Clone Sequence Records
BO01032.3prime Sequence
728 bp (727 high quality bases) assembled on 2005-11-30
> BO01032.3prime
ATGGTCTAGAAAGCTTGCACTGCTGCTAGTCGGTGGTTCGTTGTGAGGTC
CTTGAAGAAGAGCCTGCAACTTGGCAGCCGCCGGAAATGCACCCAAATCC
AGTGGCGCTGCTCCCGTGGTGCTTTGTATATAGGCCAAAAGTCTTCTCAA
CTCCTCGAGAGCATTTTGCTGCATCAGAATGTAGTTCTTAGCCAGCAGCA
AGGTGGCTATTTTCGACAGCTTTCGCACAGAAGGCGAATGGGCATAGGGA
ATCACACTTCTCAGCTCATCAAGGGCATCATTCAAATCGTGCATCCTTCG
TCGTTCCCGGGCATTTATGTTCAGCCTTACCGTCTTTCCCTGGCGGTTTT
TCTGCTTGCCACTGTTGGAGCCACTTCCGCTGGCGCCACCACTGGACACG
GCCACCGTGGTGGTGCCACCACTGATGGCAATGGCTGCGATGGCGGCGGC
CGTGGGACTCAATGGCTTCTCCGGAGCACTGGGCCCTGGTTTGTTCTCAT
CCGTCGGTGGCTGCTGGGACATGCCCATTCCCTGGGCATAGAAACCACCC
AGACCAACCGATCCAAGTGGCGTCCGACGGCCGGGGACGCTTTGTGGTGG
GCTGGCGGTGGGTGCTGGATGCTGGCCACCAAGCATATTGGCTGTAGGAG
GTATTGGCATGTGTCCGTGGTTGGGGAGACCGGGAAAACCAAAAGCAAGA
TTTGAGGGATCCATGTCGACTGATAACT
BO01032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5545-PA | 699 | Oli-RA | 1..696 | 714..19 | 3455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 1068 | CG5545-RC | 101..796 | 714..19 | 3465 | 99.9 | Minus |
Oli-RB | 1174 | CG5545-RB | 207..902 | 714..19 | 3465 | 99.9 | Minus |
Oli-RD | 1392 | CG5545-RD | 425..1120 | 714..19 | 3465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17590240..17590811 | 714..143 | 2845 | 99.8 | Minus |
2L | 23513712 | 2L | 17590870..17590995 | 144..19 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:08:52 has no hits.
BO01032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:29 Download gff for
BO01032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:38 Download gff for
BO01032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5545-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:20 Download gff for
BO01032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 839..1537 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:42 Download gff for
BO01032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RD | 425..1123 | 15..714 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:42 Download gff for
BO01032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17590240..17590811 | 143..714 | 99 | -> | Minus |
2L | 17590872..17590998 | 15..142 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:20 Download gff for
BO01032.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17590240..17590811 | 143..714 | 99 | -> | Minus |
arm_2L | 17590872..17590998 | 15..142 | 98 | | Minus |
BO01032.5prime Sequence
728 bp (727 high quality bases) assembled on 2005-11-30
> BO01032.5prime
GAAGTTATCAGTCGACATGGATCCCTCAAATCTTGCTTTTGGTTTTCCCG
GTCTCCCCAACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTT
GGTGGCCAGCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGG
CCGTCGGACGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGG
GAATGGGCATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCC
AGTGCTCCGGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCAT
TGCCATCAGTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCA
GCGGAAGTGGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACG
GTAAGGCTGAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAA
TGATGCCCTTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTT
CTGTGCGAAAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTAC
ATTCTGATGCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTA
TATACAAAGCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGG
CGGCTGCCAAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCG
ACTAGCAGCAGTGCAAGCTTTCTAGACC
BO01032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5545-PA | 699 | Oli-RA | 1..696 | 17..712 | 3455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 1068 | CG5545-RC | 101..796 | 17..712 | 3465 | 99.9 | Plus |
Oli-RB | 1174 | CG5545-RB | 207..902 | 17..712 | 3465 | 99.9 | Plus |
Oli-RD | 1392 | CG5545-RD | 425..1120 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17590240..17590811 | 17..588 | 2845 | 99.8 | Plus |
2L | 23513712 | 2L | 17590870..17590995 | 587..712 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:14:35 has no hits.
