Clone BO01022 Report

Search the DGRC for BO01022

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptHLHmbeta-RA
Protein status:BO01022.pep:
Sequenced Size:619

Clone Sequence Records

BO01022.3prime Sequence

617 bp (616 high quality bases) assembled on 2005-11-30

> BO01022.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCACATGGGGCCAGAGGTGGAGC
TGGCCTCGCTGGGCGCCGGGCTGCAGGCTCCGCTCTCCAAGCTGTCGCAT
TCCGAGGGAGGTGGAGTGACCATAGCTTGATCCTCTACTGGAGCTTGAAG
AGGCACTCCAATGGGCAGCGAGGGAACCACCACTTGCAGGTAGTTGAGAC
GATGGCCAAGGTGACTCATCAGCTGGGTGCCGAGATCCACACTCACTCCG
GGTACAGCGGCCAAGGTTTTGGACACTTCATTGGCAGCATGAACGTAGCC
AGCACGGAAACTCTCAGCGATGCTAAGCTTGGGATCGGCACTCGGAGACA
CTCCACCGGTGACGCTGGACAGACGCAGCTGCTTCTGGGCACGCAGCTTC
TTCATGTGCTCCACGGTCAGCTCCAGGATGTCGGCCTTCTCCAGCCGGGT
GATGTGCTCGCCCTCCTGGGTCAGGCACTCCACCATGATGTCCTTGAGCT
CGTCCAGGCACTTGTTAATCCTGGCACGGCGCTTACGCTCCAGCATGGGC
TTCATCACCTTGCGGTACTGATAGGTCTTGGACATCTCCATTTCCAGAAC
CATGTCGACTGATAACT

BO01022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14548-PA 588 HLHmbeta-RA 1..585 603..19 2925 100 Minus
CG8361-PA 561 HLHm7-RA 16..113 588..491 340 93.8 Minus
CG8333-PA 618 HLHmgamma-RA 22..119 588..491 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 7..107 591..491 255 90 Minus
CG8346-PA 675 HLHm3-RA 130..196 468..402 210 92.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 978 CG14548-RA 131..715 603..19 2925 100 Minus
E(spl)m3-HLH-RA 1305 CG8346-RA 204..397 591..398 640 88.7 Minus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..289 588..413 460 84.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26005309..26005893 19..603 2925 100 Plus
3R 32079331 3R 26022026..26022219 591..398 640 88.7 Minus
3R 32079331 3R 25999964..26000139 588..413 460 84.1 Minus
3R 32079331 3R 26037178..26037291 588..475 405 90.4 Minus
3R 32079331 3R 26040357..26040416 561..502 180 86.7 Minus
Blast to na_te.dros performed on 2015-02-12 15:58:22 has no hits.

BO01022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:15 Download gff for BO01022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 16..603 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:12 Download gff for BO01022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 16..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:36 Download gff for BO01022.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 12..611 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:38 Download gff for BO01022.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 12..611 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:38 Download gff for BO01022.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26005300..26005900 12..611 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:36 Download gff for BO01022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21831022..21831622 12..611 98   Plus

BO01022.5prime Sequence

617 bp (616 high quality bases) assembled on 2005-11-30

> BO01022.5prime
GAAGTTATCAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATC
AGTACCGCAAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGG
ATTAACAAGTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGAC
CCAGGAGGGCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGC
TGACCGTGGAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTG
TCCAGCGTCACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCAT
CGCTGAGAGTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCA
AAACCTTGGCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTG
ATGAGTCACCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTC
GCTGCCCATTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGG
TCACTCCACCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGC
CCGGCGCCCAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTG
GGCAAGCTTTCTAGACC

BO01022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14548-PA 588 HLHmbeta-RA 1..585 17..601 2925 100 Plus
CG8361-PA 561 HLHm7-RA 16..113 32..129 340 93.8 Plus
CG8333-PA 618 HLHmgamma-RA 22..119 32..129 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 7..107 29..129 255 90 Plus
CG8346-PA 675 HLHm3-RA 130..196 152..218 210 92.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 978 CG14548-RA 131..715 17..601 2925 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 204..397 29..222 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..289 32..207 460 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26005309..26005893 601..17 2925 100 Minus
3R 32079331 3R 26022026..26022219 29..222 640 88.7 Plus
3R 32079331 3R 25999964..26000139 32..207 460 84.1 Plus
3R 32079331 3R 26037178..26037291 32..145 405 90.4 Plus
3R 32079331 3R 26040357..26040416 59..118 180 86.7 Plus
Blast to na_te.dros performed on 2015-02-12 10:08:21 has no hits.

BO01022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:15 Download gff for BO01022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 17..604 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:14 Download gff for BO01022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14548-PA 1..588 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:56 Download gff for BO01022.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 9..608 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:09 Download gff for BO01022.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 124..724 9..608 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:09 Download gff for BO01022.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26005300..26005900 9..608 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:56 Download gff for BO01022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21831022..21831622 9..608 98   Minus

BO01022.complete Sequence

619 bp (619 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629392

> BO01022.complete
GAAGTTATCAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATC
AGTACCGCAAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGG
ATTAACAAGTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGAC
CCAGGAGGGCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGC
TGACCGTGGAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTG
TCCAGCGTCACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCAT
CGCTGAGAGTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCA
AAACCTTGGCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTG
ATGAGTCACCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTC
GCTGCCCATTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGG
TCACTCCACCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGC
CCGGCGCCCAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTG
GGCAAGCTTTCTAGACCAT

BO01022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 588 CG14548-PA 1..585 17..601 2925 100 Plus
E(spl)m3-HLH-RA 675 CG8346-PA 7..200 29..222 640 88.7 Plus
E(spl)mgamma-HLH-RA 618 CG8333-PA 22..197 32..207 460 84.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-RA 978 CG14548-RA 131..715 17..601 2925 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 204..397 29..222 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..289 32..207 460 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26005309..26005893 601..17 2925 100 Minus
3R 32079331 3R 26022026..26022219 29..222 640 88.7 Plus
3R 32079331 3R 25999964..26000139 32..207 460 84.1 Plus
3R 32079331 3R 26037178..26037291 32..145 405 90.4 Plus
3R 32079331 3R 26040357..26040416 59..118 180 86.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:55:40 has no hits.

BO01022.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:42 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmbeta-RA 1..588 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:46 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmbeta-RA 124..724 9..608 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:59 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 131..715 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:42 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmbeta-RA 124..724 9..608 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:14 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mbeta-HLH-RA 131..715 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:14 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26005306..26005893 17..603 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:59 Download gff for BO01022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21831028..21831615 17..603 99   Minus

BO01022.pep Sequence

Translation from 16 to 619

> BO01022.pep
MVLEMEMSKTYQYRKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEH
ITRLEKADILELTVEHMKKLRAQKQLRLSSVTGGVSPSADPKLSIAESFR
AGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLNYLQVVVPSLPIGV
PLQAPVEDQAMVTPPPSECDSLESGACSPAPSEASSTSGPMWRPWASFLD
H

BO01022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mbeta-HLH-PA 195 CG14548-PA 1..195 1..195 999 100 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 8..205 6..195 475 50.5 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 3..224 5..195 422 45.5 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 1..186 1..195 412 46.3 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..173 7..195 308 40 Plus