Clone Sequence Records
BO01020.3prime Sequence
611 bp (610 high quality bases) assembled on 2005-11-30
> BO01020.3prime
ATGGTCTAGAAAGCTTGCACTTATCAGGGACATCCCACCTGAATCCGTCT
CCGAACTCGATGGACGGGGGCTGATGTTGGTGTGGGACATCTGTGGACTG
GCCTGCAGCAGGTTGTCGCCGTAAGATCCCGGCACCGGAACAGAAACGGG
CAGCGTGTAGCTGCTGTTTGGAAGCTGGCGAGGGGCACCCGCACCGCCGA
TGGCCATCTGGTTGCGCTGCATCATGTTCTGGAACTCCTCGTCGATCTTG
TTGTACTTGGCCTCCGTTCGCGGAGTGAGTGTGTAGTCCGTTTCGGCTTC
GGGCGAGTCCGGCGACATCACGCCGTTCTTGTTCTCCTTCTCGATGATGT
TCTTGTTGGTGAGGGACTCGTGGGGCTCGTTGTACTCGGTGTACTTGAGC
AGGACGCGATCCATGTCGGTGCTGGCGTACTGGTACAGCTTGTTGCTCGA
CGAGAAGATGATCAGGGCGATCTCGCAGTCGCAGAGCACGGACAGCTCGT
AGGCCTTCTTCATCACGCCGAACTTGCGCTTGTTGAAGGTCACCTGCCGA
TTGCGTTCATCGGTGATGCGTGATATTTGAATTTTTTTGCGGCCCATGTC
GACTGATAACT
BO01020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1429-PE | 582 | Mef2-RE | 1..579 | 597..19 | 2895 | 100 | Minus |
CG1429-PD | 1623 | Mef2-RD | 1..577 | 597..21 | 2885 | 100 | Minus |
CG1429-PC | 1548 | Mef2-RC | 1..577 | 597..21 | 2885 | 100 | Minus |
CG1429-PB | 1530 | Mef2-RB | 1..559 | 597..39 | 2795 | 100 | Minus |
CG1429-PF | 1506 | Mef2-RF | 1..559 | 597..39 | 2795 | 100 | Minus |
CG1429-PA | 1551 | Mef2-RA | 1..559 | 597..39 | 2795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 598..21 | 2890 | 100 | Minus |
Mef2-RC | 5854 | CG1429-RC | 1056..1633 | 598..21 | 2890 | 100 | Minus |
Mef2-RD | 3690 | CG1429-RD | 1439..2016 | 598..21 | 2890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9919427..9919749 | 19..341 | 1615 | 100 | Plus |
2R | 25286936 | 2R | 9920519..9920725 | 340..546 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9921606..9921664 | 540..598 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:58:08 has no hits.
BO01020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:13 Download gff for
BO01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-PE | 1..582 | 18..597 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:08 Download gff for
BO01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1429-PE | 1..582 | 18..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:35 Download gff for
BO01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2016 | 21..607 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:15 Download gff for
BO01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2016 | 21..607 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:15 Download gff for
BO01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9920519..9920722 | 340..543 | 100 | <- | Plus |
2R | 9921610..9921673 | 544..607 | 95 | | Plus |
2R | 9919427..9919747 | 19..339 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:35 Download gff for
BO01020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5806932..5807252 | 19..339 | 100 | <- | Plus |
arm_2R | 5808024..5808227 | 340..543 | 100 | <- | Plus |
arm_2R | 5809115..5809178 | 544..607 | 95 | | Plus |
BO01020.5prime Sequence
611 bp (610 high quality bases) assembled on 2005-11-30
> BO01020.5prime
GAAGTTATCAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCA
CCGATGAACGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTG
ATGAAGAAGGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCT
GATCATCTTCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACA
TGGATCGCGTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCC
CTCACCAACAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTC
GCCGGACTCGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGG
AGGCCAAGTACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGC
AACCAGATGGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAG
CAGCTACACGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACA
ACCTGCTGCAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGT
CCATCGAGTTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTGCAAG
CTTTCTAGACC
BO01020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1429-PE | 582 | Mef2-RE | 1..579 | 17..595 | 2895 | 100 | Plus |
CG1429-PD | 1623 | Mef2-RD | 1..577 | 17..593 | 2885 | 100 | Plus |
CG1429-PC | 1548 | Mef2-RC | 1..577 | 17..593 | 2885 | 100 | Plus |
CG1429-PB | 1530 | Mef2-RB | 1..559 | 17..575 | 2795 | 100 | Plus |
CG1429-PF | 1506 | Mef2-RF | 1..559 | 17..575 | 2795 | 100 | Plus |
CG1429-PA | 1551 | Mef2-RA | 1..559 | 17..575 | 2795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 16..593 | 2890 | 100 | Plus |
Mef2-RC | 5854 | CG1429-RC | 1056..1633 | 16..593 | 2890 | 100 | Plus |
Mef2-RD | 3690 | CG1429-RD | 1439..2016 | 16..593 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9919427..9919749 | 595..273 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 9920519..9920725 | 274..68 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 9921606..9921664 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:41:49 has no hits.
