Clone AT31245 Report

Search the DGRC for AT31245

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:312
Well:45
Vector:pOTB7
Associated Gene/TranscriptCG32487-RA
Protein status:AT31245.pep: gold
Sequenced Size:1079

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32487 2003-01-01 Sim4 clustering to Release 3
CG32487 2008-04-29 Release 5.5 accounting
CG32487 2008-04-29 Picked prior to 5.5
CG32487 2008-08-15 Release 5.9 accounting
CG32487 2008-12-18 5.12 accounting

Clone Sequence Records

AT31245.complete Sequence

1079 bp assembled on 2007-10-25

GenBank Submission: BT031092

> AT31245.complete
GTTTTCCACTCAAAAACGTAATGCCCCCACTTGAATTAAACATGAATTTG
GCCCTAAATAAGACTTTCCAGAAGCGTGGATGTCAAATTCTTGGCCTCAA
CAAGTACGGTATACAGCAGTGGCTGAAGACAATCGACACGATCATATTCG
ATGGAAACGGTGTCCTGTGGAGCCACGGCAAGGTCCTTGAAAATGCAGCC
GAGACGTTTAACGCACTGCGTGCCATGGGAAAGAAGGCCTTTATTTGCAC
CAATAACTCAGTGACTTCGGTCGAGGGCATCTGCAAGTATGCCCAGGAAA
TGGGTTTCTTGGTGGCCAAGAATGAGATCCTTTCCTCGGTCCAAACTTTA
GCCAAATTTATGAAGGAGAAAAAGTTTAAGAAAAAGTGCTACGTAGTGGG
CGGCCAGGGAATCGTCGACGAATTAAAGTTGGTAGGAATCGAGTCCCTGC
CCTTGGATCATTCCTCTCTGCAGGGCTTCTCTATGCCAGATCACATCCAC
AGTATCTACTTGGATCCCAATGTGGGTGCTGTGGTCGTGGGATCTGACAA
GGATTTTAATACAATCAAGCTGACAAAGGCGTGTTGCTATCTCAGAGACA
GCGAGGTAATGTTTGTGGCCACAAGTCGCGATGCGGCACTTCCGGCGGCT
CCAGGACGAATGGTTCCTTCCGCCGGAGTGATGGTGGCTGCCATTCAGGC
GGCCAGTCAACGTATGCCCTTCACTTGTGGAAAACCCAATCCGTACATGT
GCATCGACTTGATGCAAAAGGGAGTTATTCAGCCGGACAGGACTTTGATT
ATAGGAGACACCATGTGCACAGATATCCTTTTGGGCTACAAGTGTGGCTT
CCAAACCCTTTTGGTGGGCACCGGGGTTAACAGCTATCAGGATGCCATTG
AGGCTCAGGGATCTAAGGCTCCATTACTATATCAGCAAGTTCCTGATCTA
TATATGCCCAAACTATCCAATCTGTTGCCATTTTTATCTTCTCGAAATAG
ATAATTTGTATGGATTTCCAATAAAATCAATAGTTCGGTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT31245.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32487-RA 1040 CG32487-RA 1..1040 1..1040 5110 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3015838..3016648 811..1 3965 99.3 Minus
chr3L 24539361 chr3L 3015536..3015768 1040..808 1105 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3016446..3017256 811..1 4025 99.8 Minus
3L 28110227 3L 3016149..3016382 1041..808 1095 97.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3016446..3017256 811..1 4025 99.7 Minus
3L 28103327 3L 3016149..3016382 1041..808 1095 97.8 Minus
Blast to na_te.dros performed 2019-03-16 02:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5302..5334 352..384 111 81.8 Plus

AT31245.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:47:21 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3015536..3015764 812..1040 98 <- Minus
chr3L 3015838..3016648 1..811 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:32:05 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:01:33 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:28 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:57 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:20:52 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:45:22 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:01:32 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..1040 1..1040 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:28 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..1040 1..1040 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:58 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..963 42..1004 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:20:52 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
CG32487-RA 1..1040 1..1040 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:21 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3016150..3016378 812..1040 98 <- Minus
3L 3016446..3017256 1..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:21 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3016150..3016378 812..1040 98 <- Minus
3L 3016446..3017256 1..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:47:21 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3016150..3016378 812..1040 98 <- Minus
3L 3016446..3017256 1..811 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:28 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3016150..3016378 812..1040 98 <- Minus
arm_3L 3016446..3017256 1..811 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:53:27 Download gff for AT31245.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3016150..3016378 812..1040 98 <- Minus
3L 3016446..3017256 1..811 99   Minus

