Clone Sequence Records
BO01008.3prime Sequence
428 bp (427 high quality bases) assembled on 2005-11-30
> BO01008.3prime
ATGGTCTAGAAAGCTTGCGCCGAGTCTTCGTATCTCGTCCATGGTGAATC
CGTTGCGGTTGAGCATTATGCAGAAGAGCACGTACACATAGTAGCTTCCC
GGGATGAAGGTCAGTGCCCCGATGATACCCAACGCCCACACCCGATCCGA
TCGCTCCCGGCTCGTGTCCGTCACCCAGTTTAAGGTGGCAAAGGCGATGC
AAACAATGCCACCGATAAACAGCAAAAGAATGATAATAATGGTCTTCCAA
GGCACTGGACCTGGCATCGCCGGTTCCGTCCACTGTTCATTAACGAATCC
ATCGGTCTCGCATTGGGACTCCACCACCTTGATGTACTCTCCGGAGCCTG
CTGGCGCGGAACTCCTGCCCCCTCCATTTAGGCGGTGCCGCGACTCCGAA
TTGGTGGGCTCCATGTCGACTGATAACT
BO01008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-PA | 399 | CG2611-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 634 | CG2611-RA | 63..458 | 414..19 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20650251..20650462 | 414..203 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 20650537..20650722 | 204..19 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:07 has no hits.
BO01008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:20:58 Download gff for
BO01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:37 Download gff for
BO01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:52 Download gff for
BO01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..462 | 15..422 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:42 Download gff for
BO01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..462 | 15..422 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:42 Download gff for
BO01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20650246..20650460 | 205..422 | 98 | -> | Minus |
2L | 20650537..20650729 | 14..204 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:52 Download gff for
BO01008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20650246..20650460 | 205..422 | 98 | -> | Minus |
arm_2L | 20650537..20650729 | 14..204 | 98 | -> | Minus |
BO01008.5prime Sequence
428 bp (427 high quality bases) assembled on 2005-11-30
> BO01008.5prime
GAAGTTATCAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCC
TAAATGGAGGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATC
AAGGTGGTGGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTG
GACGGAACCGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCA
TTCTTTTGCTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTA
AACTGGGTGACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTT
GGGTATCATCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACG
TGCTCTTCTGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATA
CGAAGACTCGGCGCAAGCTTTCTAGACC
BO01008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-PA | 399 | CG2611-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 634 | CG2611-RA | 63..458 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20650251..20650462 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 20650537..20650722 | 227..412 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:08:25 has no hits.
BO01008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:20:59 Download gff for
BO01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:39 Download gff for
BO01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:42:32 Download gff for
BO01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..462 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:14:06 Download gff for
BO01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 58..462 | 9..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:14:06 Download gff for
BO01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20650246..20650460 | 9..226 | 98 | -> | Plus |
2L | 20650537..20650729 | 227..417 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:42:32 Download gff for
BO01008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20650246..20650460 | 9..226 | 98 | -> | Plus |
arm_2L | 20650537..20650729 | 227..417 | 98 | -> | Plus |
BO01008.complete Sequence
430 bp (430 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629386
> BO01008.complete
GAAGTTATCAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCC
TAAATGGAGGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATC
AAGGTGGTGGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTG
GACGGAACCGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCA
TTCTTTTGCTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTA
AACTGGGTGACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTT
GGGTATCATCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACG
TGCTCTTCTGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATA
CGAAGACTCGGCGCAAGCTTTCTAGACCAT
BO01008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 399 | CG2611-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-RA | 634 | CG2611-RA | 63..458 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20650251..20650462 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 20650537..20650722 | 227..412 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:52 has no hits.
BO01008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:49 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:56 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 53..457 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:12 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 63..458 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:49 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 53..457 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:38 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2611-RA | 63..458 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:38 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20650251..20650460 | 17..226 | 100 | -> | Plus |
2L | 20650537..20650722 | 227..414 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:12 Download gff for
BO01008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20650251..20650460 | 17..226 | 100 | -> | Plus |
arm_2L | 20650537..20650722 | 227..414 | 98 | | Plus |
BO01008.pep Sequence
Translation from 16 to 430
> BO01008.pep
MEPTNSESRHRLNGGGRSSAPAGSGEYIKVVESQCETDGFVNEQWTEPAM
PGPVPWKTIIIILLLFIGGIVCIAFATLNWVTDTSRERSDRVWALGIIGA
LTFIPGSYYVYVLFCIMLNRNGFTMDEIRRLGASFLDH
BO01008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2611-PA | 132 | CG2611-PA | 1..132 | 1..132 | 703 | 100 | Plus |