Clone AT30827 Report

Search the DGRC for AT30827

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:308
Well:27
Vector:pOTB7
Associated Gene/TranscriptPGRP-SA-RA
Protein status:AT30827.pep: gold
Preliminary Size:612
Sequenced Size:1162

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11709 2002-01-01 Sim4 clustering to Release 2
CG11709 2003-01-01 Sim4 clustering to Release 3
CG11709 2003-01-22 Blastp of sequenced clone
PGRP-SA 2008-04-29 Release 5.5 accounting
PGRP-SA 2008-08-15 Release 5.9 accounting
PGRP-SA 2008-12-18 5.12 accounting

Clone Sequence Records

AT30827.complete Sequence

1162 bp (1162 high quality bases) assembled on 2003-01-22

GenBank Submission: AY075293

> AT30827.complete
CAAACAAAAAAAATAAAAATCTAACGCTCTCTGCGGCTGTTATCAGTGAA
CTTCTCGCGAGACTTTCAGCTAATCATTAATTTAGTTTAACTGTTAGTAT
TCGTGTGTACATATCACAAATCTTACTGCTTCTAGGGAAGCATTCGTCAC
TAGCTGAAAAGCGGAAATTCCATCACAGAGATCGGCTTTCAACCCGTTTT
AAATTGTTGTTTGGGCTTTTTGCTTGTCGCTTCGCAAATGTGATGCAAAA
CAAAAAGAACCGAACAAAGAACGCGGAGATTTGCGACGGATCGGAAGATC
TGGAGATGGCTAATGGACGGGAGTCCCCTGTGGCTCTGCGGGATCGTAAG
CTCCAGAAAGCTCGGATCGTTGGCCCTGATAAATCCGGCAGATAGCCCAT
CGAGAGCAGTTCTCATCCAGCCTTAGATCTTAGCACATCAACATCATGCA
GCCGGTTCGATTCGGATCTCCTTGGATTATGGCCATTGGGCTGGTGCTAC
TACTGCTGGCATTCGTCTCCGCCGGAAAGTCGCGTCAGCGTTCGCCAGCC
AATTGCCCCACCATCAAGCTGAAGCGTCAGTGGGGCGGCAAGCCTTCGTT
GGGACTCCACTACCAAGTGCGTCCCATCCGCTATGTGGTCATCCATCACA
CGGTCACCGGCGAGTGCAGCGGACTGCTCAAGTGCGCCGAGATTCTCCAG
AACATGCAGGCGTATCATCAGAACGAGCTGGACTTCAACGATATTAGTTA
CAACTTCCTGATCGGCAACGATGGTATCGTATACGAAGGCACTGGTTGGG
GATTGCGCGGTGCCCACACCTATGGATACAATGCCATTGGCACGGGCATA
GCCTTTATCGGCAACTTTGTGGATAAACTTCCATCGGATGCGGCTCTCCA
GGCGGCCAAAGATCTGCTGGCCTGCGGAGTGCAGCAGGGTGAGCTGAGCG
AGGATTACGCCCTGATCGCCGGCTCCCAGGTGATCAGCACCCAGAGTCCC
GGACTGACTCTATACAACGAGATCCAAGAGTGGCCGCACTGGCTCTCAAA
TCCCTAAATCAACTACAAGTAATTGCAGTAGTCTGCCAGAATGAGCATAT
CAGTTTAGTAAAGTAAATAAACCAATGTTGTTGAGTAAAAAAAAAAAAAA
AAAAAAAAAAAA

AT30827.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RA 1135 PGRP-SA-RA 6..1135 7..1136 5650 100 Plus
RpII215-RA 6896 RpII215-RA 6832..6896 1137..1073 325 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11452733..11453479 7..753 3735 100 Plus
chrX 22417052 chrX 11453717..11453981 872..1136 1325 100 Plus
chrX 22417052 chrX 11453538..11453660 754..876 600 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11561534..11562280 7..753 3735 100 Plus
X 23542271 X 11562518..11562783 872..1137 1330 100 Plus
X 23542271 X 11562339..11562461 754..876 600 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11569632..11570378 7..753 3735 100 Plus
X 23527363 X 11570616..11570881 872..1137 1330 100 Plus
X 23527363 X 11570437..11570559 754..876 600 99.1 Plus
Blast to na_te.dros performed 2019-03-16 05:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 1068..1113 239..194 131 76.1 Minus

AT30827.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:37:26 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11452728..11453479 1..753 99 -> Plus
chrX 11453538..11453656 754..872 100 -> Plus
chrX 11453718..11453981 873..1136 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:31:24 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 446..1057 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:57 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 446..1057 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:27 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 446..1057 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:59 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 446..1057 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:32 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 446..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:10:07 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..1133 1..1134 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:57 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..1133 1..1134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:27 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..1018 116..1133 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:59 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..1133 1..1134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:32 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..1018 116..1133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:26 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
X 11561529..11562280 1..753 99 -> Plus
X 11562339..11562457 754..872 100 -> Plus
X 11562519..11562782 873..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:26 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
X 11561529..11562280 1..753 99 -> Plus
X 11562339..11562457 754..872 100 -> Plus
X 11562519..11562782 873..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:26 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
X 11561529..11562280 1..753 99 -> Plus
X 11562339..11562457 754..872 100 -> Plus
X 11562519..11562782 873..1136 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:27 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11455562..11456313 1..753 99 -> Plus
arm_X 11456372..11456490 754..872 100 -> Plus
arm_X 11456552..11456815 873..1136 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:02 Download gff for AT30827.complete
Subject Subject Range Query Range Percent Splice Strand
X 11569627..11570378 1..753 99 -> Plus
X 11570437..11570555 754..872 100 -> Plus
X 11570617..11570880 873..1136 100   Plus

