Clone BO01016 Report

Search the DGRC for BO01016

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptbic-RA
Protein status:BO01016.pep: full length peptide match
Sequenced Size:541

Clone Sequence Records

BO01016.3prime Sequence

539 bp (538 high quality bases) assembled on 2005-11-30

> BO01016.3prime
ATGGTCTAGAAAGCTTGCAGCGGAGGCCGCCACCTCACCGGACTTCTCCT
CCTTTGTGTCGGCGATGGCCACCTCCTCGAAGTTCTCGACCAGATCGGGC
ACATCATCGTCACCGGCATCGGCGGCTGAAGAGCCGGCTGCTCCGCCGGC
GCCGCTCTTGCTGGCAATCTCCGTGGCCAGCTTCTTCAGCTGGTTGATGT
CCTGGGGACCCAGTTGCGTCAGAATGCCGGGCACCATCTCGGTGATCGTC
TTGTTCTCGCCATGACCCGTGATGGCAAACGTGTTCGTCGGCAGCGAGGC
CTGGGCCTTCGGATTGTTGAAGTGGATGACGGTGCCATCGTTCTTGATGA
TGTTCACCTCCTCGATGCCGGGAATTGTGTTTACCGACAGCTTCTTGAGC
GACGACTGCAGCTTCTTGTCGTCGGTGGCGGGCGTGGAGTGGACGATCTT
CTTCTTGCGGCGAGGGGTGCCCTTGCCGCCAATGCGCACCTGCGCCTGCA
ACTTCTTCAGCTTTTCCGCGTTCATGTCGACTGATAACT

BO01016.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3644-PA 510 bic-RA 1..507 525..19 2535 100 Minus
CG3644-PB 510 bic-RB 1..507 525..19 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
bic-RB 992 CG3644-RB 155..661 525..19 2535 100 Minus
bic-RA 1474 CG3644-RA 83..589 525..19 2535 100 Minus
CG11835-RD 3183 CG11835-RD 568..840 527..255 585 81.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12870403..12870909 525..19 2535 100 Minus
2L 23513712 2L 562911..563183 255..527 585 81 Plus
Blast to na_te.dros performed on 2015-02-11 04:14:49 has no hits.

BO01016.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:05 Download gff for BO01016.3prime
Subject Subject Range Query Range Percent Splice Strand
bic-PA 1..510 18..525 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:53 Download gff for BO01016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3644-PB 1..510 18..525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:10 Download gff for BO01016.3prime
Subject Subject Range Query Range Percent Splice Strand
bic-RA 73..595 12..536 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:37 Download gff for BO01016.3prime
Subject Subject Range Query Range Percent Splice Strand
bic-RA 73..595 12..536 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:37 Download gff for BO01016.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12870403..12870915 12..525 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:10 Download gff for BO01016.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8757908..8758420 12..525 99   Minus

BO01016.5prime Sequence

539 bp (538 high quality bases) assembled on 2005-11-29

> BO01016.5prime
GAAGTTATCAGTCGACATGAACGCGGAAAAGCTGAAGAAGTTGCAGGCGC
AGGTGCGCATTGGCGGCAAGGGCACCCCTCGCCGCAAGAAGAAGATCGTC
CACTCCACGCCCGCCACCGACGACAAGAAGCTGCAGTCGTCGCTCAAGAA
GCTGTCGGTAAACACAATTCCCGGCATCGAGGAGGTGAACATCATCAAGA
ACGATGGCACCGTCATCCACTTCAACAATCCGAAGGCCCAGGCCTCGCTG
CCGACGAACACGTTTGCCATCACGGGTCATGGCGAGAACAAGACGATCAC
CGAGATGGTGCCCGGCATTCTGACGCAACTGGGTCCCCAGGACATCAACC
AGCTGAAGAAGCTGGCCACGGAGATTGCCAGCAAGAGCGGCGCCGGCGGA
GCAGCCGGCTCTTCAGCCGCCGATGCCGGTGACGATGATGTGCCCGATCT
GGTCGAGAACTTCGAGGAGGTGGCCATCGCCGACACAAAGGAGGAGAAGT
CCGGTGAGGTGGCGGCCTCCGCTGCAAGCTTTCTAGACC

BO01016.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3644-PA 510 bic-RA 1..507 17..523 2535 100 Plus
CG3644-PB 510 bic-RB 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
bic-RB 992 CG3644-RB 155..661 17..523 2535 100 Plus
bic-RA 1474 CG3644-RA 83..589 17..523 2535 100 Plus
CG11835-RD 3183 CG11835-RD 568..840 15..287 585 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12870403..12870909 17..523 2535 100 Plus
2L 23513712 2L 562911..563183 287..15 585 81 Minus
Blast to na_te.dros performed on 2015-02-12 15:57:28 has no hits.

