Clone BO01028 Report

Search the DGRC for BO01028

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptBgb-RA
Protein status:BO01028.pep: full length peptide match
Sequenced Size:673

Clone Sequence Records

BO01028.3prime Sequence

671 bp (670 high quality bases) assembled on 2005-11-30

> BO01028.3prime
ATGGTCTAGAAAGCTTGCACGACGCCACATGCTGGCGCCAACGCCAATGC
CTCCGGAGGCCACGCCCCGTCGCACTGCCTCCATCTCGTCCTGTCGATTG
TCACGGTAGGCGCGCTTAGTGTCCTCGAACTCACGCAGTCGCTGGTTGTA
GCGATCGATCTGATCCCGCAGAATGGCGTCCTCGTGCATGGCGCGCCGCT
CGTCATACTCCAGACAGCCAACTCCGTCCAGTCGTTCCAGGTCTATCCAT
CCACGGAACCGGACACAAACCCCGTTCATGATAAAGTAGGACTTGATGTG
CACCTTGCCGTGCTCCTTGTCAAAGTCGCACTCCTTGTCGTGCAGGTACG
GGTTCTGGTTGGCGTTGAACACCAGCTGCAGATTGGTGCCCGATGCCACG
AAGCTGGCCTCCGTGTGTCCTTCGCGACATCCGTTCATGAAGCGCACCTG
CCGCTCCTCGATGCTTCGTTCCCGATAGCCCGTGTACCGAACCTCGCTCT
CCCGACTGAGCCTCCGGAAAAGTTCGTCGCTCTCGAACTTGGACTTCTGG
TCCGGGACCACACGAGGCATCTTGAAGATGAAGCGCGGCTTTGGCTGTTC
ATACAATCCGATGGTGTCGTAGGGTATCATATTGGCAAGTGCCGCCTCGT
TCATCATGTCGACTGATAACT

BO01028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7959-PA 642 Bgb-RA 1..639 657..19 3195 100 Minus
CG7960-PA 642 Bro-RA 97..155 582..524 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 1242 CG7959-RB 285..923 657..19 3195 100 Minus
Bgb-RA 1242 CG7959-RA 285..923 657..19 3195 100 Minus
Bro-RA 744 CG7960-RA 110..575 605..140 470 75 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1639995..1640633 657..19 3195 100 Minus
3L 28110227 3L 1647978..1648443 605..140 425 72.7 Minus
Blast to na_te.dros performed 2015-02-12 05:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3766..3819 609..662 108 66.7 Plus

BO01028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:24 Download gff for BO01028.3prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-PA 1..642 18..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:28 Download gff for BO01028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7959-PA 1..642 18..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:48 Download gff for BO01028.3prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..928 11..663 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:47 Download gff for BO01028.3prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..928 11..663 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:47 Download gff for BO01028.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1639989..1640638 11..663 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:48 Download gff for BO01028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1639989..1640638 11..663 98   Minus

BO01028.5prime Sequence

671 bp (670 high quality bases) assembled on 2005-11-29

> BO01028.5prime
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTGCAAGCTTTCTAGACC

BO01028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7959-PA 642 Bgb-RA 1..639 17..655 3195 100 Plus
CG7960-PA 642 Bro-RA 97..155 92..150 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 1242 CG7959-RB 285..923 17..655 3195 100 Plus
Bgb-RA 1242 CG7959-RA 285..923 17..655 3195 100 Plus
Bro-RA 744 CG7960-RA 110..575 69..534 470 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1639995..1640633 17..655 3195 100 Plus
3L 28110227 3L 1647978..1648443 69..534 425 72.7 Plus
Blast to na_te.dros performed 2015-02-11 18:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3766..3819 65..12 108 66.7 Minus

BO01028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:25 Download gff for BO01028.5prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:29 Download gff for BO01028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7959-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:47 Download gff for BO01028.5prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..928 11..663 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:40:49 Download gff for BO01028.5prime
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 279..928 11..663 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:40:49 Download gff for BO01028.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1639989..1640638 11..663 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:47 Download gff for BO01028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1639989..1640638 11..663 98   Plus

BO01028.complete Sequence

673 bp (673 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629394

> BO01028.complete
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTGCAAGCTTTCTAGACCAT

BO01028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 762 CG7959-PB 1..639 17..655 3195 100 Plus
Bgb-RA 642 CG7959-PA 1..639 17..655 3195 100 Plus
Bro-RA 642 CG7960-PA 74..539 69..534 425 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-RB 1242 CG7959-RB 285..923 17..655 3195 100 Plus
Bgb-RA 1242 CG7959-RA 285..923 17..655 3195 100 Plus
Bro-RA 744 CG7960-RA 110..575 69..534 425 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1639995..1640633 17..655 3195 100 Plus
3L 28110227 3L 1647978..1648443 69..534 425 72.7 Plus
Blast to na_te.dros performed 2014-11-27 13:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3766..3819 65..12 108 66.7 Minus

BO01028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:34 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:38 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 288..937 11..663 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:10 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 285..923 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:34 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 288..937 11..663 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:55 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
Bgb-RA 285..923 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:55 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1639995..1640633 17..657 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:10 Download gff for BO01028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1639995..1640633 17..657 99   Plus

BO01028.pep Sequence

Translation from 16 to 673

> BO01028.pep
MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRL
SRESEVRYTGYRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNAN
QNPYLHDKECDFDKEHGKVHIKSYFIMNGVCVRFRGWIDLERLDGVGCLE
YDERRAMHEDAILRDQIDRYNQRLREFEDTKRAYRDNRQDEMEAVRRGVA
SGGIGVGASMWRRASFLDH

BO01028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Bgb-PA 213 CG7959-PA 1..213 1..213 1132 100 Plus
Bgb-PB 253 CG7959-PB 1..213 1..213 1132 100 Plus
Bro-PA 213 CG7960-PA 11..202 5..198 684 65.1 Plus