Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT31822.complete Sequence
966 bp (966 high quality bases) assembled on 2003-01-22
GenBank Submission: AY075308
> AT31822.complete
CTCATATCCAAAGGCAACACAGGCCCCACTGTTCTAAATTTCCCATTCGG
CTAACATTATTTTTCTGATTTTTTTTTTGGCGTAAAATTAACACGTTATT
AGAGGGACCCTGTGATTGCGCGGACATCTAATCCATAATCCTTTGAAGAT
GTGCGACAAGCCCGCCTGCCCCCTGCCTCCGCGATGCTGTCCTCCGCCAC
CGCCTCCCTGTCGCCCGCCGCCCACCTTGTGGCAGAAATTGAACTGCGTT
CCGTGCAACCGTTTTGTGTTCTTCATGATCGGGGCGGGCATCGGATTATT
CTGGGACCATATGAAGAAGGAGGCCCAGAAGGCGGCCGAGGAGGCCGCGA
AATCGCCCAAGGAGAAGGAGAAGGAGGCCAAGGAGCGCGAGAAGAAGCAG
AAGGAAAAAGAGAAGGCCGAAAAGGAGAAGGCGGAGAAGGAGAAGAAGGA
GAGGGAGAAGAAGGAGAAGGAAAAGAAGGAGAAGGAAAAGAAGGAGAAGG
AGGCCAAGGGCAAAGAGAAGGGCAAGGAGGGCAAGTAACGACTATAGACC
CCCAAACGGACATGTCAAGGAGCAGGATGTTTTCCCCCAAAATTCTCATC
GAATCCATATCGTTTCTAAACTTCAAAATTTTCAAGTGCATTATATGGCA
TACCTAACGATAACTATTGATCAAGTAACAAGATCGGATGGGATATTTAA
CTGGAGAGAGGAAATGCCTTTGCGAAATTTGGATAACCATATCAGGCTTA
AAATTATACATCACCCGAAAATTGAAATTTACATTTTGGGTTCGTGATGA
TTTTGAGATATGATGATGATCTATGTTCTTACCGCTAAGGCTTTCTAATA
CGTTGATATTCTATTAAAAATTGTACAATGAATACACACCAAATGTATTG
CCCTCTGCAAGGACCCAAAATTAGTAAATTTATCTAAAGTTATTCAACAA
AAAAAAAAAAAAAAAA
AT31822.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12907-RA | 1000 | CG12907-RA | 42..994 | 1..953 | 4705 | 99.5 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 6240790..6241462 | 1..673 | 3335 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 6241527..6241806 | 669..948 | 1355 | 98.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:04:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10353368..10354040 | 1..673 | 3305 | 99.4 | Plus |
2R | 25286936 | 2R | 10354105..10354389 | 669..953 | 1410 | 99.6 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 10354567..10355239 | 1..673 | 3305 | 99.4 | Plus |
2R | 25260384 | 2R | 10355304..10355588 | 669..953 | 1410 | 99.6 | Plus |
Blast to na_te.dros performed 2019-03-16 23:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Juan | 4236 | Juan JUAN 4236bp | 3792..3880 | 874..784 | 117 | 60.4 | Minus |
AT31822.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:38 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 6241528..6241806 | 670..948 | 98 | | Plus |
chr2R | 6240790..6241147 | 1..358 | 99 | == | Plus |
chr2R | 6241319..6241458 | 530..669 | 100 | -> | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:32:55 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..474 | 184..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:39 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..474 | 184..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:49 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..474 | 184..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:43 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..474 | 184..657 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:45 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..474 | 184..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:42 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..948 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:39 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..948 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:49 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..948 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:43 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..948 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:45 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12907-RA | 1..945 | 4..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:38 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10353368..10354036 | 1..669 | 99 | -> | Plus |
2R | 10354106..10354384 | 670..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:38 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10353368..10354036 | 1..669 | 99 | -> | Plus |
2R | 10354106..10354384 | 670..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:38 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10353368..10354036 | 1..669 | 99 | -> | Plus |
2R | 10354106..10354384 | 670..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:49 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6240873..6241541 | 1..669 | 99 | -> | Plus |
arm_2R | 6241611..6241889 | 670..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:44 Download gff for
AT31822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10354567..10355235 | 1..669 | 99 | -> | Plus |
2R | 10355305..10355583 | 670..948 | 99 | | Plus |
AT31822.hyp Sequence
Translation from 183 to 656
> AT31822.hyp
MLSSATASLSPAAHLVAEIELRSVQPFCVLHDRGGHRIILGPYEEGGPEG
GRGGREIAQGEGEGGQGAREEAEGKREGRKGEGGEGEEGEGEEGEGKEGE
GKEGEGGQGQREGQGGQVTTIDPQTDMSRSRMFSPKILIESISFLNFKIF
KCIIWHT*
AT31822.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12907-PB | 157 | CG12907-PB | 1..157 | 1..157 | 826 | 100 | Plus |
CG12907-PA | 157 | CG12907-PA | 1..157 | 1..157 | 826 | 100 | Plus |
AT31822.pep Sequence
Translation from 183 to 656
> AT31822.pep
MLSSATASLSPAAHLVAEIELRSVQPFCVLHDRGGHRIILGPYEEGGPEG
GRGGREIAQGEGEGGQGAREEAEGKREGRKGEGGEGEEGEGEEGEGKEGE
GKEGEGGQGQREGQGGQVTTIDPQTDMSRSRMFSPKILIESISFLNFKIF
KCIIWHT*
Sequence AT31822.pep has no blast hits.