Clone Sequence Records
BO01022.3prime Sequence
617 bp (616 high quality bases) assembled on 2005-11-30
> BO01022.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCACATGGGGCCAGAGGTGGAGC
TGGCCTCGCTGGGCGCCGGGCTGCAGGCTCCGCTCTCCAAGCTGTCGCAT
TCCGAGGGAGGTGGAGTGACCATAGCTTGATCCTCTACTGGAGCTTGAAG
AGGCACTCCAATGGGCAGCGAGGGAACCACCACTTGCAGGTAGTTGAGAC
GATGGCCAAGGTGACTCATCAGCTGGGTGCCGAGATCCACACTCACTCCG
GGTACAGCGGCCAAGGTTTTGGACACTTCATTGGCAGCATGAACGTAGCC
AGCACGGAAACTCTCAGCGATGCTAAGCTTGGGATCGGCACTCGGAGACA
CTCCACCGGTGACGCTGGACAGACGCAGCTGCTTCTGGGCACGCAGCTTC
TTCATGTGCTCCACGGTCAGCTCCAGGATGTCGGCCTTCTCCAGCCGGGT
GATGTGCTCGCCCTCCTGGGTCAGGCACTCCACCATGATGTCCTTGAGCT
CGTCCAGGCACTTGTTAATCCTGGCACGGCGCTTACGCTCCAGCATGGGC
TTCATCACCTTGCGGTACTGATAGGTCTTGGACATCTCCATTTCCAGAAC
CATGTCGACTGATAACT
BO01022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14548-PA | 588 | HLHmbeta-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
CG8361-PA | 561 | HLHm7-RA | 16..113 | 588..491 | 340 | 93.8 | Minus |
CG8333-PA | 618 | HLHmgamma-RA | 22..119 | 588..491 | 340 | 93.8 | Minus |
CG8346-PA | 675 | HLHm3-RA | 7..107 | 591..491 | 255 | 90 | Minus |
CG8346-PA | 675 | HLHm3-RA | 130..196 | 468..402 | 210 | 92.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 131..715 | 603..19 | 2925 | 100 | Minus |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 204..397 | 591..398 | 640 | 88.7 | Minus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..289 | 588..413 | 460 | 84.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26005309..26005893 | 19..603 | 2925 | 100 | Plus |
3R | 32079331 | 3R | 26022026..26022219 | 591..398 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000139 | 588..413 | 460 | 84.1 | Minus |
3R | 32079331 | 3R | 26037178..26037291 | 588..475 | 405 | 90.4 | Minus |
3R | 32079331 | 3R | 26040357..26040416 | 561..502 | 180 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:22 has no hits.
BO01022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:15 Download gff for
BO01022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14548-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:12 Download gff for
BO01022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14548-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:36 Download gff for
BO01022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mbeta-HLH-RA | 124..724 | 12..611 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:38 Download gff for
BO01022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mbeta-HLH-RA | 124..724 | 12..611 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:38 Download gff for
BO01022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26005300..26005900 | 12..611 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:36 Download gff for
BO01022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21831022..21831622 | 12..611 | 98 | | Plus |
BO01022.5prime Sequence
617 bp (616 high quality bases) assembled on 2005-11-30
> BO01022.5prime
GAAGTTATCAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATC
AGTACCGCAAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGG
ATTAACAAGTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGAC
CCAGGAGGGCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGC
TGACCGTGGAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTG
TCCAGCGTCACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCAT
CGCTGAGAGTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCA
AAACCTTGGCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTG
ATGAGTCACCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTC
GCTGCCCATTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGG
TCACTCCACCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGC
CCGGCGCCCAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTG
GGCAAGCTTTCTAGACC
BO01022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14548-PA | 588 | HLHmbeta-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG8361-PA | 561 | HLHm7-RA | 16..113 | 32..129 | 340 | 93.8 | Plus |
CG8333-PA | 618 | HLHmgamma-RA | 22..119 | 32..129 | 340 | 93.8 | Plus |
CG8346-PA | 675 | HLHm3-RA | 7..107 | 29..129 | 255 | 90 | Plus |
CG8346-PA | 675 | HLHm3-RA | 130..196 | 152..218 | 210 | 92.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 131..715 | 17..601 | 2925 | 100 | Plus |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 204..397 | 29..222 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..289 | 32..207 | 460 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26005309..26005893 | 601..17 | 2925 | 100 | Minus |
3R | 32079331 | 3R | 26022026..26022219 | 29..222 | 640 | 88.7 | Plus |
3R | 32079331 | 3R | 25999964..26000139 | 32..207 | 460 | 84.1 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 32..145 | 405 | 90.4 | Plus |
3R | 32079331 | 3R | 26040357..26040416 | 59..118 | 180 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:21 has no hits.
BO01022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:15 Download gff for
BO01022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14548-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:14 Download gff for
BO01022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14548-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:56 Download gff for
BO01022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mbeta-HLH-RA | 124..724 | 9..608 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:09 Download gff for
BO01022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mbeta-HLH-RA | 124..724 | 9..608 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:09 Download gff for
BO01022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26005300..26005900 | 9..608 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:56 Download gff for
BO01022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21831022..21831622 | 9..608 | 98 | | Minus |
BO01022.complete Sequence
619 bp (619 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629392
> BO01022.complete
GAAGTTATCAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATC
AGTACCGCAAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGG
ATTAACAAGTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGAC
CCAGGAGGGCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGC
TGACCGTGGAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTG
TCCAGCGTCACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCAT
CGCTGAGAGTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCA
AAACCTTGGCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTG
ATGAGTCACCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTC
GCTGCCCATTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGG
TCACTCCACCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGC
CCGGCGCCCAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTG
GGCAAGCTTTCTAGACCAT
BO01022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
E(spl)m3-HLH-RA | 675 | CG8346-PA | 7..200 | 29..222 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 22..197 | 32..207 | 460 | 84.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 131..715 | 17..601 | 2925 | 100 | Plus |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 204..397 | 29..222 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..289 | 32..207 | 460 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26005309..26005893 | 601..17 | 2925 | 100 | Minus |
3R | 32079331 | 3R | 26022026..26022219 | 29..222 | 640 | 88.7 | Plus |
3R | 32079331 | 3R | 25999964..26000139 | 32..207 | 460 | 84.1 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 32..145 | 405 | 90.4 | Plus |
3R | 32079331 | 3R | 26040357..26040416 | 59..118 | 180 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:55:40 has no hits.
BO01022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:42 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmbeta-RA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:46 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmbeta-RA | 124..724 | 9..608 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:59 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mbeta-HLH-RA | 131..715 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:42 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmbeta-RA | 124..724 | 9..608 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:14 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mbeta-HLH-RA | 131..715 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:14 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26005306..26005893 | 17..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:59 Download gff for
BO01022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21831028..21831615 | 17..603 | 99 | | Minus |
BO01022.pep Sequence
Translation from 16 to 619
> BO01022.pep
MVLEMEMSKTYQYRKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEH
ITRLEKADILELTVEHMKKLRAQKQLRLSSVTGGVSPSADPKLSIAESFR
AGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLNYLQVVVPSLPIGV
PLQAPVEDQAMVTPPPSECDSLESGACSPAPSEASSTSGPMWRPWASFLD
H
BO01022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 1..195 | 1..195 | 999 | 100 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 6..195 | 475 | 50.5 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 3..224 | 5..195 | 422 | 45.5 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 1..186 | 1..195 | 412 | 46.3 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..173 | 7..195 | 308 | 40 | Plus |