Clone Sequence Records
BO01016.3prime Sequence
539 bp (538 high quality bases) assembled on 2005-11-30
> BO01016.3prime
ATGGTCTAGAAAGCTTGCAGCGGAGGCCGCCACCTCACCGGACTTCTCCT
CCTTTGTGTCGGCGATGGCCACCTCCTCGAAGTTCTCGACCAGATCGGGC
ACATCATCGTCACCGGCATCGGCGGCTGAAGAGCCGGCTGCTCCGCCGGC
GCCGCTCTTGCTGGCAATCTCCGTGGCCAGCTTCTTCAGCTGGTTGATGT
CCTGGGGACCCAGTTGCGTCAGAATGCCGGGCACCATCTCGGTGATCGTC
TTGTTCTCGCCATGACCCGTGATGGCAAACGTGTTCGTCGGCAGCGAGGC
CTGGGCCTTCGGATTGTTGAAGTGGATGACGGTGCCATCGTTCTTGATGA
TGTTCACCTCCTCGATGCCGGGAATTGTGTTTACCGACAGCTTCTTGAGC
GACGACTGCAGCTTCTTGTCGTCGGTGGCGGGCGTGGAGTGGACGATCTT
CTTCTTGCGGCGAGGGGTGCCCTTGCCGCCAATGCGCACCTGCGCCTGCA
ACTTCTTCAGCTTTTCCGCGTTCATGTCGACTGATAACT
BO01016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3644-PA | 510 | bic-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
CG3644-PB | 510 | bic-RB | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bic-RB | 992 | CG3644-RB | 155..661 | 525..19 | 2535 | 100 | Minus |
bic-RA | 1474 | CG3644-RA | 83..589 | 525..19 | 2535 | 100 | Minus |
CG11835-RD | 3183 | CG11835-RD | 568..840 | 527..255 | 585 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12870403..12870909 | 525..19 | 2535 | 100 | Minus |
2L | 23513712 | 2L | 562911..563183 | 255..527 | 585 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:14:49 has no hits.
BO01016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:05 Download gff for
BO01016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-PA | 1..510 | 18..525 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:53 Download gff for
BO01016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3644-PB | 1..510 | 18..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:10 Download gff for
BO01016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RA | 73..595 | 12..536 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:37 Download gff for
BO01016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RA | 73..595 | 12..536 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:37 Download gff for
BO01016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12870403..12870915 | 12..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:10 Download gff for
BO01016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8757908..8758420 | 12..525 | 99 | | Minus |
BO01016.5prime Sequence
539 bp (538 high quality bases) assembled on 2005-11-29
> BO01016.5prime
GAAGTTATCAGTCGACATGAACGCGGAAAAGCTGAAGAAGTTGCAGGCGC
AGGTGCGCATTGGCGGCAAGGGCACCCCTCGCCGCAAGAAGAAGATCGTC
CACTCCACGCCCGCCACCGACGACAAGAAGCTGCAGTCGTCGCTCAAGAA
GCTGTCGGTAAACACAATTCCCGGCATCGAGGAGGTGAACATCATCAAGA
ACGATGGCACCGTCATCCACTTCAACAATCCGAAGGCCCAGGCCTCGCTG
CCGACGAACACGTTTGCCATCACGGGTCATGGCGAGAACAAGACGATCAC
CGAGATGGTGCCCGGCATTCTGACGCAACTGGGTCCCCAGGACATCAACC
AGCTGAAGAAGCTGGCCACGGAGATTGCCAGCAAGAGCGGCGCCGGCGGA
GCAGCCGGCTCTTCAGCCGCCGATGCCGGTGACGATGATGTGCCCGATCT
GGTCGAGAACTTCGAGGAGGTGGCCATCGCCGACACAAAGGAGGAGAAGT
CCGGTGAGGTGGCGGCCTCCGCTGCAAGCTTTCTAGACC
BO01016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3644-PA | 510 | bic-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
CG3644-PB | 510 | bic-RB | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bic-RB | 992 | CG3644-RB | 155..661 | 17..523 | 2535 | 100 | Plus |
bic-RA | 1474 | CG3644-RA | 83..589 | 17..523 | 2535 | 100 | Plus |
CG11835-RD | 3183 | CG11835-RD | 568..840 | 15..287 | 585 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12870403..12870909 | 17..523 | 2535 | 100 | Plus |
2L | 23513712 | 2L | 562911..563183 | 287..15 | 585 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:57:28 has no hits.
