Clone Sequence Records
BO01028.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-11-30
> BO01028.3prime
ATGGTCTAGAAAGCTTGCACGACGCCACATGCTGGCGCCAACGCCAATGC
CTCCGGAGGCCACGCCCCGTCGCACTGCCTCCATCTCGTCCTGTCGATTG
TCACGGTAGGCGCGCTTAGTGTCCTCGAACTCACGCAGTCGCTGGTTGTA
GCGATCGATCTGATCCCGCAGAATGGCGTCCTCGTGCATGGCGCGCCGCT
CGTCATACTCCAGACAGCCAACTCCGTCCAGTCGTTCCAGGTCTATCCAT
CCACGGAACCGGACACAAACCCCGTTCATGATAAAGTAGGACTTGATGTG
CACCTTGCCGTGCTCCTTGTCAAAGTCGCACTCCTTGTCGTGCAGGTACG
GGTTCTGGTTGGCGTTGAACACCAGCTGCAGATTGGTGCCCGATGCCACG
AAGCTGGCCTCCGTGTGTCCTTCGCGACATCCGTTCATGAAGCGCACCTG
CCGCTCCTCGATGCTTCGTTCCCGATAGCCCGTGTACCGAACCTCGCTCT
CCCGACTGAGCCTCCGGAAAAGTTCGTCGCTCTCGAACTTGGACTTCTGG
TCCGGGACCACACGAGGCATCTTGAAGATGAAGCGCGGCTTTGGCTGTTC
ATACAATCCGATGGTGTCGTAGGGTATCATATTGGCAAGTGCCGCCTCGT
TCATCATGTCGACTGATAACT
BO01028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7959-PA | 642 | Bgb-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
CG7960-PA | 642 | Bro-RA | 97..155 | 582..524 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 1242 | CG7959-RB | 285..923 | 657..19 | 3195 | 100 | Minus |
Bgb-RA | 1242 | CG7959-RA | 285..923 | 657..19 | 3195 | 100 | Minus |
Bro-RA | 744 | CG7960-RA | 110..575 | 605..140 | 470 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1639995..1640633 | 657..19 | 3195 | 100 | Minus |
3L | 28110227 | 3L | 1647978..1648443 | 605..140 | 425 | 72.7 | Minus |
Blast to na_te.dros performed 2015-02-12 05:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3766..3819 | 609..662 | 108 | 66.7 | Plus |
BO01028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:24 Download gff for
BO01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:28 Download gff for
BO01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7959-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:48 Download gff for
BO01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..928 | 11..663 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:47 Download gff for
BO01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..928 | 11..663 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:47 Download gff for
BO01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1639989..1640638 | 11..663 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:48 Download gff for
BO01028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1639989..1640638 | 11..663 | 98 | | Minus |
BO01028.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-11-29
> BO01028.5prime
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTGCAAGCTTTCTAGACC
BO01028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7959-PA | 642 | Bgb-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG7960-PA | 642 | Bro-RA | 97..155 | 92..150 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 1242 | CG7959-RB | 285..923 | 17..655 | 3195 | 100 | Plus |
Bgb-RA | 1242 | CG7959-RA | 285..923 | 17..655 | 3195 | 100 | Plus |
Bro-RA | 744 | CG7960-RA | 110..575 | 69..534 | 470 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1639995..1640633 | 17..655 | 3195 | 100 | Plus |
3L | 28110227 | 3L | 1647978..1648443 | 69..534 | 425 | 72.7 | Plus |
Blast to na_te.dros performed 2015-02-11 18:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3766..3819 | 65..12 | 108 | 66.7 | Minus |
BO01028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:25 Download gff for
BO01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:29 Download gff for
BO01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7959-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:47 Download gff for
BO01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..928 | 11..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:40:49 Download gff for
BO01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 279..928 | 11..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:40:49 Download gff for
BO01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1639989..1640638 | 11..663 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:47 Download gff for
BO01028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1639989..1640638 | 11..663 | 98 | | Plus |
BO01028.complete Sequence
673 bp (673 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629394
> BO01028.complete
GAAGTTATCAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATAC
CCTACGACACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTC
AAGATGCCTCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGA
ACTTTTCCGGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATC
GGGAACGAAGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGC
GAAGGACACACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCT
GGTGTTCAACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACT
TTGACAAGGAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAAC
GGGGTTTGTGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGG
AGTTGGCTGTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCA
TTCTGCGGGATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAG
GACACTAAGCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGT
GCGACGGGGCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGC
GTCGTGCAAGCTTTCTAGACCAT
BO01028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 762 | CG7959-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Bgb-RA | 642 | CG7959-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Bro-RA | 642 | CG7960-PA | 74..539 | 69..534 | 425 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-RB | 1242 | CG7959-RB | 285..923 | 17..655 | 3195 | 100 | Plus |
Bgb-RA | 1242 | CG7959-RA | 285..923 | 17..655 | 3195 | 100 | Plus |
Bro-RA | 744 | CG7960-RA | 110..575 | 69..534 | 425 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1639995..1640633 | 17..655 | 3195 | 100 | Plus |
3L | 28110227 | 3L | 1647978..1648443 | 69..534 | 425 | 72.7 | Plus |
Blast to na_te.dros performed 2014-11-27 13:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3766..3819 | 65..12 | 108 | 66.7 | Minus |
BO01028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:42:34 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:38 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 288..937 | 11..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:10 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 285..923 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:42:34 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 288..937 | 11..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:55 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bgb-RA | 285..923 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:55 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1639995..1640633 | 17..657 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:10 Download gff for
BO01028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1639995..1640633 | 17..657 | 99 | | Plus |
BO01028.pep Sequence
Translation from 16 to 673
> BO01028.pep
MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRL
SRESEVRYTGYRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNAN
QNPYLHDKECDFDKEHGKVHIKSYFIMNGVCVRFRGWIDLERLDGVGCLE
YDERRAMHEDAILRDQIDRYNQRLREFEDTKRAYRDNRQDEMEAVRRGVA
SGGIGVGASMWRRASFLDH
BO01028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bgb-PA | 213 | CG7959-PA | 1..213 | 1..213 | 1132 | 100 | Plus |
Bgb-PB | 253 | CG7959-PB | 1..213 | 1..213 | 1132 | 100 | Plus |
Bro-PA | 213 | CG7960-PA | 11..202 | 5..198 | 684 | 65.1 | Plus |