Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT31162.complete Sequence
1134 bp (1134 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089487
> AT31162.complete
AATTGTAACATAACACTTTTTGCCCACAGTACACCCACCGCCTTGTTAAT
CAAATATATTCATATTTAATATACATGTTCATAGCACCCAGCAGGTTCCC
ACAACGGGGGTGGTGGTATCAACGCGCAGAAAGATGAGCAGGCCAAATCC
CACGCCACGTTCATCGACGGGTCTACGCAAACCGACTGGTCAAAGATCAA
CACCTCCACCCAGGCCACCACCTCATGTTCCCGCTCCTGCTCCACCACCG
CATGAGCCTGCGAAACCATATGGAGAATCCCCGGGCCTGCTGAGCCCGGT
CGCATCGTCGGGTCCTTTGCGCCAACGCTCTTCTGTGCACCTGAGGAAGA
AACACCTCGGTTGGGTCTACTTGATCCACGCGGTTCTATCGGCAAGTGCA
GTAATTCAGCTTGTGGTCCTGCGGCTCTGCAATAAGGACTTCGGGGAGCT
AATTAGCCCATCGGTGCCCAGCTTCGTGTGGCTGCTCCTGGCCGTGGGAT
GTGTGCTGATCATGGCCTACGTGTACCTGGCCAACCAGTGTCCGTGCAAT
GGTCTGCTGGCCATTGTCATCGTGGAGGTGATAGTGATATTTGTGAATTG
CCACCGGTGGGCGCGTCTATCGATGCTCTGGATGACTGGTGTCCTGTCAC
TCGTGCTGGCCCTGAACGTCATGCTCTACTTGATGGGCGTCTATCTGCCG
CTGAAAATACTGCCCGGTAGCATCTTCATGATCGTCCTCACATTCTGTTG
CATAGCGATTGTCGTTTCGATCTACTTGATTGTGTATCTAAACGGCAATC
GCTATATAATGCGATACGTCTCGATGGTCAGTCTGATCTACGTGGCTAGT
CTCATCCTCTTCACCATCACCGTTATCCACCAGCGAAGATTTGAGCATAC
GGATCGCACCGAATATGTCCTGCAGGCCACCGTTCTGGCCATGCTGTTCG
TCTATATGATTCACCCACTCTCAACTATGGTGCGATTTGGGCAGTTTTTG
GTGGACCATGTATAATATAAAATTGTTGGAAGTGTATCATCATATCTAAT
ATAGTCTTAAGAAATGTAATATTGCCCAAATTCCTATATATACATATATA
TTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AT31162.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4073-RA | 1104 | CG4073-RA | 1..1104 | 1..1104 | 5475 | 99.7 | Plus |
CG4073.a | 1047 | CG4073.a | 1..826 | 1..826 | 4115 | 99.8 | Plus |
CG4073.a | 1047 | CG4073.a | 826..1047 | 883..1104 | 1080 | 99 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 6540342..6541445 | 1..1104 | 5520 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10714798..10715902 | 1..1105 | 5480 | 99.7 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 10455629..10456733 | 1..1105 | 5480 | 99.7 | Plus |
Blast to na_te.dros performed on 2019-03-16 12:52:10 has no hits.
AT31162.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:27 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 6540342..6541445 | 1..1104 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:31:59 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..882 | 134..1015 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:45:17 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..882 | 134..1015 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:53 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..882 | 134..1015 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:13:43 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..882 | 134..1015 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:20 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..882 | 134..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:45 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..1102 | 1..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:45:17 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..1102 | 1..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:53 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..1104 | 1..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:13:44 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..1102 | 1..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:20 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4073-RA | 1..1104 | 1..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:27 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10714798..10715901 | 1..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:27 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10714798..10715901 | 1..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:27 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10714798..10715901 | 1..1104 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:53 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6540520..6541623 | 1..1104 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:38 Download gff for
AT31162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10455629..10456732 | 1..1104 | 99 | | Plus |
AT31162.pep Sequence
Translation from 133 to 1014
> AT31162.pep
MSRPNPTPRSSTGLRKPTGQRSTPPPRPPPHVPAPAPPPHEPAKPYGESP
GLLSPVASSGPLRQRSSVHLRKKHLGWVYLIHAVLSASAVIQLVVLRLCN
KDFGELISPSVPSFVWLLLAVGCVLIMAYVYLANQCPCNGLLAIVIVEVI
VIFVNCHRWARLSMLWMTGVLSLVLALNVMLYLMGVYLPLKILPGSIFMI
VLTFCCIAIVVSIYLIVYLNGNRYIMRYVSMVSLIYVASLILFTITVIHQ
RRFEHTDRTEYVLQATVLAMLFVYMIHPLSTMVRFGQFLVDHV*
AT31162.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF17548-PA | 227 | GF17548-PA | 7..222 | 71..286 | 439 | 44 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17650-PA | 297 | GG17650-PA | 1..297 | 1..293 | 1052 | 73.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4073-PA | 293 | CG4073-PA | 1..293 | 1..293 | 1522 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12627-PA | 254 | GL12627-PA | 13..226 | 71..286 | 279 | 31.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA17937-PA | 254 | GA17937-PA | 2..226 | 57..286 | 278 | 30.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM23893-PA | 294 | GM23893-PA | 1..294 | 1..293 | 1239 | 92.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18704-PA | 294 | GD18704-PA | 1..294 | 1..293 | 1201 | 86.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE26045-PA | 291 | GE26045-PA | 1..291 | 1..293 | 885 | 66.8 | Plus |
AT31162.hyp Sequence
Translation from 133 to 1014
> AT31162.hyp
MSRPNPTPRSSTGLRKPTGQRSTPPPRPPPHVPAPAPPPHEPAKPYGESP
GLLSPVASSGPLRQRSSVHLRKKHLGWVYLIHAVLSASAVIQLVVLRLCN
KDFGELISPSVPSFVWLLLAVGCVLIMAYVYLANQCPCNGLLAIVIVEVI
VIFVNCHRWARLSMLWMTGVLSLVLALNVMLYLMGVYLPLKILPGSIFMI
VLTFCCIAIVVSIYLIVYLNGNRYIMRYVSMVSLIYVASLILFTITVIHQ
RRFEHTDRTEYVLQATVLAMLFVYMIHPLSTMVRFGQFLVDHV*
AT31162.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4073-PA | 293 | CG4073-PA | 1..293 | 1..293 | 1522 | 100 | Plus |