AT30827.hyp Sequence

Translation from 445 to 1056

> AT30827.hyp
MQPVRFGSPWIMAIGLVLLLLAFVSAGKSRQRSPANCPTIKLKRQWGGKP
SLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDI
SYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAA
LQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWL
SNP*

AT30827.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-PB 203 CG11709-PB 1..203 1..203 1084 100 Plus
PGRP-SA-PA 203 CG11709-PA 1..203 1..203 1084 100 Plus
PGRP-LE-PB 345 CG8995-PB 198..337 60..199 358 49.3 Plus
PGRP-LE-PA 345 CG8995-PA 198..337 60..199 358 49.3 Plus
PGRP-SC2-PA 184 CG14745-PA 22..182 39..199 356 42.9 Plus

AT30827.pep Sequence

Translation from 445 to 1056

> AT30827.pep
MQPVRFGSPWIMAIGLVLLLLAFVSAGKSRQRSPANCPTIKLKRQWGGKP
SLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDI
SYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAA
LQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWL
SNP*

AT30827.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22064-PA 196 GF22064-PA 3..196 11..203 862 83.1 Plus
Dana\GF10681-PA 371 GF10681-PA 62..222 43..202 343 40.4 Plus
Dana\GF10506-PA 187 GF10506-PA 19..184 35..199 332 39.2 Plus
Dana\GF23927-PA 182 GF23927-PA 40..182 60..203 330 43.1 Plus
Dana\GF16643-PA 226 GF16643-PA 1..191 11..199 327 38.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18426-PA 243 GG18426-PA 42..243 1..203 977 90.6 Plus
Dere\GG19370-PA 345 GG19370-PA 198..337 60..199 362 49.3 Plus
Dere\GG15854-PA 190 GG15854-PA 22..190 35..202 356 40.8 Plus
Dere\GG13574-PA 182 GG13574-PA 38..182 58..203 351 45.2 Plus
Dere\GG23381-PA 184 GG23381-PA 22..182 39..199 340 41.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17605-PA 199 GH17605-PA 20..199 24..203 724 71.7 Plus
Dgri\GH20540-PA 184 GH20540-PA 22..182 39..199 371 44.7 Plus
Dgri\GH21355-PA 184 GH21355-PA 26..182 43..199 354 43.3 Plus
Dgri\GH12194-PA 361 GH12194-PA 210..350 59..199 353 47.5 Plus
Dgri\GH21354-PA 184 GH21354-PA 23..182 40..199 352 42.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-PB 203 CG11709-PB 1..203 1..203 1084 100 Plus
PGRP-SA-PA 203 CG11709-PA 1..203 1..203 1084 100 Plus
PGRP-LE-PB 345 CG8995-PB 198..337 60..199 358 49.3 Plus
PGRP-LE-PA 345 CG8995-PA 198..337 60..199 358 49.3 Plus
PGRP-SC2-PA 184 CG14745-PA 22..182 39..199 356 42.9 Plus
PGRP-SB1-PA 190 CG9681-PA 22..190 35..202 346 40.8 Plus
PGRP-SB2-PA 182 CG9697-PA 40..182 60..203 344 44.4 Plus
PGRP-LC-PE 329 CG4432-PE 170..325 45..199 330 42.3 Plus
PGRP-LC-PD 500 CG4432-PD 341..496 45..199 330 42.3 Plus
PGRP-LC-PA 500 CG4432-PA 341..496 45..199 330 42.3 Plus
PGRP-SC1b-PB 185 CG8577-PB 27..183 43..199 323 40.1 Plus
PGRP-SC1b-PA 185 CG8577-PA 27..183 43..199 323 40.1 Plus
PGRP-SC1a-PA 185 CG14746-PA 27..183 43..199 323 40.1 Plus
PGRP-LF-PA 369 CG4437-PA 29..223 16..203 323 35.4 Plus
PGRP-SD-PA 186 CG7496-PA 22..182 40..199 319 41.6 Plus
PGRP-LB-PC 232 CG14704-PC 3..192 13..199 306 36.3 Plus
PGRP-LB-PD 255 CG14704-PD 34..215 25..199 295 36.8 Plus
PGRP-LB-PF 215 CG14704-PF 18..175 43..199 294 38 Plus
PGRP-LB-PE 215 CG14704-PE 18..175 43..199 294 38 Plus
PGRP-LB-PA 215 CG14704-PA 18..175 43..199 294 38 Plus
PGRP-LB-PB 215 CG14704-PB 18..175 43..199 294 38 Plus
PGRP-LC-PJ 340 CG4432-PJ 172..326 46..199 263 36.1 Plus
PGRP-LC-PC 511 CG4432-PC 343..497 46..199 263 36.1 Plus