BO01016.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:06 Download gff for BO01016.5prime
Subject Subject Range Query Range Percent Splice Strand
bic-PA 1..510 17..524 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:55 Download gff for BO01016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3644-PB 1..510 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:31 Download gff for BO01016.5prime
Subject Subject Range Query Range Percent Splice Strand
bic-RA 73..595 6..530 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:58 Download gff for BO01016.5prime
Subject Subject Range Query Range Percent Splice Strand
bic-RA 73..595 6..530 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:58 Download gff for BO01016.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12870403..12870915 17..530 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:31 Download gff for BO01016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8757908..8758420 17..530 99   Plus

BO01016.complete Sequence

541 bp (541 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629389

> BO01016.complete
GAAGTTATCAGTCGACATGAACGCGGAAAAGCTGAAGAAGTTGCAGGCGC
AGGTGCGCATTGGCGGCAAGGGCACCCCTCGCCGCAAGAAGAAGATCGTC
CACTCCACGCCCGCCACCGACGACAAGAAGCTGCAGTCGTCGCTCAAGAA
GCTGTCGGTAAACACAATTCCCGGCATCGAGGAGGTGAACATCATCAAGA
ACGATGGCACCGTCATCCACTTCAACAATCCGAAGGCCCAGGCCTCGCTG
CCGACGAACACGTTTGCCATCACGGGTCATGGCGAGAACAAGACGATCAC
CGAGATGGTGCCCGGCATTCTGACGCAACTGGGTCCCCAGGACATCAACC
AGCTGAAGAAGCTGGCCACGGAGATTGCCAGCAAGAGCGGCGCCGGCGGA
GCAGCCGGCTCTTCAGCCGCCGATGCCGGTGACGATGATGTGCCCGATCT
GGTCGAGAACTTCGAGGAGGTGGCCATCGCCGACACAAAGGAGGAGAAGT
CCGGTGAGGTGGCGGCCTCCGCTGCAAGCTTTCTAGACCAT

BO01016.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
bic-RB 510 CG3644-PB 1..507 17..523 2535 100 Plus
bic-RA 510 CG3644-PA 1..507 17..523 2535 100 Plus
CG11835-RD 2388 CG11835-PD 1..271 17..287 575 80.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
bic-RB 992 CG3644-RB 155..661 17..523 2535 100 Plus
bic-RA 1474 CG3644-RA 83..589 17..523 2535 100 Plus
CG11835-RD 3183 CG11835-RD 568..840 15..287 585 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12870403..12870909 17..523 2535 100 Plus
2L 23513712 2L 562911..563183 287..15 585 81 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:58 has no hits.

BO01016.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:52 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
bic-RB 1..510 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:59 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
bic-RB 149..661 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:00 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
bic-RA 83..589 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:52 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
bic-RB 149..661 17..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:32 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
bic-RA 83..589 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:32 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12870403..12870909 17..525 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:00 Download gff for BO01016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8757908..8758414 17..525 99   Plus

BO01016.pep Sequence

Translation from 16 to 541

> BO01016.pep
MNAEKLKKLQAQVRIGGKGTPRRKKKIVHSTPATDDKKLQSSLKKLSVNT
IPGIEEVNIIKNDGTVIHFNNPKAQASLPTNTFAITGHGENKTITEMVPG
ILTQLGPQDINQLKKLATEIASKSGAGGAAGSSAADAGDDDVPDLVENFE
EVAIADTKEEKSGEVAASAASFLDH

BO01016.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
bic-PB 169 CG3644-PB 1..169 1..169 844 100 Plus
bic-PA 169 CG3644-PA 1..169 1..169 844 100 Plus
CG11835-PD 795 CG11835-PD 1..169 1..169 524 63.3 Plus
CG11835-PC 795 CG11835-PC 1..169 1..169 524 63.3 Plus
CG11835-PB 795 CG11835-PB 1..169 1..169 524 63.3 Plus