2L 12923805..12924128 2174..2497 465 76.2 Plus
2L 23513712 2L 12919957..12920100 2600..2743 345 82.6 Plus
2L 23513712 2L 12924367..12924492 2615..2740 330 84.1 Plus
2L 23513712 2L 12924548..12924633 2748..2833 325 91.9 Plus
2L 23513712 2L 12917497..12917605 495..603 290 84.4 Plus
2L 23513712 2L 12924193..12924279 2505..2591 285 88.5 Plus
2L 23513712 2L 12918919..12919049 1748..1878 280 80.9 Plus
2L 23513712 2L 12920160..12920246 2749..2835 270 87.4 Plus
2L 23513712 2L 12928786..12928869 2600..2683 255 86.9 Plus
2L 23513712 2L 12926522..12926610 725..813 190 80.9 Plus
2L 23513712 2L 12927132..12927208 1268..1344 190 83.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12913164..12913951 456..1243 3895 99.6 Plus
2L 23513712 2L 12916170..12916776 2888..3494 3035 100 Plus
2L 23513712 2L 12914623..12915073 1684..2134 2255 100 Plus
2L 23513712 2L 12915123..12915486 2134..2497 1820 100 Plus
2L 23513712 2L 12914172..12914512 1343..1683 1690 99.7 Plus
2L 23513712 2L 12919447..12919731 2213..2497 915 88 Plus
2L 23513712 2L 12912942..12913104 296..458 815 100 Plus
2L 23513712 2L 12912543..12912700 1..158 790 100 Plus
2L 23513712 2L 12915702..12915858 2591..2747 770 99.3 Plus
2L 23513712 2L 12920528..12920804 3060..3336 740 84.4 Plus
2L 23513712 2L 12915912..12916057 2743..2888 730 100 Plus
2L 23513712 2L 12912747..12912888 157..298 710 100 Plus
2L 23513712 2L 12926750..12926973 965..1188 610 84.8 Plus
2L 23513712 2L 12917955..12918167 953..1165 540 83.5 Plus
2L 23513712 2L 12922266..12922477 954..1165 520 83 Plus
2L 23513712 2L 12914012..12914114 1242..1344 515 100 Plus
2L 23513712 2L 12929362..12929616 3067..3321 510 80 Plus
2L 23513712 2L 12915543..12915637 2497..2591 475 100 Plus
2L 23513712 2L 12924929..12925069 3068..3208 345 82.9 Plus
2L 23513712 2L 12919957..12920100 2600..2743 345 82.6 Plus
2L 23513712 2L 12924367..12924492 2615..2740 330 84.1 Plus
2L 23513712 2L 12924548..12924633 2748..2833 325 91.8 Plus
2L 23513712 2L 12917497..12917605 495..603 290 84.4 Plus
2L 23513712 2L 12924193..12924279 2505..2591 285 88.5 Plus
2L 23513712 2L 12918919..12919049 1748..1878 280 80.9 Plus
2L 23513712 2L 12920160..12920246 2749..2835 270 87.3 Plus
2L 23513712 2L 12923805..12923931 2174..2300 260 80.3 Plus
2L 23513712 2L 12922016..12922123 701..808 255 82.4 Plus
2L 23513712 2L 12928786..12928869 2600..2683 255 86.9 Plus
2L 23513712 2L 12921810..12921891 495..576 245 86.5 Plus
2L 23513712 2L 12917697..12917879 695..877 240 75.4 Plus
2L 23513712 2L 12924057..12924128 2426..2497 225 87.5 Plus
2L 23513712 2L 12925112..12925192 3251..3331 210 83.9 Plus
2L 23513712 2L 12927132..12927208 1268..1344 190 83.1 Plus
2L 23513712 2L 12926522..12926610 725..813 190 80.8 Plus
3L 28103327 3L 2240142..2240219 1124..1201 180 82 Plus
3L 28103327 3L 2243485..2243552 3227..3294 175 83.8 Plus
2L 23513712 2L 12919798..12919866 2506..2574 165 82.6 Plus
3L 28103327 3L 2248166..2248240 3092..3166 165 81.3 Plus
