Clone AT31457 Report

Search the DGRC for AT31457

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:314
Well:57
Vector:pOTB7
Associated Gene/TranscriptCG13322-RA
Protein status:AT31457.pep: gold
Preliminary Size:1441
Sequenced Size:2020

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13322 2002-01-01 Sim4 clustering to Release 2
CG13322 2003-01-01 Sim4 clustering to Release 3
CG13322 2003-01-22 Blastp of sequenced clone
CG13322 2008-04-29 Release 5.5 accounting
CG13322 2008-08-15 Release 5.9 accounting
CG13322 2008-12-18 5.12 accounting

Clone Sequence Records

AT31457.complete Sequence

2020 bp (2020 high quality bases) assembled on 2003-01-22

GenBank Submission: AY075303

> AT31457.complete
CAAGTGAAAAAGCAAGATAAATCAAATTAAAAATATTGTAAAAAATTGTA
GTTAAACACGCGCTGGAGCACGGTGAACTGAAAATGTGAATGAAAACCAT
CAATAGAGAGAGACGAGCGCGATTTGGTGGCACCAAATGCTGCAGTTGCA
ACCTGCACATGTATGTGTATACTGACAACAAAGAATCGGAATCGGAATCG
TACTTGTTTGTACTCGCACAGGACGTACTTGGAATCGGAATCGGAATAGC
CACTACCATTTGCCAGAGGAGGGAATCGCAGTGCCAATGCATAGTTAATA
AATTCCCCAGAAGCTATACGACCAGCAGACCTCAATTGCAATTGCACGCC
CCTTGACAAATCACAGTGTCTCAGCCAAAACGAAACTGGAAGCCATCGAG
TGCTCCCGTTAAGCAAGCAACTGCAGGCGGAGCACGGGGGAGGAGTAGGA
CCTGGTGGTGCACCAAGCACGCCCGCACTATGGGCAATTGCCTGAAATGC
TTCCAGTCTGCCGCCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAA
TTCACACAATTCCAATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAA
ATTGCTACGAATCGGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCC
TTAGAAACCGATGAACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAA
AGCAAACAATTGTGATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGC
TTAATGGCAGTGCGCCCACCATGAGCGATATCATAACAACTGCTGTCCAG
GAATCGATGGAGGTATCGCACCAAACGCTGAGCAAACTATTCGATGTGTA
CAAAGATCCCGACGACGAGGAGATGATACTCACGGACGGCATCGAGCGAC
TGTGCAATGACCTCAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTG
GCCTGGTGCCTGGATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTT
CATTGAGGGTCTGCATAAGATGAGGGCGGACACAATAGACAGTATCCGGG
TGCGGCTGGAGCAGACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTC
AAGCAGTTGTACCGCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCG
CGTCCTCTCTCTGGAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTG
TACAAACACCTGATCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCAC
CCGAATATTCGCCGCATACCGAAGGATACATGGAACATGTACCTCAATTT
TACGGAACAATGTGATATACAAAATTACGATGATACCGAAGCGTGGCCCA
GCCTCTTCGACGACTTTGTCGACTACGAGAAAAGCCGGGCGCTGGTTTCC
TCGGGCATCCACGACGATGACAACAACAACGACGATCCCCTGCAGAGCCA
CGTGAAGGCCGAGGATCCGGGTCTTGTGTCATAGTAGCCAGTCTCCAGTC
TCTTCAGGGCCAAGCAACATTCAACTCGCCAATATAAATTAAAGAATGTA
CATTTTCATCTATACTGACCACTCGCTCTCTCTAGCTGCTGCTTAAGATC
CCCTGTGAAAGTAGAAAACTTTAAACACCCGTGGCCACTGAAAACGAACA
ATGCGGTGCTGGCGCTGCTTGAGGACGGACTCTCCAACTGCCATCATTAG
CCAGCTCTTATTATGGCTGGCCAACATTCTGGCCGGAGCAACAACGGACG
CATTTGTTTATGTAATTAAAGACTTATCGACAAGAATTTTGGAAAAGCTC
AATCATCGGAAACCACATGTGTATATAACTAATTGACTTGAAGGCGGAGC
AGAAGGTAGACCGTATAATATTTAGCAATTAATTGATGTATTATTTTAAA
CAAAATTGCAACATTTTATGGCACTTAACTATTTAAATGCATACAATTAC
ATACTTAACTGTAAGTAGTGGATGTGAATTAAATAAAACCAACTAAAAGA
TTAAAAAAAAAAAAAAAAAA

