Clone Sequence Records
BO01018.3prime Sequence
599 bp (598 high quality bases) assembled on 2005-11-30
> BO01018.3prime
ATGGTCTAGAAAGCTTGCGGACATGGGACCATTGGCTGTGACTACCGATG
CTGCTGCTGCCGCTGCTGATGTCACCTGCTGCACCTGCTGCTCCACCGAT
ACCGCTGCTGACTCGACTGCACTGCTGCCGTTCTCGGCGCTGCCGTTGGG
AATGCTCGTGGGTACCACCGCGGACGCTGGACTGGTGGCCACACCCGTTA
CCGCTACCGCTCCAGCGGCCTGCTGCTGAACTGCCTGACCCGCGGCAGCT
GGAGCAACGACACTTTGTACCGCCGGTGCCGCTTGAATGGCGGGCGTGGC
CGGCGGTGCGGCGAGTTGTAGCTGCAACTGCAGCTGCTGCAGTGTCTCCT
GCGGGATGTTCGACTTGAGAATGCTGTTCTCGAGCTCCAGCTTGTTGATC
TTGTCCATCAGCTCGGAGATGCGCTCTTTTAGCACTTCCACCTCCTCGCG
CACCGCTATCATGAGATGCGACTTGACCAGATCTTTTGCATTAGGCACCA
TCACATAGCAGGGGCTGTCGTAGCCCTTCTGCCAAATCTCGTATAGCCAA
TTCTCTGGCTGGCGCAGCGACATAGTGCCCATCATGTCGACTGATAACT
BO01018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5461-PC | 570 | bun-RC | 1..567 | 585..19 | 2835 | 100 | Minus |
CG5461-PD | 681 | bun-RD | 214..678 | 483..19 | 2325 | 100 | Minus |
CG5461-PE | 765 | bun-RE | 298..762 | 483..19 | 2325 | 100 | Minus |
CG5461-PF | 3294 | bun-RF | 2827..3291 | 483..19 | 2325 | 100 | Minus |
CG5461-PA | 3621 | bun-RA | 3154..3618 | 483..19 | 2325 | 100 | Minus |
CG5461-PB | 660 | bun-RB | 193..657 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 5139 | CG42281-RP | 3391..3957 | 585..19 | 2835 | 100 | Minus |
bun-RC | 1754 | CG5461-RC | 567..1133 | 585..19 | 2835 | 100 | Minus |
bun-RO | 3490 | CG42281-RO | 807..1271 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12457759..12458223 | 19..483 | 2325 | 100 | Plus |
2L | 23513712 | 2L | 12460588..12460690 | 483..585 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:14 has no hits.
BO01018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:09 Download gff for
BO01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-PC | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:00 Download gff for
BO01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5461-PC | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:55 Download gff for
BO01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1136 | 15..592 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:55 Download gff for
BO01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1136 | 15..592 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:55 Download gff for
BO01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12457755..12458223 | 15..483 | 99 | <- | Plus |
2L | 12460589..12460698 | 484..592 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:55 Download gff for
BO01018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12457755..12458223 | 15..483 | 99 | <- | Plus |
arm_2L | 12460589..12460698 | 484..592 | 96 | | Plus |
BO01018.5prime Sequence
599 bp (598 high quality bases) assembled on 2005-11-30
> BO01018.5prime
GAAGTTATCAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGA
ATTGGCTATACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTG
ATGGTGCCTAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGT
GCGCGAGGAGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACA
AGATCAACAAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCG
CAGGAGACACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCC
GGCCACGCCCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTC
CAGCTGCCGCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCG
GTAACGGGTGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCAT
TCCCAACGGCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGG
TATCGGTGGAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCA
GCATCGGTAGTCACAGCCAATGGTCCCATGTCCGCAAGCTTTCTAGACC
BO01018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5461-PC | 570 | bun-RC | 1..567 | 17..583 | 2835 | 100 | Plus |
CG5461-PD | 681 | bun-RD | 214..678 | 119..583 | 2325 | 100 | Plus |
CG5461-PE | 765 | bun-RE | 298..762 | 119..583 | 2325 | 100 | Plus |
CG5461-PF | 3294 | bun-RF | 2827..3291 | 119..583 | 2325 | 100 | Plus |
CG5461-PA | 3621 | bun-RA | 3154..3618 | 119..583 | 2325 | 100 | Plus |
CG5461-PB | 660 | bun-RB | 193..657 | 119..583 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 5139 | CG42281-RP | 3391..3957 | 17..583 | 2835 | 100 | Plus |
bun-RC | 1754 | CG5461-RC | 567..1133 | 17..583 | 2835 | 100 | Plus |
bun-RO | 3490 | CG42281-RO | 807..1271 | 119..583 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12457759..12458223 | 583..119 | 2325 | 100 | Minus |
2L | 23513712 | 2L | 12460588..12460690 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 18:42:25 has no hits.
