Clone BO01004 Report

Search the DGRC for BO01004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:4
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

BO01004.3prime Sequence

284 bp (283 high quality bases) assembled on 2005-11-30

> BO01004.3prime
ATGGTCTAGAAAGCTTGCCTTTCCGAAGCAGCCACGCCCACAAGTGTCCA
TGTGAAGATTTCTGGAAATATTATTGAAAATATGGAGGCTGCTGTTGCAA
TGTGCGTTGCAACTGTTGCAACCGTTGCCATTGCTGCAACTGCTGCTGTT
GTGCTGCGCCTGCGCAACATCTGCATATGTGTGTTTGTCTGCTGTTGATG
GGGGCGTGGCAAGTGCATTGTATAGACCAGATAACCGAATAGATTGAAAA
CCAACACCTGAACGTAGCATGTCGACTGATAACT

BO01004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 11:30:36 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
drm-RA 2330 CG10016-RA 1302..1553 270..19 1260 100 Minus
drm-RB 2572 CG10016-RB 1202..1453 270..19 1260 100 Minus
drm-RC 1799 CG10016-RC 977..1022 64..19 230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3547053..3547304 270..19 1260 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:55:49 has no hits.

BO01004.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:05 Download gff for BO01004.3prime
Subject Subject Range Query Range Percent Splice Strand
drm-RB 1200..1453 19..273 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:46 Download gff for BO01004.3prime
Subject Subject Range Query Range Percent Splice Strand
drm-RB 1200..1453 19..273 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:46 Download gff for BO01004.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3547051..3547304 19..273 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:05 Download gff for BO01004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3547051..3547304 19..273 99   Minus

BO01004.5prime Sequence

284 bp (283 high quality bases) assembled on 2005-11-29

> BO01004.5prime
GAAGTTATCAGTCGACATGCTACGTTCAGGTGTTGGTTTTCAATCTATTC
GGTTATCTGGTCTATACAATGCACTTGCCACGCCCCCATCAACAGCAGAC
AAACACACATATGCAGATGTTGCGCAGGCGCAGCACAACAGCAGCAGTTG
CAGCAATGGCAACGGTTGCAACAGTTGCAACGCACATTGCAACAGCAGCC
TCCATATTTTCAATAATATTTCCAGAAATCTTCACATGGACACTTGTGGG
CGTGGCTGCTTCGGAAAGGCAAGCTTTCTAGACC

BO01004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 11:30:37 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
drm-RA 2330 CG10016-RA 1302..1553 17..268 1260 100 Plus
drm-RB 2572 CG10016-RB 1202..1453 17..268 1260 100 Plus
drm-RC 1799 CG10016-RC 977..1022 223..268 230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3547053..3547304 17..268 1260 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:08:26 has no hits.

BO01004.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:15 Download gff for BO01004.5prime
Subject Subject Range Query Range Percent Splice Strand
drm-RB 1200..1453 14..268 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:08 Download gff for BO01004.5prime
Subject Subject Range Query Range Percent Splice Strand
drm-RB 1200..1453 14..268 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:08 Download gff for BO01004.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3547051..3547304 14..268 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:15 Download gff for BO01004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3547051..3547304 14..268 99   Plus