Clone AT31065 Report

Search the DGRC for AT31065

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:310
Well:65
Vector:pOTB7
Associated Gene/TranscriptCG7024-RA
Protein status:AT31065.pep: gold
Preliminary Size:1555
Sequenced Size:1844

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7024 2002-01-01 Sim4 clustering to Release 2
CG7024 2003-01-01 Sim4 clustering to Release 3
CG7024 2003-08-12 Blastp of sequenced clone
CG7024 2008-04-29 Release 5.5 accounting
CG7024 2008-08-15 Release 5.9 accounting
CG7024 2008-12-18 5.12 accounting

Clone Sequence Records

AT31065.complete Sequence

1844 bp (1844 high quality bases) assembled on 2003-08-12

GenBank Submission: BT010310

> AT31065.complete
CCTTCTCGTTCTGTTTAGTGACAGTTGCCATCTCTGTCGATTTGCTTATG
ATTTTACTGTCGGTTTCTTTTCGGTTGAGTACAAATCCATTTTTCAACAA
TTTCCGATCATATTCAAAATTTTAGTGCGTGGCAATTGCCCATTTGGCTA
CAAGCTCATTTTAGTGCCCCGGTGTTTGGGAATTGGTATTCGGGCAAGGG
CCAATGATGAAGTTCAGTTGTGTCCGCGTGGCGATGAGATGCAGTGGAGC
CCACTCCATCCTCGAGAGAAATATGCTCTGCAGGATAATAGGGCGCCACA
AATGTAGCTGTTTGACCCTGGAGAACACGTTCAAGTGCTACGACCTGGAG
AATGGACCCACAATGGACGTGGAGCTGTCCAGGGAGGACGCCCTGACGAT
GTACACGCAGATGCTGGAACTGCGCCGGTTCGAGACGGTGGCGGGCAACT
ACTATAAGGAGCGAAAAATCCGCGGCTTCTGCCATTTATATAACGGACAG
GAGGCCGTCGCTGTTGGCATGAAGCAGCGTTTGAGGTCCTGCGACTCGGT
CATAACGGCATACCGTTGTCATGCCTGGACCTATTTAATGGGTGTTTCCC
TTTACGAAATAATGGCGGAATTGTTCGGAGTTCGAACTGGATGCAGCCGG
GGCAAAGGTGGCTCTATGCACATGTACAGCGATAAGTTTTATGGCGGCAA
TGGTATCGTTGGTGCCCAAGTTCCGCTCGGCGCGGGAATTGGCCTCGCGC
ACAGTTATCGCAAGGACAACGGCGTGTCGGTGGTCCTTTATGGTGATGGT
GCCGCCAATCAGGGCCAGATCTTTGAGTCCTTCAACATGGCCAAGCTGTG
GTGCTTGCCCTGCATATTCGTTTGCGAGAACAATCACTACGGCATGGGCA
CCCACGTTAAGCGGGCCTCTGCCATGACGGAGTTCTACATGCGTGGCCAA
TATATCCCTGGTCTTTGGGTCGATGGCAATCAGGTGCTGGCCGTGCGTAG
CGCCACCCAATTCGCCGTGGACCATGCCCTCAAGCACGGACCCATTGTGC
TCGAGATGAGCACCTATCGCTATGTGGGTCACTCCATGTCCGATCCGGGT
ACATCGTATCGCTCGAGAGAAGAAGTCCAATCGACGAGGGAGAAACGCGA
TCCGATTACAAGTTTCCGCAGTCAGATCATCGCCTTGTGTCTCGCCGACG
AGGAGGAGCTGAAGGCCCTGGATGATAAGACTAGGAAGCAGGTGGATAGC
ATTTGCAAGAAAGCCACCACCGACAGGGAGGTAGAACTTGATGAGCTGCA
CACCGATATCTATGCCAAGAATGTGGATGGTAAGATCCGCGGCGTGTCCG
GATTCCATTTAGAGCACATCAAGCTGGCGGAGGTGTGCTTTGGCAAGCCG
AAGAAGACGCCGGCCAGCGAGATCAACGACGTGCCAGTGGGCGCAGAGAT
TGACGTGGCCAAGGCCAAGGAAAGGAAGGCCAAGCAGGATGCCAAGAAGG
CCAAGGAAGCCAAGGAACCTAAAGGTGGCGACAAGAAGGGCGCCGACGCC
AAGCAGCCCAAAGGCGAGGGCGACGATGGCGATAAGAAGCCAAAACCAGC
CGCACAGCCGCCCACCAAGGCGCCACCCGCTCCCAAAAAGTAGTATGCCC
CCACGGAATGGAACACCATCGTTAGCTTTTCAGCAAGTTGAAAGTTTCGC
CAGAGTGCTTTAGCTGGTTTCTGAACCCAAAAGACGCAAGCAAATTTATG
TAAAACATATACAGTATGATTCCGTTTTGAGTTGGAAATGGCGAACTTAA
AATATATATTAATTAATTATATTAGTAAAAAAAAAAAAAAAAAA

