Clone Sequence Records
BO01006.3prime Sequence
371 bp (370 high quality bases) assembled on 2005-11-30
> BO01006.3prime
ATGGTCTAGAAAGCTTGCGTCATTGTCCTTGGGATCGGGATCTGGTTCAG
CGAGAATCTCCTGGATGATTCGATGGCCGTCCTCCGTTTTCTCACCCTGA
ATGATCAGATCTCTAAGCGTAGATATATGTTTTTCACTCGTCTCGATCTG
AACCTTAAGAGCATCGTTTTGCTTCCTCAAATCATCGATGCGTTTCTTAC
GTTCCTCGGCCGATTTCTTGGTCTTTTCGCGTGTGCGCTGAACAGCCTCA
TTGTTTTTCTTTCTTTTTTCTTTGTACGCTGGATCGTCTGTGTGCGGACT
TAATGGCGAATCGCTATTTTTGCTGGTCGACGCGGCAGTTCTCTTTTTGG
CCGGCATGTCGACTGATAACT
BO01006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-PA | 342 | CG6272-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-RB | 614 | CG6272-RB | 77..415 | 357..19 | 1695 | 100 | Minus |
| CG6272-RA | 543 | CG6272-RA | 77..415 | 357..19 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11097645..11097874 | 19..248 | 1150 | 100 | Plus |
| 3L | 28110227 | 3L | 11097999..11098110 | 246..357 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:40:52 has no hits.
BO01006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:20:54 Download gff for
BO01006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:30 Download gff for
BO01006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:45 Download gff for
BO01006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:55 Download gff for
BO01006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 15..357 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:55 Download gff for
BO01006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11097642..11097872 | 15..246 | 99 | <- | Plus |
| 3L | 11098000..11098110 | 247..357 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:45 Download gff for
BO01006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11090742..11090972 | 15..246 | 99 | <- | Plus |
| arm_3L | 11091100..11091210 | 247..357 | 100 | | Plus |
BO01006.5prime Sequence
371 bp (370 high quality bases) assembled on 2005-11-30
> BO01006.5prime
GAAGTTATCAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCA
GCAAAAATAGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTAC
AAAGAAAAAAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAA
GACCAAGAAATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGA
AGCAAAACGATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATA
TCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCA
TCGAATCATCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACA
ATGACGCAAGCTTTCTAGACC
BO01006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-PA | 342 | CG6272-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-RB | 614 | CG6272-RB | 77..415 | 17..355 | 1695 | 100 | Plus |
| CG6272-RA | 543 | CG6272-RA | 77..415 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11097645..11097874 | 355..126 | 1150 | 100 | Minus |
| 3L | 28110227 | 3L | 11097999..11098110 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:11:08 has no hits.
BO01006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:20:55 Download gff for
BO01006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:32 Download gff for
BO01006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:46 Download gff for
BO01006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:38:23 Download gff for
BO01006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 17..359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:38:23 Download gff for
BO01006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11098000..11098110 | 17..127 | 100 | | Minus |
| 3L | 11097642..11097872 | 128..359 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:46 Download gff for
BO01006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11090742..11090972 | 128..359 | 99 | <- | Minus |
| arm_3L | 11091100..11091210 | 17..127 | 100 | | Minus |
BO01006.complete Sequence
373 bp (373 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629385
> BO01006.complete
GAAGTTATCAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCA
GCAAAAATAGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTAC
AAAGAAAAAAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAA
GACCAAGAAATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGA
AGCAAAACGATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATA
TCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCA
TCGAATCATCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACA
ATGACGCAAGCTTTCTAGACCAT
BO01006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-RB | 342 | CG6272-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
| CG6272-RA | 342 | CG6272-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-RB | 614 | CG6272-RB | 77..415 | 17..355 | 1695 | 100 | Plus |
| CG6272-RA | 543 | CG6272-RA | 77..415 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11097645..11097874 | 355..126 | 1150 | 100 | Minus |
| 3L | 28110227 | 3L | 11097999..11098110 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:06:12 has no hits.
BO01006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:48 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:54 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:09 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..415 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:48 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:03 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..415 | 17..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:03 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11097643..11097872 | 128..357 | 99 | <- | Minus |
| 3L | 11098000..11098110 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:09 Download gff for
BO01006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11091100..11091210 | 17..127 | 100 | | Minus |
| arm_3L | 11090743..11090972 | 128..357 | 99 | <- | Minus |
BO01006.pep Sequence
Translation from 16 to 373
> BO01006.pep
MPAKKRTAASTSKNSDSPLSPHTDDPAYKEKRKKNNEAVQRTREKTKKSA
EERKKRIDDLRKQNDALKVQIETSEKHISTLRDLIIQGEKTEDGHRIIQE
ILAEPDPDPKDNDASFLDH
BO01006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-PB | 113 | CG6272-PB | 1..113 | 1..113 | 577 | 100 | Plus |
| CG6272-PA | 113 | CG6272-PA | 1..113 | 1..113 | 577 | 100 | Plus |