AT31245.hyp Sequence

Translation from 2 to 1003

> AT31245.hyp
FPLKNVIPPLELNMNLALNKTFQKRGCQILGLNKYGIQQWLKTIDTIIFD
GNGVLWSHGKVLENAAETFNALRAMGKKAFICTNNSVTSVEGICKYAQEM
GFLVAKNEILSSVQTLAKFMKEKKFKKKCYVVGGQGIVDELKLVGIESLP
LDHSSLQGFSMPDHIHSIYLDPNVGAVVVGSDKDFNTIKLTKACCYLRDS
EVMFVATSRDAALPAAPGRMVPSAGVMVAAIQAASQRMPFTCGKPNPYMC
IDLMQKGVIQPDRTLIIGDTMCTDILLGYKCGFQTLLVGTGVNSYQDAIE
AQGSKAPLLYQQVPDLYMPKLSNLLPFLSSRNR*

AT31245.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32487-PA 320 CG32487-PA 1..320 14..333 1662 100 Plus
CG5567-PA 330 CG5567-PA 18..320 24..326 611 40.5 Plus
CG32488-PB 307 CG32488-PB 12..306 32..328 564 39.7 Plus
CG32488-PA 307 CG32488-PA 12..306 32..328 564 39.7 Plus
CG11291-PA 308 CG11291-PA 12..306 32..328 461 35.9 Plus

AT31245.pep Sequence

Translation from 20 to 1003

> AT31245.pep
MPPLELNMNLALNKTFQKRGCQILGLNKYGIQQWLKTIDTIIFDGNGVLW
SHGKVLENAAETFNALRAMGKKAFICTNNSVTSVEGICKYAQEMGFLVAK
NEILSSVQTLAKFMKEKKFKKKCYVVGGQGIVDELKLVGIESLPLDHSSL
QGFSMPDHIHSIYLDPNVGAVVVGSDKDFNTIKLTKACCYLRDSEVMFVA
TSRDAALPAAPGRMVPSAGVMVAAIQAASQRMPFTCGKPNPYMCIDLMQK
GVIQPDRTLIIGDTMCTDILLGYKCGFQTLLVGTGVNSYQDAIEAQGSKA
PLLYQQVPDLYMPKLSNLLPFLSSRNR*