BO01032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:30 Download gff for
BO01032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-PA | 1..699 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:40 Download gff for
BO01032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5545-PA | 1..699 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:32:43 Download gff for
BO01032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 839..1537 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:57 Download gff for
BO01032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RD | 425..1123 | 17..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:57 Download gff for
BO01032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17590240..17590811 | 17..588 | 99 | -> | Plus |
2L | 17590872..17590998 | 589..716 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:32:43 Download gff for
BO01032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17590240..17590811 | 17..588 | 99 | -> | Plus |
arm_2L | 17590872..17590998 | 589..716 | 98 | | Plus |
BO01032.complete Sequence
730 bp (730 high quality bases) assembled on 2005-06-24
GenBank Submission: FJ629396
> BO01032.complete
GAAGTTATCAGTCGACATGGATCCCTCAAATCTTGCTTTTGGTTTTCCCG
GTCTCCCCAACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTT
GGTGGCCAGCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGG
CCGTCGGACGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGG
GAATGGGCATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCC
AGTGCTCCGGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCAT
TGCCATCAGTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCA
GCGGAAGTGGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACG
GTAAGGCTGAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAA
TGATGCCCTTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTT
CTGTGCGAAAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTAC
ATTCTGATGCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTA
TATACAAAGCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGG
CGGCTGCCAAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCG
ACTAGCAGCAGTGCAAGCTTTCTAGACCAT
BO01032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 699 | CG5545-PC | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Oli-RB | 699 | CG5545-PB | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Oli-RD | 699 | CG5545-PD | 1..696 | 17..712 | 3465 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-RC | 1068 | CG5545-RC | 101..796 | 17..712 | 3465 | 99.9 | Plus |
Oli-RB | 1174 | CG5545-RB | 207..902 | 17..712 | 3465 | 99.9 | Plus |
Oli-RD | 1392 | CG5545-RD | 425..1120 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17590240..17590811 | 17..588 | 2845 | 99.8 | Plus |
2L | 23513712 | 2L | 17590870..17590995 | 587..712 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:30:31 has no hits.
BO01032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:09 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 1..699 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:12 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 734..1432 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:04 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 839..1534 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:09 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RA | 734..1432 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:16 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oli-RD | 425..1120 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:16 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17590240..17590811 | 17..588 | 99 | -> | Plus |
2L | 17590872..17590995 | 589..714 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:04 Download gff for
BO01032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17590240..17590811 | 17..588 | 99 | -> | Plus |
arm_2L | 17590872..17590995 | 589..714 | 98 | | Plus |
BO01032.pep Sequence
Translation from 16 to 730
> BO01032.pep
MDPSNLAFGFPGLPNHGHMPIPPTANMLGGQHPAPTASPPQSVPGRRTPL
GSVGLGGFYAQGMGMSQQPPTDENKPGPSAPEKPLSPTAAAIAAIAISGG
TTTVAVSSGGASGSGSNSGKQKNRQGKTVRLNINARERRRMHDLNDALDE
LRSVIPYAHSPSVRKLSKIATLLLAKNYILMQQNALEELRRLLAYIQSTT
GAAPLDLGAFPAAAKLQALLQGPHNEPPTSSSASFLDH
BO01032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oli-PC | 232 | CG5545-PC | 1..232 | 1..232 | 1194 | 100 | Plus |
Oli-PB | 232 | CG5545-PB | 1..232 | 1..232 | 1194 | 100 | Plus |
Oli-PD | 232 | CG5545-PD | 1..232 | 1..232 | 1194 | 100 | Plus |
Oli-PA | 232 | CG5545-PA | 1..232 | 1..232 | 1194 | 100 | Plus |
dimm-PB | 390 | CG8667-PB | 123..206 | 102..180 | 158 | 45.3 | Plus |