Blast to na_te.dros performed 2019-03-16 07:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 5995..6045 2144..2095 135 76.5 Minus

AT30656.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:45:37 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12914378..12914529 2592..2743 100 -> Plus
chr2L 12914588..12914732 2744..2888 100 -> Plus
chr2L 12913799..12914160 2135..2496 100 -> Plus
chr2L 12911218..12911374 1..157 100 -> Plus
chr2L 12911423..12911563 158..298 100 -> Plus
chr2L 12911620..12911779 299..458 100 -> Plus
chr2L 12911842..12912625 459..1242 99 -> Plus
chr2L 12912688..12912788 1243..1343 100 -> Plus
chr2L 12912848..12913187 1344..1683 99 -> Plus
chr2L 12913298..12913748 1684..2134 100 -> Plus
chr2L 12914218..12914312 2497..2591 100 -> Plus
chr2L 12914846..12915449 2889..3492 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:31:04 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 1..3393 47..3439 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:41 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 1..3393 47..3439 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:31 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 1..3393 47..3439 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:14 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 1..3393 47..3439 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:59 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 1..3393 47..3439 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:07:47 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 14..3505 1..3492 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:41 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 14..3505 1..3492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:31 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 14..3505 1..3492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:14 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 14..3505 1..3492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:59 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 14..3505 1..3492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:37 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12912543..12912699 1..157 100 -> Plus
2L 12912748..12912888 158..298 100 -> Plus
2L 12912945..12913104 299..458 100 -> Plus
2L 12913167..12913950 459..1242 99 -> Plus
2L 12914013..12914113 1243..1343 100 -> Plus
2L 12914173..12914512 1344..1683 99 -> Plus
2L 12914623..12915073 1684..2134 100 -> Plus
2L 12915124..12915485 2135..2496 100 -> Plus
2L 12915543..12915637 2497..2591 100 -> Plus
2L 12915703..12915854 2592..2743 100 -> Plus
2L 12915913..12916057 2744..2888 100 -> Plus
2L 12916171..12916774 2889..3492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:37 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12912543..12912699 1..157 100 -> Plus
2L 12912748..12912888 158..298 100 -> Plus