AT31245.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10230-PA 309 GF10230-PA 1..295 8..306 990 61.9 Plus
Dana\GF25232-PA 316 GF25232-PA 3..307 18..322 650 42.3 Plus
Dana\GF10231-PA 308 GF10231-PA 2..308 16..323 584 38.2 Plus
Dana\GF12617-PA 318 GF12617-PA 3..304 18..322 452 32.4 Plus
Dana\GF25233-PA 315 GF25233-PA 12..315 26..322 384 30.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14489-PA 320 GG14489-PA 1..320 8..327 1579 90.9 Plus
Dere\GG15774-PA 315 GG15774-PA 3..305 18..320 641 40.8 Plus
Dere\GG14490-PA 307 GG14490-PA 2..306 16..322 594 39 Plus
Dere\GG22174-PA 314 GG22174-PA 2..306 16..322 489 34.6 Plus
Dere\GG15776-PA 315 GG15776-PA 8..315 22..322 402 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23184-PA 319 GH23184-PA 7..318 15..326 1026 57.7 Plus
Dgri\GH14574-PA 319 GH14574-PA 7..318 15..326 1026 57.7 Plus
Dgri\GH14463-PA 316 GH14463-PA 2..307 16..322 636 39.4 Plus
Dgri\GH14576-PA 309 GH14576-PA 2..301 16..315 593 39.9 Plus
Dgri\GH14464-PA 314 GH14464-PA 9..314 23..322 381 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32487-PA 320 CG32487-PA 1..320 8..327 1662 100 Plus
CG5567-PA 330 CG5567-PA 18..320 18..320 611 40.5 Plus
CG32488-PB 307 CG32488-PB 12..306 26..322 564 39.7 Plus
CG32488-PA 307 CG32488-PA 12..306 26..322 564 39.7 Plus
CG11291-PA 308 CG11291-PA 12..306 26..322 461 35.9 Plus
CG5577-PB 315 CG5577-PB 9..315 23..322 382 31.3 Plus
CG5577-PA 315 CG5577-PA 9..315 23..322 382 31.3 Plus
CG15739-PB 308 CG15739-PB 7..300 23..322 313 28.4 Plus
CG15739-PA 308 CG15739-PA 7..300 23..322 313 28.4 Plus
CG10352-PB 315 CG10352-PB 17..289 33..309 250 26.8 Plus
CG2680-PB 305 CG2680-PB 7..302 23..324 240 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13899-PA 314 GI13899-PA 3..314 16..327 961 55.1 Plus
Dmoj\GI13608-PA 316 GI13608-PA 2..305 16..320 620 39.3 Plus
Dmoj\GI13900-PA 307 GI13900-PA 2..307 16..322 565 36.9 Plus
Dmoj\GI13609-PA 310 GI13609-PA 2..310 16..322 442 35.5 Plus
Dmoj\GI10972-PA 323 GI10972-PA 16..314 18..322 300 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18197-PA 321 GL18197-PA 1..320 8..326 975 58.8 Plus
Dper\GL13741-PA 298 GL13741-PA 1..297 8..326 847 53.4 Plus
Dper\GL13742-PA 308 GL13742-PA 3..307 18..322 605 39.5 Plus
Dper\GL16692-PA 317 GL16692-PA 3..310 18..326 596 39 Plus
Dper\GL22743-PA 314 GL22743-PA 5..309 18..322 594 40.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16941-PA 321 GA16941-PA 1..320 8..326 977 58.8 Plus
Dpse\GA16942-PA 308 GA16942-PA 3..307 18..322 614 39.9 Plus
Dpse\GA18976-PA 314 GA18976-PA 5..309 18..322 594 40.9 Plus
Dpse\GA24194-PA 336 GA24194-PA 3..307 18..322 556 39.9 Plus
Dpse\GA18982-PA 313 GA18982-PA 9..313 23..322 442 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14092-PA 320 GM14092-PA 1..320 8..327 1664 96.9 Plus
Dsec\GM24299-PA 315 GM24299-PA 3..305 18..320 639 40.8 Plus
Dsec\GM14093-PA 307 GM14093-PA 2..306 16..322 582 37.8 Plus
Dsec\GM24300-PA 315 GM24300-PA 8..315 22..322 394 31.5 Plus
Dsec\GM13116-PA 308 GM13116-PA 6..300 22..322 324 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13364-PA 320 GD13364-PA 1..320 8..327 1665 96.9 Plus
Dsim\GD12368-PA 315 GD12368-PA 3..305 18..320 639 40.8 Plus
Dsim\GD13365-PA 307 GD13365-PA 2..306 16..322 581 37.8 Plus
Dsim\GD11653-PA 308 GD11653-PA 12..306 26..322 470 35.9 Plus
Dsim\GD12369-PA 315 GD12369-PA 8..315 22..322 405 31.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11756-PA 321 GJ11756-PA 1..320 8..326 976 54.7 Plus
Dvir\GJ11757-PA 308 GJ11757-PA 2..308 16..323 641 41.2 Plus
Dvir\GJ13944-PA 316 GJ13944-PA 2..305 16..320 611 39.7 Plus
Dvir\GJ13945-PA 310 GJ13945-PA 2..310 16..322 454 35.5 Plus
Dvir\GJ18530-PA 311 GJ18530-PA 8..304 22..324 281 26.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16579-PA 323 GK16579-PA 1..323 8..327 1042 59.8 Plus
Dwil\GK17623-PA 311 GK17623-PA 2..310 16..322 655 41.8 Plus
Dwil\GK21181-PA 318 GK21181-PA 5..309 18..322 626 40.5 Plus
Dwil\GK20804-PA 298 GK20804-PA 2..294 16..309 583 41.8 Plus
Dwil\GK10443-PA 313 GK10443-PA 8..313 22..322 392 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21678-PA 320 GE21678-PA 1..320 8..327 1559 89.4 Plus
Dyak\GE22109-PA 315 GE22109-PA 2..305 16..320 644 40.3 Plus
Dyak\GE21679-PA 307 GE21679-PA 2..306 16..322 599 40 Plus
Dyak\GE14167-PA 311 GE14167-PA 2..308 16..324 497 35 Plus
Dyak\GE22110-PA 315 GE22110-PA 8..315 22..322 402 31.5 Plus