BO01018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:10 Download gff for
BO01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-PC | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:02 Download gff for
BO01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5461-PC | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:10:52 Download gff for
BO01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1136 | 10..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:25:57 Download gff for
BO01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 559..1136 | 10..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:25:57 Download gff for
BO01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12457755..12458223 | 119..587 | 99 | <- | Minus |
2L | 12460589..12460698 | 10..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:10:52 Download gff for
BO01018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12457755..12458223 | 119..587 | 99 | <- | Minus |
arm_2L | 12460589..12460698 | 10..118 | 96 | | Minus |
BO01018.complete Sequence
601 bp (601 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629390
> BO01018.complete
GAAGTTATCAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGA
ATTGGCTATACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTG
ATGGTGCCTAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGT
GCGCGAGGAGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACA
AGATCAACAAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCG
CAGGAGACACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCC
GGCCACGCCCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTC
CAGCTGCCGCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCG
GTAACGGGTGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCAT
TCCCAACGGCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGG
TATCGGTGGAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCA
GCATCGGTAGTCACAGCCAATGGTCCCATGTCCGCAAGCTTTCTAGACCA
T
BO01018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 3414 | CG42281-PP | 2845..3411 | 17..583 | 2835 | 100 | Plus |
bun-RC | 570 | CG42281-PC | 1..567 | 17..583 | 2835 | 100 | Plus |
bun-RO | 579 | CG42281-PO | 112..576 | 119..583 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-RP | 5139 | CG42281-RP | 3391..3957 | 17..583 | 2835 | 100 | Plus |
bun-RC | 1754 | CG5461-RC | 567..1133 | 17..583 | 2835 | 100 | Plus |
bun-RO | 3490 | CG42281-RO | 807..1271 | 119..583 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12457759..12458223 | 583..119 | 2325 | 100 | Minus |
2L | 23513712 | 2L | 12460588..12460690 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:31 has no hits.
BO01018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:53 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RI | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:01 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RI | 540..1117 | 10..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:31:38 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 567..1133 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:54 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RI | 540..1117 | 10..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:56 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bun-RC | 567..1133 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:56 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12457757..12458223 | 119..585 | 99 | <- | Minus |
2L | 12460589..12460690 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:31:38 Download gff for
BO01018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12457757..12458223 | 119..585 | 99 | <- | Minus |
arm_2L | 12460589..12460690 | 17..118 | 100 | | Minus |
BO01018.pep Sequence
Translation from 16 to 601
> BO01018.pep
MMGTMSLRQPENWLYEIWQKGYDSPCYVMVPNAKDLVKSHLMIAVREEVE
VLKERISELMDKINKLELENSILKSNIPQETLQQLQLQLQLAAPPATPAI
QAAPAVQSVVAPAAAGQAVQQQAAGAVAVTGVATSPASAVVPTSIPNGSA
ENGSSAVESAAVSVEQQVQQVTSAAAAAASVVTANGPMSASFLDH
BO01018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bun-PC | 189 | CG5461-PC | 1..189 | 1..189 | 921 | 100 | Plus |
bun-PP | 1137 | CG42281-PP | 949..1137 | 1..189 | 921 | 100 | Plus |
bun-PO | 192 | CG42281-PO | 33..192 | 30..189 | 731 | 97.5 | Plus |
bun-PB | 219 | CG5461-PB | 60..219 | 30..189 | 731 | 97.5 | Plus |
bun-PH | 226 | CG42281-PN | 67..226 | 30..189 | 731 | 97.5 | Plus |