BO01016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:06 Download gff for
BO01016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-PA | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:55 Download gff for
BO01016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3644-PB | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:31 Download gff for
BO01016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RA | 73..595 | 6..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:58 Download gff for
BO01016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RA | 73..595 | 6..530 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:58 Download gff for
BO01016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12870403..12870915 | 17..530 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:31 Download gff for
BO01016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8757908..8758420 | 17..530 | 99 | | Plus |
BO01016.complete Sequence
541 bp (541 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629389
> BO01016.complete
GAAGTTATCAGTCGACATGAACGCGGAAAAGCTGAAGAAGTTGCAGGCGC
AGGTGCGCATTGGCGGCAAGGGCACCCCTCGCCGCAAGAAGAAGATCGTC
CACTCCACGCCCGCCACCGACGACAAGAAGCTGCAGTCGTCGCTCAAGAA
GCTGTCGGTAAACACAATTCCCGGCATCGAGGAGGTGAACATCATCAAGA
ACGATGGCACCGTCATCCACTTCAACAATCCGAAGGCCCAGGCCTCGCTG
CCGACGAACACGTTTGCCATCACGGGTCATGGCGAGAACAAGACGATCAC
CGAGATGGTGCCCGGCATTCTGACGCAACTGGGTCCCCAGGACATCAACC
AGCTGAAGAAGCTGGCCACGGAGATTGCCAGCAAGAGCGGCGCCGGCGGA
GCAGCCGGCTCTTCAGCCGCCGATGCCGGTGACGATGATGTGCCCGATCT
GGTCGAGAACTTCGAGGAGGTGGCCATCGCCGACACAAAGGAGGAGAAGT
CCGGTGAGGTGGCGGCCTCCGCTGCAAGCTTTCTAGACCAT
BO01016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bic-RB | 510 | CG3644-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
bic-RA | 510 | CG3644-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
CG11835-RD | 2388 | CG11835-PD | 1..271 | 17..287 | 575 | 80.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bic-RB | 992 | CG3644-RB | 155..661 | 17..523 | 2535 | 100 | Plus |
bic-RA | 1474 | CG3644-RA | 83..589 | 17..523 | 2535 | 100 | Plus |
CG11835-RD | 3183 | CG11835-RD | 568..840 | 15..287 | 585 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12870403..12870909 | 17..523 | 2535 | 100 | Plus |
2L | 23513712 | 2L | 562911..563183 | 287..15 | 585 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:58 has no hits.
BO01016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:52 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RB | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:59 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RB | 149..661 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:00 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RA | 83..589 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:52 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RB | 149..661 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:32 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bic-RA | 83..589 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:32 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12870403..12870909 | 17..525 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:00 Download gff for
BO01016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8757908..8758414 | 17..525 | 99 | | Plus |
BO01016.pep Sequence
Translation from 16 to 541
> BO01016.pep
MNAEKLKKLQAQVRIGGKGTPRRKKKIVHSTPATDDKKLQSSLKKLSVNT
IPGIEEVNIIKNDGTVIHFNNPKAQASLPTNTFAITGHGENKTITEMVPG
ILTQLGPQDINQLKKLATEIASKSGAGGAAGSSAADAGDDDVPDLVENFE
EVAIADTKEEKSGEVAASAASFLDH
BO01016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bic-PB | 169 | CG3644-PB | 1..169 | 1..169 | 844 | 100 | Plus |
bic-PA | 169 | CG3644-PA | 1..169 | 1..169 | 844 | 100 | Plus |
CG11835-PD | 795 | CG11835-PD | 1..169 | 1..169 | 524 | 63.3 | Plus |
CG11835-PC | 795 | CG11835-PC | 1..169 | 1..169 | 524 | 63.3 | Plus |
CG11835-PB | 795 | CG11835-PB | 1..169 | 1..169 | 524 | 63.3 | Plus |