AT31457.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2045 CG13322-RB 44..2045 1..2002 9890 99.6 Plus
CG13322.a 2050 CG13322.a 44..2050 1..2005 9860 99.5 Plus
CG13322-RC 2214 CG13322-RC 377..2209 173..2005 9060 99.6 Plus
CG13322-RC 2214 CG13322-RC 153..324 1..172 845 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8821559..8822439 2002..1122 4345 99.5 Minus
chr2R 21145070 chr2R 8823104..8823585 654..173 2380 99.6 Minus
chr2R 21145070 chr2R 8822491..8822825 1126..792 1645 99.4 Minus
chr2R 21145070 chr2R 8823638..8823809 172..1 845 99.4 Minus
chr2R 21145070 chr2R 8822888..8823028 792..652 705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:03:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12934231..12935114 2005..1122 4360 99.5 Minus
2R 25286936 2R 12935779..12936260 654..173 2380 99.6 Minus
2R 25286936 2R 12935166..12935500 1126..792 1645 99.4 Minus
2R 25286936 2R 12936313..12936484 172..1 845 99.4 Minus
2R 25286936 2R 12935563..12935703 792..652 705 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12935430..12936313 2005..1122 4360 99.5 Minus
2R 25260384 2R 12936978..12937459 654..173 2380 99.5 Minus
2R 25260384 2R 12936365..12936699 1126..792 1645 99.4 Minus
2R 25260384 2R 12937512..12937683 172..1 845 99.4 Minus
2R 25260384 2R 12936762..12936902 792..652 705 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:34:39 has no hits.

AT31457.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:35:37 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8821559..8822434 1127..2002 99 <- Minus
chr2R 8822491..8822824 793..1126 99 <- Minus
chr2R 8822888..8823025 655..792 100 <- Minus
chr2R 8823104..8823585 173..654 99 <- Minus
chr2R 8823636..8823809 1..172 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:32:26 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 1..1005 480..1484 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:49 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 1..1005 480..1484 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:32:56 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 1..1005 480..1484 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:52 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 1..1005 480..1484 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:59 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 1..1005 480..1484 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:55 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 44..2047 1..2002 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:49 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 44..2045 1..2002 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:56 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 52..2053 1..2002 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:52 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 44..2047 1..2002 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:59 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 52..2053 1..2002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:35:37 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12935563..12935700 655..792 100 <- Minus
2R 12934234..12935109 1127..2002 99 <- Minus
2R 12935166..12935499 793..1126 99 <- Minus
2R 12935779..12936260 173..654 99 <- Minus
2R 12936311..12936484 1..172 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:35:37 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12935563..12935700 655..792 100 <- Minus
2R 12934234..12935109 1127..2002 99 <- Minus
2R 12935166..12935499 793..1126 99 <- Minus
2R 12935779..12936260 173..654 99 <- Minus
2R 12936311..12936484 1..172 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:35:37 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12935563..12935700 655..792 100 <- Minus
2R 12934234..12935109 1127..2002 99 <- Minus
2R 12935166..12935499 793..1126 99 <- Minus
2R 12935779..12936260 173..654 99 <- Minus
2R 12936311..12936484 1..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:56 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8823068..8823205 655..792 100 <- Minus
arm_2R 8821739..8822614 1127..2002 99 <- Minus
arm_2R 8822671..8823004 793..1126 99 <- Minus
arm_2R 8823284..8823765 173..654 99 <- Minus
arm_2R 8823816..8823989 1..172 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:54 Download gff for AT31457.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12935433..12936308 1127..2002 99 <- Minus
2R 12936365..12936698 793..1126 99 <- Minus
2R 12936762..12936899 655..792 100 <- Minus
2R 12936978..12937459 173..654 99 <- Minus
2R 12937510..12937683 1..172 98   Minus

AT31457.pep Sequence

Translation from 479 to 1483

> AT31457.pep
MGNCLKCFQSAAEQSMPTNASSPNSHNSNSNACQTATSLANCYESVGINP
NANERCALETDELLSSRTPLKPAKANNCDTKRNSFKSLGLLNGSAPTMSD
IITTAVQESMEVSHQTLSKLFDVYKDPDDEEMILTDGIERLCNDLNYQPD
EFAILVLAWCLDASQMCRFTKVEFIEGLHKMRADTIDSIRVRLEQTIEML
KADAEMFKQLYRFTFRFGLEPDQRVLSLEMAIDLWKLVFTVQTPDLFSNW
IHFLEKHPNIRRIPKDTWNMYLNFTEQCDIQNYDDTEAWPSLFDDFVDYE
KSRALVSSGIHDDDNNNDDPLQSHVKAEDPGLVS*

