Clone AT31822 Report

Search the DGRC for AT31822

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:318
Well:22
Vector:pOTB7
Associated Gene/TranscriptCG12907-RA
Protein status:AT31822.pep: gold
Preliminary Size:684
Sequenced Size:966

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12907 2002-01-01 Sim4 clustering to Release 2
CG12907 2003-01-01 Sim4 clustering to Release 3
CG12907 2003-01-22 Blastp of sequenced clone
CG12907 2008-04-29 Release 5.5 accounting
CG12907 2008-08-15 Release 5.9 accounting
CG12907 2008-12-18 5.12 accounting

Clone Sequence Records

AT31822.complete Sequence

966 bp (966 high quality bases) assembled on 2003-01-22

GenBank Submission: AY075308

> AT31822.complete
CTCATATCCAAAGGCAACACAGGCCCCACTGTTCTAAATTTCCCATTCGG
CTAACATTATTTTTCTGATTTTTTTTTTGGCGTAAAATTAACACGTTATT
AGAGGGACCCTGTGATTGCGCGGACATCTAATCCATAATCCTTTGAAGAT
GTGCGACAAGCCCGCCTGCCCCCTGCCTCCGCGATGCTGTCCTCCGCCAC
CGCCTCCCTGTCGCCCGCCGCCCACCTTGTGGCAGAAATTGAACTGCGTT
CCGTGCAACCGTTTTGTGTTCTTCATGATCGGGGCGGGCATCGGATTATT
CTGGGACCATATGAAGAAGGAGGCCCAGAAGGCGGCCGAGGAGGCCGCGA
AATCGCCCAAGGAGAAGGAGAAGGAGGCCAAGGAGCGCGAGAAGAAGCAG
AAGGAAAAAGAGAAGGCCGAAAAGGAGAAGGCGGAGAAGGAGAAGAAGGA
GAGGGAGAAGAAGGAGAAGGAAAAGAAGGAGAAGGAAAAGAAGGAGAAGG
AGGCCAAGGGCAAAGAGAAGGGCAAGGAGGGCAAGTAACGACTATAGACC
CCCAAACGGACATGTCAAGGAGCAGGATGTTTTCCCCCAAAATTCTCATC
GAATCCATATCGTTTCTAAACTTCAAAATTTTCAAGTGCATTATATGGCA
TACCTAACGATAACTATTGATCAAGTAACAAGATCGGATGGGATATTTAA
CTGGAGAGAGGAAATGCCTTTGCGAAATTTGGATAACCATATCAGGCTTA
AAATTATACATCACCCGAAAATTGAAATTTACATTTTGGGTTCGTGATGA
TTTTGAGATATGATGATGATCTATGTTCTTACCGCTAAGGCTTTCTAATA
CGTTGATATTCTATTAAAAATTGTACAATGAATACACACCAAATGTATTG
CCCTCTGCAAGGACCCAAAATTAGTAAATTTATCTAAAGTTATTCAACAA
AAAAAAAAAAAAAAAA

AT31822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-RA 1000 CG12907-RA 42..994 1..953 4705 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6240790..6241462 1..673 3335 99.7 Plus
chr2R 21145070 chr2R 6241527..6241806 669..948 1355 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:04:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10353368..10354040 1..673 3305 99.4 Plus
2R 25286936 2R 10354105..10354389 669..953 1410 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10354567..10355239 1..673 3305 99.4 Plus
2R 25260384 2R 10355304..10355588 669..953 1410 99.6 Plus
Blast to na_te.dros performed 2019-03-16 23:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 3792..3880 874..784 117 60.4 Minus

AT31822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:38 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6241528..6241806 670..948 98   Plus
chr2R 6240790..6241147 1..358 99 == Plus
chr2R 6241319..6241458 530..669 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:32:55 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..474 184..657 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:39 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..474 184..657 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:49 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..474 184..657 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:43 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..474 184..657 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:45 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..474 184..657 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:42 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..948 1..948 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:39 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..948 1..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:49 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..948 1..948 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:43 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..948 1..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:45 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 1..945 4..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:38 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10353368..10354036 1..669 99 -> Plus
2R 10354106..10354384 670..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:38 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10353368..10354036 1..669 99 -> Plus
2R 10354106..10354384 670..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:38 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10353368..10354036 1..669 99 -> Plus
2R 10354106..10354384 670..948 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:49 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6240873..6241541 1..669 99 -> Plus
arm_2R 6241611..6241889 670..948 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:44 Download gff for AT31822.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10354567..10355235 1..669 99 -> Plus
2R 10355305..10355583 670..948 99   Plus

AT31822.hyp Sequence

Translation from 183 to 656

> AT31822.hyp
MLSSATASLSPAAHLVAEIELRSVQPFCVLHDRGGHRIILGPYEEGGPEG
GRGGREIAQGEGEGGQGAREEAEGKREGRKGEGGEGEEGEGEEGEGKEGE
GKEGEGGQGQREGQGGQVTTIDPQTDMSRSRMFSPKILIESISFLNFKIF
KCIIWHT*

AT31822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-PB 157 CG12907-PB 1..157 1..157 826 100 Plus
CG12907-PA 157 CG12907-PA 1..157 1..157 826 100 Plus

AT31822.pep Sequence

Translation from 183 to 656

> AT31822.pep
MLSSATASLSPAAHLVAEIELRSVQPFCVLHDRGGHRIILGPYEEGGPEG
GRGGREIAQGEGEGGQGAREEAEGKREGRKGEGGEGEEGEGEEGEGKEGE
GKEGEGGQGQREGQGGQVTTIDPQTDMSRSRMFSPKILIESISFLNFKIF
KCIIWHT*
Sequence AT31822.pep has no blast hits.