2L 12912945..12913104 299..458 100 -> Plus
2L 12913167..12913950 459..1242 99 -> Plus
2L 12914013..12914113 1243..1343 100 -> Plus
2L 12914173..12914512 1344..1683 99 -> Plus
2L 12914623..12915073 1684..2134 100 -> Plus
2L 12915124..12915485 2135..2496 100 -> Plus
2L 12915543..12915637 2497..2591 100 -> Plus
2L 12915703..12915854 2592..2743 100 -> Plus
2L 12915913..12916057 2744..2888 100 -> Plus
2L 12916171..12916774 2889..3492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:37 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12912543..12912699 1..157 100 -> Plus
2L 12912748..12912888 158..298 100 -> Plus
2L 12912945..12913104 299..458 100 -> Plus
2L 12913167..12913950 459..1242 99 -> Plus
2L 12914013..12914113 1243..1343 100 -> Plus
2L 12914173..12914512 1344..1683 99 -> Plus
2L 12914623..12915073 1684..2134 100 -> Plus
2L 12915124..12915485 2135..2496 100 -> Plus
2L 12915543..12915637 2497..2591 100 -> Plus
2L 12915703..12915854 2592..2743 100 -> Plus
2L 12915913..12916057 2744..2888 100 -> Plus
2L 12916171..12916774 2889..3492 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:31 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12912543..12912699 1..157 100 -> Plus
arm_2L 12912748..12912888 158..298 100 -> Plus
arm_2L 12912945..12913104 299..458 100 -> Plus
arm_2L 12913167..12913950 459..1242 99 -> Plus
arm_2L 12914013..12914113 1243..1343 100 -> Plus
arm_2L 12914173..12914512 1344..1683 99 -> Plus
arm_2L 12914623..12915073 1684..2134 100 -> Plus
arm_2L 12915124..12915485 2135..2496 100 -> Plus
arm_2L 12915543..12915637 2497..2591 100 -> Plus
arm_2L 12915703..12915854 2592..2743 100 -> Plus
arm_2L 12915913..12916057 2744..2888 100 -> Plus
arm_2L 12916171..12916774 2889..3492 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:36 Download gff for AT30656.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12914013..12914113 1243..1343 100 -> Plus
2L 12913167..12913950 459..1242 99 -> Plus
2L 12914173..12914512 1344..1683 99 -> Plus
2L 12914623..12915073 1684..2134 100 -> Plus
2L 12915124..12915485 2135..2496 100 -> Plus
2L 12915543..12915637 2497..2591 100 -> Plus
2L 12915703..12915854 2592..2743 100 -> Plus
2L 12915913..12916057 2744..2888 100 -> Plus
2L 12916171..12916774 2889..3492 100   Plus
2L 12912748..12912888 158..298 100 -> Plus
2L 12912945..12913104 299..458 100 -> Plus
2L 12912543..12912699 1..157 100 -> Plus

AT30656.hyp Sequence

Translation from 1 to 3438

> AT30656.hyp
LHSFSVILHKTQSQTMSFPRTNSRKSPLKRKRLRPCHLDYANERLWEHSY
LREKCKELNLEEEYRYYQVRLMVSNLTIFYVLFIILAMSFLTIELLYVQH
YNAVFFNFVIRVVSTILVLTVLSINFCEKFVSRHRWVMIASSVLSVYLVV
LTDIVMISYHFYKNDWPLNTSFDVFTLCMIYMFLPIPSIKGAALLASSVS
LIYVAFFMHSLTFNAVYTDRDSFGYDVISTDILHNLGFNMMGIFFRIMND
TMVRASFLDRHQFIMEETWLRHALLQESILLDSILPPQIAKPVQEKIKSK
ITQSENSPDRFQMGPRTTESFMAIQIHPDVSILYADVVNYTHLTTTLTVG
NLVKVLHDLYGRFDIAASNFKVQRIKFLGDCYYCVAGLTTPDPDHAKCCV
SLGISMISNIQEVRAERGLDIDMRIGVHSGSLLAGIIGEAKLQFDIWGTD