AT31065.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7024-RA 1897 CG7024-RA 72..1897 1..1826 9100 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4598793..4600292 327..1826 7500 100 Plus
chrX 22417052 chrX 4598149..4598474 1..326 1630 100 Plus
chrX 22417052 chrX 4596658..4596903 647..892 215 74.3 Plus
chrX 22417052 chrX 4597070..4597198 984..1112 195 76.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4706005..4707506 327..1828 7495 99.9 Plus
X 23542271 X 4705361..4705686 1..326 1615 99.7 Plus
X 23542271 X 4704287..4704415 984..1112 195 76.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4714103..4715604 327..1828 7495 99.9 Plus
X 23527363 X 4713459..4713784 1..326 1615 99.6 Plus
Blast to na_te.dros performed on 2019-03-16 02:56:32 has no hits.

AT31065.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:57:42 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4598149..4598474 1..326 100 -> Plus
chrX 4598793..4600292 327..1826 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:31:51 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 1..1440 204..1643 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:08:31 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 1..1440 204..1643 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:18 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 1..1440 204..1643 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:50 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 1..1440 204..1643 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:41 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 1..1440 204..1643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:26 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 53..1878 1..1826 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:08:31 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 53..1878 1..1826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:18 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 53..1878 1..1826 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:50 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 53..1878 1..1826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:41 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7024-RA 53..1878 1..1826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:42 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
X 4705361..4705686 1..326 99 -> Plus
X 4706005..4707504 327..1826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:42 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
X 4705361..4705686 1..326 99 -> Plus
X 4706005..4707504 327..1826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:42 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
X 4705361..4705686 1..326 99 -> Plus
X 4706005..4707504 327..1826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:18 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4599394..4599719 1..326 99 -> Plus
arm_X 4600038..4601537 327..1826 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:12 Download gff for AT31065.complete
Subject Subject Range Query Range Percent Splice Strand
X 4714103..4715602 327..1826 99   Plus
X 4713459..4713784 1..326 99 -> Plus

AT31065.pep Sequence

Translation from 203 to 1642

> AT31065.pep
MMKFSCVRVAMRCSGAHSILERNMLCRIIGRHKCSCLTLENTFKCYDLEN
GPTMDVELSREDALTMYTQMLELRRFETVAGNYYKERKIRGFCHLYNGQE
AVAVGMKQRLRSCDSVITAYRCHAWTYLMGVSLYEIMAELFGVRTGCSRG
KGGSMHMYSDKFYGGNGIVGAQVPLGAGIGLAHSYRKDNGVSVVLYGDGA
ANQGQIFESFNMAKLWCLPCIFVCENNHYGMGTHVKRASAMTEFYMRGQY
IPGLWVDGNQVLAVRSATQFAVDHALKHGPIVLEMSTYRYVGHSMSDPGT
SYRSREEVQSTREKRDPITSFRSQIIALCLADEEELKALDDKTRKQVDSI
CKKATTDREVELDELHTDIYAKNVDGKIRGVSGFHLEHIKLAEVCFGKPK
KTPASEINDVPVGAEIDVAKAKERKAKQDAKKAKEAKEPKGGDKKGADAK
QPKGEGDDGDKKPKPAAQPPTKAPPAPKK*