AT31457.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11995-PA 332 GF11995-PA 1..332 1..334 1547 89.9 Plus
Dana\GF24079-PA 289 GF24079-PA 55..242 111..299 321 37 Plus
Dana\GF10048-PA 246 GF10048-PA 54..241 121..308 259 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22539-PA 334 GG22539-PA 1..334 1..334 1775 98.2 Plus
Dere\GG15909-PA 288 GG15909-PA 55..242 111..299 318 37 Plus
Dere\GG16098-PA 248 GG16098-PA 56..246 121..309 265 32 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21603-PA 338 GH21603-PA 1..330 1..327 1415 83 Plus
Dgri\GH14742-PA 282 GH14742-PA 55..242 111..299 310 36.5 Plus
Dgri\GH14379-PA 246 GH14379-PA 54..244 121..309 267 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
SCCRO3-PB 334 CG13322-PB 1..334 1..334 1771 100 Plus
SCCRO3-PC 334 CG13322-PC 1..334 1..334 1771 100 Plus
SCCRO3-PA 334 CG13322-PA 1..334 1..334 1771 100 Plus
SCCRO-PE 288 CG7427-PE 55..242 111..299 324 37.5 Plus
SCCRO-PA 288 CG7427-PA 55..242 111..299 324 37.5 Plus
SCCRO-PD 291 CG7427-PD 58..245 111..299 324 37.5 Plus
SCCRO-PB 291 CG7427-PB 58..245 111..299 324 37.5 Plus
SCCRO-PC 297 CG7427-PC 64..251 111..299 324 37.5 Plus
SCCRO4-PD 213 CG6597-PD 21..198 121..299 259 32.6 Plus
SCCRO4-PE 248 CG6597-PE 56..233 121..299 259 32.6 Plus
SCCRO4-PB 248 CG6597-PB 56..233 121..299 259 32.6 Plus
SCCRO4-PA 248 CG6597-PA 56..233 121..299 259 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19574-PA 336 GI19574-PA 1..328 1..327 1332 79.3 Plus
Dmoj\GI13120-PA 281 GI13120-PA 55..242 111..299 312 35.9 Plus
Dmoj\GI11322-PA 246 GI11322-PA 27..244 102..309 248 30.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17317-PA 336 GL17317-PA 1..336 1..334 1493 87.6 Plus
Dper\GL24888-PA 282 GL24888-PA 55..242 111..299 313 35.9 Plus
Dper\GL25128-PA 244 GL25128-PA 45..242 113..310 271 32.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12204-PA 336 GA12204-PA 1..336 1..334 1504 87.9 Plus
Dpse\GA20342-PA 282 GA20342-PA 55..242 111..299 313 35.9 Plus
Dpse\GA23691-PA 244 GA23691-PA 45..242 113..310 271 32.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20324-PA 334 GM20324-PA 1..334 1..334 1783 99.1 Plus
Dsec\GM25539-PA 239 GM25539-PA 6..193 111..299 316 37 Plus
Dsec\GM22269-PA 248 GM22269-PA 56..246 121..309 262 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25802-PA 334 GD25802-PA 1..334 1..334 1783 99.1 Plus
Dsim\GD14554-PA 288 GD14554-PA 55..242 111..299 318 37 Plus
Dsim\GD14870-PA 248 GD14870-PA 56..246 121..309 262 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21150-PA 340 GJ21150-PA 1..332 1..327 1430 83.4 Plus
Dvir\GJ13867-PA 281 GJ13867-PA 55..242 111..299 310 35.9 Plus
Dvir\GJ11578-PA 246 GJ11578-PA 54..244 121..309 256 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20876-PA 373 GK20876-PA 1..322 1..310 1385 81.2 Plus
Dwil\GK10601-PA 272 GK10601-PA 55..242 111..299 314 36.5 Plus
Dwil\GK16948-PA 246 GK16948-PA 54..233 121..301 261 31.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13410-PA 334 GE13410-PA 1..334 1..334 1768 97.9 Plus
Dyak\GE22250-PA 288 GE22250-PA 55..242 111..299 318 37 Plus
Dyak\GE23063-PA 248 GE23063-PA 56..246 121..309 265 32 Plus

AT31457.hyp Sequence

Translation from 479 to 1483

> AT31457.hyp
MGNCLKCFQSAAEQSMPTNASSPNSHNSNSNACQTATSLANCYESVGINP
NANERCALETDELLSSRTPLKPAKANNCDTKRNSFKSLGLLNGSAPTMSD
IITTAVQESMEVSHQTLSKLFDVYKDPDDEEMILTDGIERLCNDLNYQPD
EFAILVLAWCLDASQMCRFTKVEFIEGLHKMRADTIDSIRVRLEQTIEML
KADAEMFKQLYRFTFRFGLEPDQRVLSLEMAIDLWKLVFTVQTPDLFSNW
IHFLEKHPNIRRIPKDTWNMYLNFTEQCDIQNYDDTEAWPSLFDDFVDYE
KSRALVSSGIHDDDNNNDDPLQSHVKAEDPGLVS*

AT31457.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PB 334 CG13322-PB 1..334 1..334 1771 100 Plus
CG13322-PC 334 CG13322-PC 1..334 1..334 1771 100 Plus
CG13322-PA 334 CG13322-PA 1..334 1..334 1771 100 Plus
CG7427-PE 288 CG7427-PE 55..242 111..299 324 37.5 Plus
CG7427-PA 288 CG7427-PA 55..242 111..299 324 37.5 Plus