VEIANHLESTGEPGYVHVSGRTLSMLNPADYTILSGTQKAQSDPVLQYIH
TYLLTGQVARESFITSIGGVRSSSVLEVKSIDRIRSSRPSQSSMTDEFRE
EFRNMPVGGINLNSPCCRRTRLDTHKKTQREIGIFCAAFKDSSLEWNYLH
QPDFIFKSSMLLAWGIGCCLIYIQIVTNNFSCTACIVVDLVTFFFLTSLL
CLAWYKNVCWWKSGRYEFRIYGKYSCMAFHIFEKIQHSVSLRITVYLGIL
FSYYAVISLIMLNCDRDMYELSYIESKIYHYEMDRDTCFHPWVFTNMISL
ILGISYTFARIPFGLKIVISCCETLAYLLIVFFQFAFIFQHSATTTPFMK
AELAHCLRVCMMLLTMYAKERQSEFNTKMNYKLNVDLQNKQKAADLTNQS
IIILLNNILPSHVVDLYLNSLAKHELYYENYRMVSVMFAMLINFPMNLPS
LRVLNDIITQFDRLLTAYREYYVVEKIKVVGCTYMAACGLDFNLASNIRQ
TDHFRNSSLHVEVEHARNHRMTDENYDSDMNNDEVVFIMTTFALDLMRTL
AACNRAYSSSFFERSLSQGKICIGISSGEIMAGVVGASQPHYDIWGNPVN
MASRMESTGLPGHIQVTEESAKILQEFDIKCIYRGMTFVKGRGDIPTYFV
GIDENLKFMSAKLVNRSLSRRFSVMSSLDPDSLRKSSSSDQESGE*

AT30656.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
ACXC-PA 1130 CG5983-PA 1..1130 16..1145 5888 100 Plus
ACXB-PA 1114 CG17174-PA 10..1112 34..1140 3795 65.2 Plus
ACXA-PA 1112 CG17176-PA 3..1093 20..1113 3643 63.7 Plus
ACXA-PC 1107 CG17176-PC 3..1088 20..1113 3609 63.4 Plus
ACXE-PB 1123 CG17178-PB 3..1099 31..1128 2828 50.7 Plus

AT30656.pep Sequence

Translation from 46 to 3438

> AT30656.pep
MSFPRTNSRKSPLKRKRLRPCHLDYANERLWEHSYLREKCKELNLEEEYR
YYQVRLMVSNLTIFYVLFIILAMSFLTIELLYVQHYNAVFFNFVIRVVST
ILVLTVLSINFCEKFVSRHRWVMIASSVLSVYLVVLTDIVMISYHFYKND
WPLNTSFDVFTLCMIYMFLPIPSIKGAALLASSVSLIYVAFFMHSLTFNA
VYTDRDSFGYDVISTDILHNLGFNMMGIFFRIMNDTMVRASFLDRHQFIM
EETWLRHALLQESILLDSILPPQIAKPVQEKIKSKITQSENSPDRFQMGP
RTTESFMAIQIHPDVSILYADVVNYTHLTTTLTVGNLVKVLHDLYGRFDI
AASNFKVQRIKFLGDCYYCVAGLTTPDPDHAKCCVSLGISMISNIQEVRA
ERGLDIDMRIGVHSGSLLAGIIGEAKLQFDIWGTDVEIANHLESTGEPGY
VHVSGRTLSMLNPADYTILSGTQKAQSDPVLQYIHTYLLTGQVARESFIT
SIGGVRSSSVLEVKSIDRIRSSRPSQSSMTDEFREEFRNMPVGGINLNSP
CCRRTRLDTHKKTQREIGIFCAAFKDSSLEWNYLHQPDFIFKSSMLLAWG
IGCCLIYIQIVTNNFSCTACIVVDLVTFFFLTSLLCLAWYKNVCWWKSGR
YEFRIYGKYSCMAFHIFEKIQHSVSLRITVYLGILFSYYAVISLIMLNCD
RDMYELSYIESKIYHYEMDRDTCFHPWVFTNMISLILGISYTFARIPFGL
KIVISCCETLAYLLIVFFQFAFIFQHSATTTPFMKAELAHCLRVCMMLLT
MYAKERQSEFNTKMNYKLNVDLQNKQKAADLTNQSIIILLNNILPSHVVD
LYLNSLAKHELYYENYRMVSVMFAMLINFPMNLPSLRVLNDIITQFDRLL
TAYREYYVVEKIKVVGCTYMAACGLDFNLASNIRQTDHFRNSSLHVEVEH
ARNHRMTDENYDSDMNNDEVVFIMTTFALDLMRTLAACNRAYSSSFFERS
LSQGKICIGISSGEIMAGVVGASQPHYDIWGNPVNMASRMESTGLPGHIQ
VTEESAKILQEFDIKCIYRGMTFVKGRGDIPTYFVGIDENLKFMSAKLVN
RSLSRRFSVMSSLDPDSLRKSSSSDQESGE*

AT30656.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14211-PA 1703 GF14211-PA 627..1700 39..1127 3240 56.4 Plus
Dana\GF14210-PA 1119 GF14210-PA 3..1087 7..1094 2888 52.3 Plus
Dana\GF14212-PA 1080 GF14212-PA 1..1035 30..1093 2610 48 Plus
Dana\GF23423-PA 1128 GF23423-PA 1..1127 1..1123 2524 45.8 Plus
Dana\GF23420-PA 1132 GF23420-PA 4..1094 14..1094 2496 45.4 Plus
Dana\GF14211-PA 1703 GF14211-PA 12..553 9..556 1339 50 Plus
Dana\GF14211-PA 1703 GF14211-PA 543..625 817..899 292 68.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23798-PA 1130 GG23798-PA 1..1130 1..1130 5486 88.9 Plus
Dere\GG23799-PA 1122 GG23799-PA 3..1120 9..1125 3847 64.1 Plus