AT31065.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22275-PA 520 GF22275-PA 7..425 7..413 1657 72.6 Plus
Dana\GF22274-PA 399 GF22274-PA 37..392 35..390 1177 59.3 Plus
Dana\GF15055-PA 403 GF15055-PA 56..397 50..391 1019 54.4 Plus
Dana\GF18476-PA 439 GF18476-PA 84..409 53..372 275 28.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18723-PA 480 GG18723-PA 1..462 1..468 2151 89.1 Plus
Dere\GG18722-PA 440 GG18722-PA 78..433 35..390 1169 58.4 Plus
Dere\GG16874-PA 439 GG16874-PA 84..394 53..353 253 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20215-PA 513 GH20215-PA 30..473 34..474 1539 65.8 Plus
Dgri\GH12828-PA 399 GH12828-PA 45..392 43..390 1200 61.5 Plus
Dgri\GH18279-PA 439 GH18279-PA 86..384 55..347 262 28.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7024-PA 479 CG7024-PA 1..479 1..479 2542 100 Plus
Pdha-PD 399 CG7010-PD 45..392 43..390 1142 59.8 Plus
Pdha-PA 399 CG7010-PA 45..392 43..390 1142 59.8 Plus
Pdha-PC 443 CG7010-PC 89..436 43..390 1142 59.8 Plus
Pdha-PB 328 CG7010-PB 1..321 70..390 1075 61.1 Plus
CG8199-PA 439 CG8199-PA 84..436 53..393 253 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14911-PA 461 GI14911-PA 7..378 42..413 1519 74.2 Plus
Dmoj\GI14910-PA 399 GI14910-PA 45..392 43..390 1154 58.6 Plus
Dmoj\GI14124-PA 420 GI14124-PA 64..410 43..388 1028 54.2 Plus
Dmoj\GI24087-PA 435 GI24087-PA 82..380 55..347 263 29.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13095-PA 540 GL13095-PA 50..435 31..413 1623 74.9 Plus
Dper\GL13094-PA 399 GL13094-PA 45..392 43..390 1159 58.6 Plus
Dper\GL18702-PA 414 GL18702-PA 54..406 36..388 969 52.4 Plus
Dper\GL22326-PA 439 GL22326-PA 84..409 53..372 264 27.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20040-PA 533 GA20040-PA 50..435 31..413 1625 74.9 Plus
Dpse\GA20028-PA 399 GA20028-PA 45..392 43..390 1160 58.6 Plus
Dpse\GA25763-PA 414 GA25763-PA 54..406 36..388 967 51.8 Plus
Dpse\GA20891-PA 439 GA20891-PA 84..409 53..372 264 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12362-PA 475 GM12362-PA 1..475 1..479 2499 97.3 Plus
Dsec\GM12361-PA 441 GM12361-PA 87..434 43..390 1167 59.8 Plus
Dsec\GM23814-PA 439 GM23814-PA 84..431 53..388 260 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16703-PA 476 GD16703-PA 1..476 1..479 2521 97.7 Plus
Dsim\GD16702-PA 392 GD16702-PA 45..385 43..390 1121 58 Plus
Dsim\GD18623-PA 439 GD18623-PA 84..434 53..391 256 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18943-PA 548 GJ18943-PA 45..482 34..467 1614 68 Plus
Dvir\GJ18942-PA 399 GJ18942-PA 45..392 43..390 1146 58.6 Plus
Dvir\GJ17759-PA 420 GJ17759-PA 64..412 43..390 1032 53.9 Plus
Dvir\GJ10905-PA 437 GJ10905-PA 84..382 55..347 254 28.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25307-PA 632 GK25307-PA 44..503 31..473 1651 67.5 Plus
Dwil\GK25306-PA 474 GK25306-PA 120..467 43..390 1175 60.1 Plus
Dwil\GK15549-PA 430 GK15549-PA 71..424 37..390 1071 55.1 Plus
Dwil\GK11824-PA 439 GK11824-PA 84..409 53..372 266 27.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16362-PA 485 GE16362-PA 1..467 1..468 2220 88.1 Plus
Dyak\GE16361-PA 438 GE16361-PA 84..431 43..390 1168 59.8 Plus
Dyak\GE25960-PA 439 GE25960-PA 84..394 53..353 246 28.1 Plus

AT31065.hyp Sequence

Translation from 203 to 1642

> AT31065.hyp
MMKFSCVRVAMRCSGAHSILERNMLCRIIGRHKCSCLTLENTFKCYDLEN
GPTMDVELSREDALTMYTQMLELRRFETVAGNYYKERKIRGFCHLYNGQE
AVAVGMKQRLRSCDSVITAYRCHAWTYLMGVSLYEIMAELFGVRTGCSRG
KGGSMHMYSDKFYGGNGIVGAQVPLGAGIGLAHSYRKDNGVSVVLYGDGA
ANQGQIFESFNMAKLWCLPCIFVCENNHYGMGTHVKRASAMTEFYMRGQY
IPGLWVDGNQVLAVRSATQFAVDHALKHGPIVLEMSTYRYVGHSMSDPGT
SYRSREEVQSTREKRDPITSFRSQIIALCLADEEELKALDDKTRKQVDSI
CKKATTDREVELDELHTDIYAKNVDGKIRGVSGFHLEHIKLAEVCFGKPK
KTPASEINDVPVGAEIDVAKAKERKAKQDAKKAKEAKEPKGGDKKGADAK
QPKGEGDDGDKKPKPAAQPPTKAPPAPKK*

AT31065.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7024-PA 479 CG7024-PA 1..479 1..479 2542 100 Plus
l(1)G0334-PD 399 CG7010-PD 45..392 43..390 1142 59.8 Plus
l(1)G0334-PA 399 CG7010-PA 45..392 43..390 1142 59.8 Plus
l(1)G0334-PC 443 CG7010-PC 89..436 43..390 1142 59.8 Plus
l(1)G0334-PB 328 CG7010-PB 1..321 70..390 1075 61.1 Plus