BO01020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:14 Download gff for
BO01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-PE | 1..582 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:09 Download gff for
BO01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1429-PE | 1..582 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:46 Download gff for
BO01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2016 | 7..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:30 Download gff for
BO01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1430..2016 | 7..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:30 Download gff for
BO01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9919427..9919747 | 275..595 | 100 | <- | Minus |
2R | 9920519..9920722 | 71..274 | 100 | <- | Minus |
2R | 9921610..9921673 | 7..70 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:46 Download gff for
BO01020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5806932..5807252 | 275..595 | 100 | <- | Minus |
arm_2R | 5808024..5808227 | 71..274 | 100 | <- | Minus |
arm_2R | 5809115..5809178 | 7..70 | 95 | | Minus |
BO01020.complete Sequence
613 bp (613 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629391
> BO01020.complete
GAAGTTATCAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCA
CCGATGAACGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTG
ATGAAGAAGGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCT
GATCATCTTCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACA
TGGATCGCGTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCC
CTCACCAACAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTC
GCCGGACTCGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGG
AGGCCAAGTACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGC
AACCAGATGGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAG
CAGCTACACGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACA
ACCTGCTGCAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGT
CCATCGAGTTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTGCAAG
CTTTCTAGACCAT
BO01020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RG | 1536 | CG1429-PG | 1..577 | 17..593 | 2885 | 100 | Plus |
Mef2-RC | 1548 | CG1429-PC | 1..577 | 17..593 | 2885 | 100 | Plus |
Mef2-RD | 1623 | CG1429-PD | 1..577 | 17..593 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 16..593 | 2890 | 100 | Plus |
Mef2-RC | 5854 | CG1429-RC | 1056..1633 | 16..593 | 2890 | 100 | Plus |
Mef2-RD | 3690 | CG1429-RD | 1439..2016 | 16..593 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9919427..9919749 | 595..273 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 9920519..9920725 | 274..68 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 9921606..9921664 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:39:28 has no hits.
BO01020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:41 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RE | 1..582 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:16 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RE | 1016..1604 | 7..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:19 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1440..2017 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:41 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RE | 1016..1604 | 7..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:37 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mef2-RD | 1440..2017 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:37 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9919425..9919747 | 275..597 | 99 | <- | Minus |
2R | 9920519..9920722 | 71..274 | 100 | <- | Minus |
2R | 9921610..9921663 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:19 Download gff for
BO01020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5806930..5807252 | 275..597 | 99 | <- | Minus |
arm_2R | 5808024..5808227 | 71..274 | 100 | <- | Minus |
arm_2R | 5809115..5809168 | 17..70 | 100 | | Minus |
BO01020.pep Sequence
Translation from 16 to 613
> BO01020.pep
MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSS
SNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNIIEKENKNGVMSPDSPE
AETDYTLTPRTEAKYNKIDEEFQNMMQRNQMAIGGAGAPRQLPNSSYTLP
VSVPVPGSYGDNLLQASPQMSHTNISPRPSSSETDSGGMSLISASFLDH
BO01020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mef2-PG | 511 | CG1429-PG | 1..193 | 1..193 | 991 | 99.5 | Plus |
Mef2-PC | 515 | CG1429-PC | 1..192 | 1..192 | 990 | 100 | Plus |
Mef2-PD | 540 | CG1429-PD | 1..192 | 1..192 | 990 | 100 | Plus |
Mef2-PF | 501 | CG1429-PF | 1..186 | 1..186 | 961 | 100 | Plus |
Mef2-PB | 509 | CG1429-PB | 1..186 | 1..186 | 961 | 100 | Plus |