PGRP-SB2-PB 191 CG9697-PB 40..120 60..141 224 51.2 Plus
PGRP-LA-PF 299 CG32042-PF 117..273 43..199 206 34.2 Plus
PGRP-LA-PE 368 CG32042-PE 186..342 43..199 206 34.2 Plus
PGRP-LC-PK 330 CG4432-PK 186..329 60..199 192 33.3 Plus
PGRP-LC-PI 501 CG4432-PI 357..500 60..199 192 33.3 Plus
PGRP-LC-PH 520 CG4432-PH 376..519 60..199 192 33.3 Plus
PGRP-LC-PB 520 CG4432-PB 376..519 60..199 192 33.3 Plus
PGRP-LA-PG 138 CG32042-PG 16..112 99..199 161 35.6 Plus
PGRP-LA-PC 138 CG32042-PC 16..112 99..199 161 35.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16473-PA 207 GI16473-PA 41..207 37..203 731 79 Plus
Dmoj\GI18809-PA 184 GI18809-PA 26..182 43..199 366 45.2 Plus
Dmoj\GI12108-PA 507 GI12108-PA 314..501 11..199 361 40.8 Plus
Dmoj\GI10922-PA 357 GI10922-PA 209..349 59..199 356 47.5 Plus
Dmoj\GI20770-PA 184 GI20770-PA 26..182 43..199 348 43.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26887-PA 200 GL26887-PA 24..200 26..203 805 83.7 Plus
Dper\GL18052-PA 353 GL18052-PA 205..345 59..199 371 49.6 Plus
Dper\GL26612-PA 185 GL26612-PA 22..182 40..199 338 42.9 Plus
Dper\GL18428-PA 180 GL18428-PA 14..178 35..199 320 39.8 Plus
Dper\GL17120-PA 185 GL17120-PA 27..183 43..199 309 39.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11152-PA 200 GA11152-PA 24..200 26..203 804 83.7 Plus
Dpse\GA13217-PA 184 GA13217-PA 1..182 12..199 350 41.3 Plus
Dpse\GA20392-PA 185 GA20392-PA 22..182 40..199 337 42.9 Plus
Dpse\GA21970-PA 182 GA21970-PA 40..182 60..203 330 41.7 Plus
Dpse\GA29296-PA 163 GA29296-PA 5..161 44..199 325 40.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13088-PA 142 GM13088-PA 1..136 1..137 684 93.4 Plus
Dsec\GM24370-PA 190 GM24370-PA 22..190 35..202 353 40.8 Plus
Dsec\GM25654-PA 182 GM25654-PA 41..182 61..203 349 44.8 Plus
Dsec\GM25129-PA 500 GM25129-PA 341..496 45..199 322 42.3 Plus
Dsec\GM25131-PA 371 GM25131-PA 25..225 11..203 320 36.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\PGRP-SA-PA 202 GD17030-PA 1..202 1..203 1046 97 Plus
Dsim\GD24678-PA 345 GD24678-PA 198..337 60..199 363 49.3 Plus
Dsim\PGRP-SB2-PA 182 GD14659-PA 40..182 60..203 356 45.1 Plus
Dsim\PGRP-SB1-PA 190 GD12445-PA 22..190 35..202 351 40.8 Plus
Dsim\PGRP-SC2-PA 184 GD10595-PA 22..182 39..199 347 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15950-PA 196 GJ15950-PA 4..196 11..203 756 73.6 Plus
Dvir\GJ18565-PA 366 GJ18565-PA 217..357 59..199 358 46.8 Plus
Dvir\GJ12160-PA 191 GJ12160-PA 27..188 39..199 354 41.4 Plus
Dvir\GJ21836-PA 184 GJ21836-PA 22..182 39..199 349 41.6 Plus
Dvir\GJ20505-PA 184 GJ20505-PA 26..182 43..199 339 42 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25449-PA 199 GK25449-PA 1..197 11..203 733 70.1 Plus
Dwil\GK20090-PA 363 GK20090-PA 213..353 59..199 373 49.6 Plus
Dwil\GK21737-PA 185 GK21737-PA 1..183 12..199 364 42.3 Plus
Dwil\GK17343-PA 192 GK17343-PA 11..191 12..201 347 38.2 Plus
Dwil\GK17119-PA 173 GK17119-PA 31..173 60..203 340 44.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\PGRP-SA-PA 202 GE15944-PA 1..202 1..203 928 90.1 Plus
Dyak\GE16017-PA 347 GE16017-PA 198..337 60..199 365 50 Plus
Dyak\GE22193-PA 190 GE22193-PA 12..190 15..202 360 39.2 Plus
Dyak\GE19871-PA 184 GE19871-PA 24..184 43..203 356 43.2 Plus
Dyak\GE19223-PA 184 GE19223-PA 22..182 39..199 347 42.2 Plus