Clone Sequence Records
BO01010.3prime Sequence
428 bp (427 high quality bases) assembled on 2005-11-30
> BO01010.3prime
ATGGTCTAGAAAGCTTGCGCAGCCCTCCAGCTCGCTGGGAATGGGTATCT
CGTTCTGGATGGCGAACTGCAGCAGCGCCTTGTACTTGTTCTTCCAGTTG
GACACCTCGCGGCGCACCTGCTCGTTGTCCTCGTGCATCTGCTCCAGTTC
CGTCCACTCGTACGACTTCTTAGTCTCCAGCTCGTCCTTCTGTTCGATTC
TCTTGATGCGGCAACTGGCTGCGTATCCGCGATTCTTTAAGGTTCTCCGG
CGCTGCTTCATCCGAACGATCTCCTCGCGGTTCAGGCCACGCATCTTGAG
GGTCCGATTAAGATCCCTTACCGAAATGCTCACCAAATCGTCATCGGTAA
TATCCGGAATTGGACATGGCGAAAGTGGTGCCAGGGATGACTTTCTCTCG
CGCTTTGCTTCCATGTCGACTGATAACT
BO01010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9954-PA | 399 | maf-S-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 631 | CG9954-RA | 111..506 | 414..19 | 1980 | 100 | Minus |
| maf-S-RB | 646 | CG9954-RB | 158..521 | 382..19 | 1820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641180..20641543 | 382..19 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:41:03 has no hits.
BO01010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:00 Download gff for
BO01010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-PA | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:42 Download gff for
BO01010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9954-PA | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:46 Download gff for
BO01010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..510 | 15..424 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:23 Download gff for
BO01010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..510 | 15..424 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:23 Download gff for
BO01010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641181..20641547 | 15..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:46 Download gff for
BO01010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16528686..16529052 | 15..381 | 99 | | Minus |
BO01010.5prime Sequence
428 bp (427 high quality bases) assembled on 2005-11-30
> BO01010.5prime
GAAGTTATCAGTCGACATGGAAGCAAAGCGCGAGAGAAAGTCATCCCTGG
CACCACTTTCGCCATGTCCAATTCCGGATATTACCGATGACGATTTGGTG
AGCATTTCGGTAAGGGATCTTAATCGGACCCTCAAGATGCGTGGCCTGAA
CCGCGAGGAGATCGTTCGGATGAAGCAGCGCCGGAGAACCTTAAAGAATC
GCGGATACGCAGCCAGTTGCCGCATCAAGAGAATCGAACAGAAGGACGAG
CTGGAGACTAAGAAGTCGTACGAGTGGACGGAACTGGAGCAGATGCACGA
GGACAACGAGCAGGTGCGCCGCGAGGTGTCCAACTGGAAGAACAAGTACA
AGGCGCTGCTGCAGTTCGCCATCCAGAACGAGATACCCATTCCCAGCGAG
CTGGAGGGCTGCGCAAGCTTTCTAGACC
BO01010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9954-PA | 399 | maf-S-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 631 | CG9954-RA | 111..506 | 17..412 | 1980 | 100 | Plus |
| maf-S-RB | 646 | CG9954-RB | 158..521 | 49..412 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641180..20641543 | 49..412 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:08:51 has no hits.
BO01010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:01 Download gff for
BO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:44 Download gff for
BO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9954-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:42:35 Download gff for
BO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..510 | 7..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:22 Download gff for
BO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 101..510 | 7..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:22 Download gff for
BO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641181..20641547 | 50..416 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:42:35 Download gff for
BO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16528686..16529052 | 50..416 | 99 | | Plus |
BO01010.complete Sequence
430 bp (430 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629387
> BO01010.complete
GAAGTTATCAGTCGACATGGAAGCAAAGCGCGAGAGAAAGTCATCCCTGG
CACCACTTTCGCCATGTCCAATTCCGGATATTACCGATGACGATTTGGTG
AGCATTTCGGTAAGGGATCTTAATCGGACCCTCAAGATGCGTGGCCTGAA
CCGCGAGGAGATCGTTCGGATGAAGCAGCGCCGGAGAACCTTAAAGAATC
GCGGATACGCAGCCAGTTGCCGCATCAAGAGAATCGAACAGAAGGACGAG
CTGGAGACTAAGAAGTCGTACGAGTGGACGGAACTGGAGCAGATGCACGA
GGACAACGAGCAGGTGCGCCGCGAGGTGTCCAACTGGAAGAACAAGTACA
AGGCGCTGCTGCAGTTCGCCATCCAGAACGAGATACCCATTCCCAGCGAG
CTGGAGGGCTGCGCAAGCTTTCTAGACCAT
BO01010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 399 | CG9954-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
| maf-S-RB | 414 | CG9954-PB | 48..411 | 49..412 | 1820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-RA | 631 | CG9954-RA | 111..506 | 17..412 | 1980 | 100 | Plus |
| maf-S-RB | 646 | CG9954-RB | 158..521 | 49..412 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20641180..20641543 | 49..412 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:42:11 has no hits.
BO01010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:11 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:03 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 106..515 | 7..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:49 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 111..506 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:12 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 106..515 | 7..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:29 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| maf-S-RA | 111..506 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:29 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20641086..20641118 | 17..49 | 100 | -> | Plus |
| 2R | 20641181..20641543 | 50..414 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:49 Download gff for
BO01010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16528686..16529048 | 50..414 | 99 | | Plus |
| arm_2R | 16528591..16528623 | 17..49 | 100 | -> | Plus |
BO01010.pep Sequence
Translation from 16 to 430
> BO01010.pep
MEAKRERKSSLAPLSPCPIPDITDDDLVSISVRDLNRTLKMRGLNREEIV
RMKQRRRTLKNRGYAASCRIKRIEQKDELETKKSYEWTELEQMHEDNEQV
RREVSNWKNKYKALLQFAIQNEIPIPSELEGCASFLDH
BO01010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| maf-S-PA | 132 | CG9954-PA | 1..132 | 1..132 | 682 | 100 | Plus |
| maf-S-PB | 137 | CG9954-PB | 1..137 | 1..132 | 666 | 96.4 | Plus |
| tj-PB | 511 | CG10034-PB | 389..482 | 10..116 | 177 | 40.2 | Plus |
| tj-PC | 555 | CG10034-PC | 389..482 | 10..116 | 177 | 40.2 | Plus |