Dere\GG23801-PA 1099 GG23801-PA 4..1092 7..1098 3732 65.3 Plus
Dere\GG23802-PA 1124 GG23802-PA 8..1083 21..1097 2854 51.9 Plus
Dere\GG14845-PA 1162 GG14845-PA 12..1154 8..1097 1954 39.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16698-PA 1090 GH16698-PA 3..1062 21..1093 2605 48 Plus
Dgri\GH16681-PA 1087 GH16681-PA 3..1082 21..1125 2545 46.2 Plus
Dgri\GH14999-PA 1163 GH14999-PA 29..1149 27..1089 2005 40.4 Plus
Dgri\GH15000-PA 998 GH15000-PA 1..968 45..1091 1020 31.4 Plus
Dgri\GH17062-PA 1301 GH17062-PA 229..464 227..462 483 40.6 Plus
Dgri\GH17062-PA 1301 GH17062-PA 976..1293 742..1085 422 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
ACXC-PA 1130 CG5983-PA 1..1130 1..1130 5888 100 Plus
ACXB-PA 1114 CG17174-PA 10..1112 19..1125 3795 65.2 Plus
ACXA-PA 1112 CG17176-PA 3..1093 5..1098 3643 63.7 Plus
ACXA-PC 1107 CG17176-PC 3..1088 5..1098 3609 63.4 Plus
ACXE-PB 1123 CG17178-PB 3..1099 16..1113 2828 50.7 Plus
ACXA-PG 865 CG17176-PG 3..847 5..849 2718 61.6 Plus
ACXC-PB 436 CG5983-PB 1..434 1..434 2249 100 Plus
ACXD-PA 1162 CG5712-PA 12..1151 8..1094 1962 39.6 Plus
CG32305-PB 1164 CG32305-PB 26..1132 31..1130 1406 33.5 Plus
CG32301-PC 1111 CG32301-PC 21..1084 31..1093 1303 32.1 Plus
CG32301-PB 1050 CG32301-PB 39..1023 113..1093 1264 32.9 Plus
ACXA-PH 394 CG17176-PH 3..394 5..398 1246 62.3 Plus
ACXA-PD 447 CG17176-PD 3..393 5..397 1242 62.2 Plus
ACXD-PB 506 CG5712-PB 12..501 8..489 999 43.9 Plus
rut-PE 1391 CG9533-PE 23..1106 45..1122 802 25.6 Plus
rut-PF 1507 CG9533-PF 23..1106 45..1122 802 25.6 Plus
rut-PB 2055 CG9533-PB 23..1106 45..1122 802 25.6 Plus
rut-PC 2146 CG9533-PC 23..1106 45..1122 802 25.6 Plus
rut-PD 2171 CG9533-PD 23..1106 45..1122 802 25.6 Plus
rut-PG 2171 CG9533-PG 23..1106 45..1122 802 25.6 Plus
CG43373-PC 1854 CG42513-PA 513..1519 78..1127 750 24.9 Plus
CG32301-PD 684 CG32301-PD 21..674 31..693 648 29.8 Plus
Ac76E-PA 1307 CG7978-PA 63..462 41..461 477 30.8 Plus
Ac76E-PB 1312 CG7978-PB 63..462 41..461 477 30.8 Plus
rut-PA 2248 CG9533-PA 23..505 45..543 474 28.8 Plus
CG43373-PB 1240 CG42513-PB 513..904 78..489 459 29.5 Plus
Ac76E-PA 1307 CG7978-PA 968..1299 728..1085 456 32.1 Plus
Ac76E-PB 1312 CG7978-PB 968..1304 728..1085 456 32.1 Plus
Ac3-PA 1167 CG1506-PA 172..449 164..462 455 32.2 Plus
Ac78C-PD 1694 CG10564-PD 405..728 159..489 447 32.9 Plus
Ac78C-PF 1717 CG10564-PF 428..751 159..489 447 32.9 Plus
Ac78C-PB 1718 CG10564-PB 429..752 159..489 447 32.9 Plus
Ac78C-PE 1727 CG10564-PE 429..752 159..489 447 32.9 Plus
Ac13E-PB 1690 CG9210-PB 65..505 80..466 446 28.6 Plus
Ac13E-PA 1690 CG9210-PA 65..505 80..466 446 28.6 Plus
Ac13E-PC 1703 CG9210-PC 78..518 80..466 446 28.6 Plus
Ac78C-PC 1222 CG10564-PC 1..256 228..489 425 36.1 Plus
rut-PA 2248 CG9533-PA 606..1183 501..1122 396 24.9 Plus
Ac3-PA 1167 CG1506-PA 752..1090 725..1085 382 30.4 Plus
Ac78C-PD 1694 CG10564-PD 1199..1558 706..1090 341 29.3 Plus
