Clone Sequence Records
BO01024.5prime Sequence
620 bp (619 high quality bases) assembled on 2005-11-30
> BO01024.5prime
GAAGTTATCAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACG
GCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCC
AGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCC
GATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCG
GTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAAT
CACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACC
GCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACG
AGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGAC
ACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGAT
CGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGA
TACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTC
ACGGAGGCGCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAA
ATACGCAAGCTTTCTAGACC
BO01024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17358-PB | 591 | Taf12-RB | 1..588 | 17..604 | 2940 | 100 | Plus |
CG17358-PC | 591 | Taf12-RC | 1..588 | 17..604 | 2940 | 100 | Plus |
CG17358-PA | 591 | Taf12-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 1234 | CG17358-RA | 478..1065 | 17..604 | 2940 | 100 | Plus |
Taf12-RB | 1066 | CG17358-RB | 310..897 | 17..604 | 2940 | 100 | Plus |
Taf12-RE | 897 | CG17358-RE | 170..728 | 46..604 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11678555..11678872 | 604..287 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 11678944..11679213 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:41:23 has no hits.
BO01024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:19 Download gff for
BO01024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:20 Download gff for
BO01024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17358-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:31:40 Download gff for
BO01024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 306..897 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:42 Download gff for
BO01024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 306..897 | 10..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:42 Download gff for
BO01024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11678555..11678872 | 287..604 | 100 | <- | Minus |
3R | 11678944..11679217 | 10..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:31:40 Download gff for
BO01024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7504277..7504594 | 287..604 | 100 | <- | Minus |
arm_3R | 7504666..7504939 | 10..286 | 98 | | Minus |
BO01024.3prime Sequence
337 bp (253 high quality bases) assembled on 2005-11-30
> BO01024.3prime
ATGGTCTAGAAAGCTTGCGTATTTCTTGATCGTTTTCCGTATGAGGGCAA
GGCGCTGTTTGTGCGCCTCCGTGACAGCTGCCCGCTTGTAGGGACGCAGT
TCGTCCGTACCGAAGCCGGGTATCCACATGTTGTACTTCCGCTCAAAGTG
CAGCTGCACGTCGCGCACCTCGATCTTGTTAGACTTTCGGTGCTTGGCGA
AGGCGCTCGTCGACTTGACGGTGTCCTCGACAAAGTCGTCGATGATCTGA
AGCAGAAGCTCCCTCACATCCTCGTCCAGCTGCGTGGTGGTATCCACCTC
TCGGACGAGCTCTGTGAGACGCGGTTTGGTAAGCATG
BO01024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17358-PB | 591 | Taf12-RB | 345..588 | 262..19 | 1220 | 100 | Minus |
CG17358-PC | 591 | Taf12-RC | 345..588 | 262..19 | 1220 | 100 | Minus |
CG17358-PA | 591 | Taf12-RA | 345..588 | 262..19 | 1220 | 100 | Minus |
CG17358-PB | 591 | Taf12-RB | 270..341 | 337..266 | 360 | 100 | Minus |
CG17358-PC | 591 | Taf12-RC | 270..341 | 337..266 | 360 | 100 | Minus |
CG17358-PA | 591 | Taf12-RA | 270..341 | 337..266 | 360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RE | 897 | CG17358-RE | 410..728 | 337..19 | 1550 | 99.4 | Minus |
Taf12-RD | 852 | CG17358-RD | 365..683 | 337..19 | 1550 | 99.4 | Minus |
Taf12-RA | 1234 | CG17358-RA | 747..1065 | 337..19 | 1550 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11678555..11678872 | 19..336 | 1545 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:41:16 has no hits.
BO01024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:18 Download gff for
BO01024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-PA | 270..591 | 18..337 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:18 Download gff for
BO01024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17358-PA | 270..591 | 18..337 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:31:38 Download gff for
BO01024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 747..1065 | 19..337 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:19 Download gff for
BO01024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 747..1065 | 19..337 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:19 Download gff for
BO01024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11678555..11678872 | 19..337 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:31:38 Download gff for
BO01024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7504277..7504594 | 19..337 | 99 | | Plus |
BO01024.complete Sequence
622 bp (622 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629393
> BO01024.complete
GAAGTTATCAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACG
GCGTCGCCGAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCC
AGCGGACTGCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCC
GATGACCAACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCG
GTTTGGGTACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAAT
CACACATCATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACC
GCGTCTCACAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACG
AGGATGTTGAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGAC
ACCGTCAAGTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGAT
CGAGGTGCGCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGA
TACCCGGCTTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTC
ACGGAGGCGCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAA
ATACGCAAGCTTTCTAGACCAT
BO01024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 591 | CG17358-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Taf12-RB | 591 | CG17358-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
Taf12-RE | 483 | CG17358-PE | 1..480 | 125..604 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-RA | 1234 | CG17358-RA | 478..1065 | 17..604 | 2940 | 100 | Plus |
Taf12-RB | 1066 | CG17358-RB | 310..897 | 17..604 | 2940 | 100 | Plus |
Taf12-RE | 897 | CG17358-RE | 170..728 | 46..604 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11678555..11678872 | 604..287 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 11678944..11679213 | 286..17 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:37 has no hits.
BO01024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:29 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:15 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 422..1013 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:00 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 310..897 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:30 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RA | 422..1013 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:54 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf12-RB | 310..897 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:54 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11678553..11678872 | 287..606 | 99 | <- | Minus |
3R | 11678944..11679213 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:00 Download gff for
BO01024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7504275..7504594 | 287..606 | 99 | <- | Minus |
arm_3R | 7504666..7504935 | 17..286 | 100 | | Minus |
BO01024.pep Sequence
Translation from 16 to 622
> BO01024.pep
MSDLFTTFDSNGVAEHHLHHNHNSTSSASGLLHDPPMASPSQHSPMTNNS
NSSSQNGGPVSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKPRLTEL
VREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDV
QLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIRKTIKKYASFL
DH
BO01024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf12-PA | 196 | CG17358-PA | 1..196 | 1..196 | 1018 | 100 | Plus |
Taf12-PB | 196 | CG17358-PB | 1..196 | 1..196 | 1018 | 100 | Plus |
Taf12-PE | 160 | CG17358-PE | 1..160 | 37..196 | 819 | 100 | Plus |
Taf12-PD | 160 | CG17358-PD | 1..160 | 37..196 | 819 | 100 | Plus |