Clone Sequence Records
BO01004.3prime Sequence
284 bp (283 high quality bases) assembled on 2005-11-30
> BO01004.3prime
ATGGTCTAGAAAGCTTGCCTTTCCGAAGCAGCCACGCCCACAAGTGTCCA
TGTGAAGATTTCTGGAAATATTATTGAAAATATGGAGGCTGCTGTTGCAA
TGTGCGTTGCAACTGTTGCAACCGTTGCCATTGCTGCAACTGCTGCTGTT
GTGCTGCGCCTGCGCAACATCTGCATATGTGTGTTTGTCTGCTGTTGATG
GGGGCGTGGCAAGTGCATTGTATAGACCAGATAACCGAATAGATTGAAAA
CCAACACCTGAACGTAGCATGTCGACTGATAACT
BO01004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 11:30:36 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drm-RA | 2330 | CG10016-RA | 1302..1553 | 270..19 | 1260 | 100 | Minus |
drm-RB | 2572 | CG10016-RB | 1202..1453 | 270..19 | 1260 | 100 | Minus |
drm-RC | 1799 | CG10016-RC | 977..1022 | 64..19 | 230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3547053..3547304 | 270..19 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:55:49 has no hits.
BO01004.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:05 Download gff for
BO01004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drm-RB | 1200..1453 | 19..273 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:46 Download gff for
BO01004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drm-RB | 1200..1453 | 19..273 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:46 Download gff for
BO01004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3547051..3547304 | 19..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:05 Download gff for
BO01004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3547051..3547304 | 19..273 | 99 | | Minus |
BO01004.5prime Sequence
284 bp (283 high quality bases) assembled on 2005-11-29
> BO01004.5prime
GAAGTTATCAGTCGACATGCTACGTTCAGGTGTTGGTTTTCAATCTATTC
GGTTATCTGGTCTATACAATGCACTTGCCACGCCCCCATCAACAGCAGAC
AAACACACATATGCAGATGTTGCGCAGGCGCAGCACAACAGCAGCAGTTG
CAGCAATGGCAACGGTTGCAACAGTTGCAACGCACATTGCAACAGCAGCC
TCCATATTTTCAATAATATTTCCAGAAATCTTCACATGGACACTTGTGGG
CGTGGCTGCTTCGGAAAGGCAAGCTTTCTAGACC
BO01004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 11:30:37 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drm-RA | 2330 | CG10016-RA | 1302..1553 | 17..268 | 1260 | 100 | Plus |
drm-RB | 2572 | CG10016-RB | 1202..1453 | 17..268 | 1260 | 100 | Plus |
drm-RC | 1799 | CG10016-RC | 977..1022 | 223..268 | 230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3547053..3547304 | 17..268 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:08:26 has no hits.
BO01004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:15 Download gff for
BO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drm-RB | 1200..1453 | 14..268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:08 Download gff for
BO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drm-RB | 1200..1453 | 14..268 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:08 Download gff for
BO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3547051..3547304 | 14..268 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:15 Download gff for
BO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3547051..3547304 | 14..268 | 99 | | Plus |