Clone Sequence Records
BO01030.5prime Sequence
683 bp (682 high quality bases) assembled on 2005-11-30
> BO01030.5prime
GAAGTTATCAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCAT
ATCTCGAGGCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATT
CAGTTCAAGCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAA
CAACAACAACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAT
TATGCAGCAACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGC
CGCGGCGGCGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGAT
TCGAAGGAGGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCC
GAGCAACTGACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGA
GCCCTATGTCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCC
TGCAACAGGTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCA
AAGTCCACCAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGC
CCGCAAGGACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGC
CCTATATTTGTGAAGTAGCAAGCTTTCTAGACC
BO01030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-PA | 654 | CG12071-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
CG12071-PB | 1737 | CG12071-RB | 1..650 | 17..666 | 3250 | 100 | Plus |
CG6654-PA | 1920 | CG6654-RA | 1287..1313 | 622..648 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 2640 | CG12071-RE | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RD | 2155 | CG12071-RD | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RG | 2155 | CG12071-RG | 279..930 | 15..666 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30879354..30879893 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30879130..30879242 | 667..555 | 565 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 108..277 | 348 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 73..261 | 172 | 59.2 | Plus |
BO01030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:26 Download gff for
BO01030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:33 Download gff for
BO01030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:32:40 Download gff for
BO01030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RB | 123..784 | 11..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:12 Download gff for
BO01030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RG | 275..936 | 11..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:12 Download gff for
BO01030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30879124..30879242 | 555..674 | 98 | <- | Minus |
3R | 30879354..30879897 | 11..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:32:40 Download gff for
BO01030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26704846..26704964 | 555..674 | 98 | <- | Minus |
arm_3R | 26705076..26705619 | 11..554 | 99 | | Minus |
BO01030.3prime Sequence
683 bp (682 high quality bases) assembled on 2005-11-30
> BO01030.3prime
ATGGTCTAGAAAGCTTGCTACTTCACAAATATAGGGCTTCTCGCCGGTGT
GGATGCGCATGTGGATGGTCAGCTTGTCCTTGCGGGCGAGTCCTTTGCCG
CAGACCGTGCACTCGAATGCCTTGTTGGTGGACTTTGAGGGATTTGTCTT
GCGCACCCCGGAGGATGCCTGTTGCACCTGTTGCAGGGCCTTGAGTCGAC
TGGCGGGGTGCATGGAGCCCCCCTCGACATAGGGCTCTGTGAAGGGGATG
AGGTTGGGCTTGGGGATGTTGTAGGTCAGTTGCTCGGCCGCCGACCAGGT
TCCCAGACTCTGCAGGACCCGCACGCCTCCTTCGAATCCCATTCCGTCGT
CCGGAACTGTGAAGGTGCTCTCCCCCGCCGCCGCGGCTGCCACATTGGAG
GAACTGATCTGCGGCACCTTGATGGTTGCTGCATAATGCTGCTGCTGCTG
TTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCT
GCATGTTGCCATTGTTCTGGCTGTTGTTGTTGTTGTTGGCCGTGGGGGAG
TTCTGTTGCTGGGACGTCTGCTGCTGCTTGAACTGAATGGCCGCCTGGGC
CATCTGCTGCTGCACCGCCATGTGCGCCTCGAGATATGCGTTCTTCTGGG
CAACCGTCATCTTATCCATGTCGACTGATAACT
BO01030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-PA | 654 | CG12071-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
CG12071-PB | 1737 | CG12071-RB | 1..650 | 669..20 | 3250 | 100 | Minus |
CG6654-PA | 1920 | CG6654-RA | 1287..1313 | 64..38 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 2640 | CG12071-RE | 279..930 | 671..20 | 3260 | 100 | Minus |
CG12071-RD | 2155 | CG12071-RD | 279..930 | 671..20 | 3260 | 100 | Minus |
CG12071-RG | 2155 | CG12071-RG | 279..930 | 671..20 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30879354..30879893 | 132..671 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 30879130..30879242 | 19..131 | 565 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 578..409 | 348 | 72.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 613..425 | 172 | 59.2 | Minus |
BO01030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:26 Download gff for
BO01030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:31 Download gff for
BO01030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:59 Download gff for
BO01030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RB | 123..784 | 15..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:29 Download gff for
BO01030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RG | 275..936 | 15..675 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:29 Download gff for
BO01030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30879124..30879242 | 12..131 | 98 | <- | Plus |
3R | 30879354..30879897 | 132..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:59 Download gff for
BO01030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26704846..26704964 | 12..131 | 98 | <- | Plus |
arm_3R | 26705076..26705619 | 132..675 | 99 | | Plus |
BO01030.complete Sequence
685 bp (685 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629395
> BO01030.complete
GAAGTTATCAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCAT
ATCTCGAGGCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATT
CAGTTCAAGCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAA
CAACAACAACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAT
TATGCAGCAACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGC
CGCGGCGGCGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGAT
TCGAAGGAGGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCC
GAGCAACTGACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGA
GCCCTATGTCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCC
TGCAACAGGTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCA
AAGTCCACCAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGC
CCGCAAGGACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGC
CCTATATTTGTGAAGTAGCAAGCTTTCTAGACCAT
BO01030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 1746 | CG12071-PE | 1..650 | 17..666 | 3250 | 100 | Plus |
CG12071-RD | 1746 | CG12071-PD | 1..650 | 17..666 | 3250 | 100 | Plus |
CG12071-RG | 1017 | CG12071-PG | 1..650 | 17..666 | 3250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 2640 | CG12071-RE | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RD | 2155 | CG12071-RD | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RG | 2155 | CG12071-RG | 279..930 | 15..666 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30879354..30879893 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30879130..30879242 | 667..555 | 565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 108..277 | 348 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 73..261 | 172 | 59.2 | Plus |
BO01030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:12 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:58 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RA | 123..785 | 11..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:16 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RB | 129..779 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:12 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RA | 123..785 | 11..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:24 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RG | 281..931 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:24 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30879128..30879242 | 555..669 | 98 | <- | Minus |
3R | 30879354..30879891 | 17..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:16 Download gff for
BO01030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26704850..26704964 | 555..669 | 98 | <- | Minus |
arm_3R | 26705076..26705613 | 17..554 | 100 | | Minus |
BO01030.pep Sequence
Translation from 16 to 685
> BO01030.pep
MDKMTVAQKNAYLEAHMAVQQQMAQAAIQFKQQQTSQQQNSPTANNNNNS
QNNGNMQQQQQQQQQQQQQQQQQQQQQHYAATIKVPQISSSNVAAAAAGE
STFTVPDDGMGFEGGVRVLQSLGTWSAAEQLTYNIPKPNLIPFTEPYVEG
GSMHPASRLKALQQVQQASSGVRKTNPSKSTNKAFECTVCGKGLARKDKL
TIHMRIHTGEKPYICEVASFLDH
BO01030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-PG | 338 | CG12071-PG | 1..219 | 1..219 | 1120 | 99.1 | Plus |
CG12071-PF | 338 | CG12071-PF | 1..219 | 1..219 | 1120 | 99.1 | Plus |
CG12071-PE | 581 | CG12071-PE | 1..219 | 1..219 | 1120 | 99.1 | Plus |
CG12071-PD | 581 | CG12071-PD | 1..219 | 1..219 | 1120 | 99.1 | Plus |
Aef1-PB | 308 | CG5683-PB | 29..216 | 38..217 | 182 | 30.3 | Plus |