Ac78C-PF 1717 CG10564-PF 1222..1581 706..1090 341 29.3 Plus
Ac78C-PB 1718 CG10564-PB 1223..1582 706..1090 341 29.3 Plus
Ac78C-PE 1727 CG10564-PE 1223..1582 706..1090 341 29.3 Plus
Ac78C-PC 1222 CG10564-PC 727..1086 706..1090 341 29.3 Plus
Ac13E-PB 1690 CG9210-PB 1309..1561 792..1083 306 31.6 Plus
Ac13E-PA 1690 CG9210-PA 1309..1561 792..1083 306 31.6 Plus
Ac13E-PC 1703 CG9210-PC 1322..1574 792..1083 306 31.6 Plus
CG3216-PD 1096 CG3216-PD 844..1038 278..462 240 30.3 Plus
CG3216-PC 1161 CG3216-PC 909..1103 278..462 240 30.3 Plus
Gyc88E-PF 1090 CG4154-PF 402..574 294..469 231 29.4 Plus
Gyc88E-PE 1097 CG4154-PE 402..574 294..469 231 29.4 Plus
Gyc88E-PD 1097 CG4154-PD 402..574 294..469 231 29.4 Plus
Gyc32E-PG 1155 CG33114-PG 864..1013 315..461 227 33.3 Plus
Gyc32E-PD 1163 CG33114-PD 872..1021 315..461 227 33.3 Plus
Gyc32E-PB 1191 CG33114-PB 900..1049 315..461 227 33.3 Plus
CG3216-PD 1096 CG3216-PD 831..1064 811..1085 226 26.9 Plus
CG3216-PC 1161 CG3216-PC 896..1129 811..1085 226 26.9 Plus
CG34357-PD 1685 CG34357-PD 1108..1258 314..462 224 30.5 Plus
CG34357-PC 1685 CG34357-PC 1108..1258 314..462 224 30.5 Plus
Gycalpha99B-PA 676 CG1912-PA 462..611 312..461 207 32 Plus
CG31183-PB 1417 CG31183-PB 952..1102 315..462 207 29.8 Plus
CG31183-PA 1417 CG31183-PA 952..1102 315..462 207 29.8 Plus
CG10738-PF 1235 CG10738-PF 903..1056 312..462 203 29.9 Plus
CG10738-PE 1237 CG10738-PE 905..1058 312..462 203 29.9 Plus
CG10738-PC 1248 CG10738-PC 916..1069 312..462 203 29.9 Plus
Ac13E-PB 1690 CG9210-PB 1352..1538 261..461 190 27.1 Plus
Ac13E-PA 1690 CG9210-PA 1352..1538 261..461 190 27.1 Plus
Ac13E-PC 1703 CG9210-PC 1365..1551 261..461 190 27.1 Plus
Gyc32E-PG 1155 CG33114-PG 811..1040 813..1085 185 25.4 Plus
Gyc32E-PD 1163 CG33114-PD 819..1048 813..1085 185 25.4 Plus
Gyc32E-PB 1191 CG33114-PB 847..1076 813..1085 185 25.4 Plus
rut-PA 2248 CG9533-PA 957..1125 310..461 184 27.2 Plus
Ac3-PA 1167 CG1506-PA 879..1155 294..543 183 22.9 Plus
Ac78C-PD 1694 CG10564-PD 1167..1530 104..467 179 21.6 Plus
Ac78C-PF 1717 CG10564-PF 1190..1553 104..467 179 21.6 Plus
Ac78C-PB 1718 CG10564-PB 1191..1554 104..467 179 21.6 Plus
Ac78C-PE 1727 CG10564-PE 1191..1554 104..467 179 21.6 Plus
Ac78C-PC 1222 CG10564-PC 695..1058 104..467 179 21.6 Plus
Gyc88E-PF 1090 CG4154-PF 354..597 812..1090 174 25.3 Plus
Gyc88E-PE 1097 CG4154-PE 354..597 812..1090 174 25.3 Plus
Gyc88E-PD 1097 CG4154-PD 354..597 812..1090 174 25.3 Plus
Ac76E-PA 1307 CG7978-PA 1051..1278 237..466 165 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13944-PA 1086 GI13944-PA 12..1069 30..1093 2325 44 Plus
Dmoj\GI13927-PA 1066 GI13927-PA 1..1046 38..1095 2323 45.1 Plus
Dmoj\GI11367-PA 1085 GI11367-PA 5..1073 23..1097 2320 44 Plus
Dmoj\GI13162-PA 1149 GI13162-PA 26..1133 27..1092 2016 39.7 Plus
Dmoj\GI11385-PA 1012 GI11385-PA 429..1005 521..1099 1296 44.1 Plus
Dmoj\GI11385-PA 1012 GI11385-PA 8..465 20..481 1170 47.8 Plus
Dmoj\GI11385-PA 1012 GI11385-PA 394..445 1008..1059 165 53.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24785-PA 1125 GL24785-PA 11..1087 21..1096 2902 52 Plus
Dper\GL24639-PA 1166 GL24639-PA 29..1156 25..1097 2003 40.1 Plus
Dper\GL24731-PA 997 GL24731-PA 5..690 14..698 1832 50.1 Plus
Dper\GL24732-PA 708 GL24732-PA 11..683 21..702 1656 48.4 Plus
Dper\GL24640-PA 884 GL24640-PA 6..865 238..1097 1295 36.1 Plus
Dper\GL24731-PA 997 GL24731-PA 683..981 764..1109 834 50.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28949-PA 1136 GA28949-PA 5..1120 14..1109 3076 52.2 Plus
Dpse\GA28951-PA 1123 GA28951-PA 11..1095 21..1106 2875 51 Plus
Dpse\GA28911-PA 1125 GA28911-PA 11..1085 21..1094 2872 51.8 Plus
Dpse\GA19077-PA 1166 GA19077-PA 29..1156 25..1097 1995 40 Plus
Dpse\GA16819-PA 1097 GA16819-PA 19..1078 26..1097 1392 34.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10065-PA 1130 GM10065-PA 1..1130 1..1130 5937 96.7 Plus
Dsec\GM10070-PA 1117 GM10070-PA 3..1115 9..1125 3864 64.3 Plus
Dsec\GM10078-PA 1123 GM10078-PA 3..1083 16..1097 2799 51.7 Plus
Dsec\GM10075-PA 755 GM10075-PA 3..731 5..733 2292 59.3 Plus
Dsec\GM14470-PA 949 GM14470-PA 12..941 8..924 1605 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23854-PA 1130 GD23854-PA 1..1130 1..1130 5947 96.9 Plus
Dsim\GD23855-PA 1095 GD23855-PA 3..1093 9..1125 3622 61.2 Plus
Dsim\GD23856-PA 1073 GD23856-PA 3..1016 5..1021 3342 61.7 Plus
Dsim\GD23858-PA 1117 GD23858-PA 3..1077 16..1097 2744 51 Plus
Dsim\GD13671-PA 1161 GD13671-PA 12..1153 8..1097 1985 39.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11622-PA 1099 GJ11622-PA 3..1073 21..1093 2704 49.7 Plus
Dvir\GJ11641-PA 1097 GJ11641-PA 3..1089 12..1117 2646 46.6 Plus
Dvir\GJ11936-PA 1152 GJ11936-PA 22..1152 27..1104 2021 39.9 Plus
Dvir\GJ11937-PA 997 GJ11937-PA 40..952 154..1093 1040 31.1 Plus
Dvir\GJ11335-PA 1302 GJ11335-PA 228..463 227..462 485 40.6 Plus
Dvir\GJ11335-PA 1302 GJ11335-PA 1032..1294 797..1085 423 34.4 Plus
Dvir\GJ11335-PA 1302 GJ11335-PA 1046..1273 237..466 159 23.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15554-PA 1116 GK15554-PA 1..1113 13..1126 2960 50.7 Plus
Dwil\GK12535-PA 1158 GK12535-PA 32..1148 27..1092 1974 40.6 Plus
Dwil\GK12536-PA 931 GK12536-PA 83..904 262..1093 1251 35.5 Plus
Dwil\GK16713-PA 1363 GK16713-PA 234..469 227..462 485 40.6 Plus
Dwil\GK17483-PA 1770 GK17483-PA 444..802 122..489 471 32 Plus
Dwil\GK16713-PA 1363 GK16713-PA 1101..1355 805..1085 420 35.4 Plus
Dwil\GK17483-PA 1770 GK17483-PA 1162..1377 839..1085 360 37.5 Plus
Dwil\GK17483-PA 1770 GK17483-PA 1118..1351 221..461 197 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18605-PA 1129 GE18605-PA 1..1119 1..1119 5503 89.9 Plus
Dyak\GE18606-PA 1120 GE18606-PA 3..1120 5..1125 3726 63.8 Plus
Dyak\GE18607-PA 1115 GE18607-PA 3..1106 5..1108 3693 63.2 Plus
Dyak\GE18608-PA 1120 GE18608-PA 6..1097 19..1111 2854 51.5 Plus
Dyak\GE21209-PA 1162 GE21209-PA 12..1154 8..1097 1999 40 Plus