Clone Sequence Records
BO01035.3prime Sequence
791 bp (790 high quality bases) assembled on 2005-11-30
> BO01035.3prime
ATGGTCTAGAAAGCTTGCGTTGGTCACAAACTCAAACTCCTCCTCCTCAC
GTTCCCGCTTGACGGCCACTCCAACGCCAGATGATCCTCCTCCTCCTCCT
CCTCCGCTGGCACTTCCTGCTCCCGAACCGGATGCGCCAGCGATGCTGCC
CACGGCCGCCGCATCGCTGTCCACCTCCATCTTGAGATCTCCGCCGGCGC
CGGTGCTCTCGCTCTTAACCTCCTGACCACCGCCGCCCCCAGATCCGCCG
GAGCTGCCCACCGTTTTCGTTGTCGTAGTGGTGGTAAACTTGATGACGGG
CTTGGGAATGGTCACCACCTGCTGCTTGGCCACCACGGAGTGTGGCCTCT
TCGGACCATTGGCGCTGGAGACGGGCTTAACGACGGTCTTCAGTGGACGG
CCCTCCACCGCCGACTTGGTCATTTTCTTGGGCTGATTAGTGGCCCGCAG
TTTGTAGTTGACGCCGGTGAGACAGTAGCGGTCGGGCGGCAGTCGGAGAC
CGCAGTGCGGCTTAATGGGTGGCAGGGGCATGCTGTTGCGCACGTCGGCC
ACCTTGGCTAGAACGTGGCGCTCCAACGGCCCGGTGAAGCTCTTGTCCAG
CGTAACCTCGGTGGCCAGACGCACGTCGTCCAAGTCGATGGTCTTCTTGC
GCGCATGGTTGGCGTACACCTTGGCGTCGTCCAGAATGCAGGTTACATAG
CGGAAGGTGAACTCCAGCAGTTGGTTGACCACGCGCGGCTCGTACTCCTG
GACATTCAGCTCCTTCAGGATGGACATGTCGACTGATAACT
BO01035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6474-PA | 837 | e(y)1-RA | 75..834 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(y)1-RA | 1124 | CG6474-RA | 173..932 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17842474..17843156 | 701..19 | 3415 | 100 | Minus |
X | 23542271 | X | 17842333..17842410 | 778..701 | 390 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 1457..1487 | 69..99 | 110 | 83.9 | Plus |
BO01035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:35 Download gff for
BO01035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6474-PA | 70..837 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:47 Download gff for
BO01035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6474-PA | 70..837 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:11 Download gff for
BO01035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 168..936 | 13..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:38 Download gff for
BO01035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 168..936 | 13..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:38 Download gff for
BO01035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17842328..17842409 | 702..783 | 97 | -> | Minus |
X | 17842474..17843160 | 13..701 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:11 Download gff for
BO01035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17736361..17736442 | 702..783 | 97 | -> | Minus |
arm_X | 17736507..17737193 | 13..701 | 99 | | Minus |
BO01035.5prime Sequence
791 bp (790 high quality bases) assembled on 2005-11-30
> BO01035.5prime
GAAGTTATCAGTCGACATGTCCATCCTGAAGGAGCTGAATGTCCAGGAGT
ACGAGCCGCGCGTGGTCAACCAACTGCTGGAGTTCACCTTCCGCTATGTA
ACCTGCATTCTGGACGACGCCAAGGTGTACGCCAACCATGCGCGCAAGAA
GACCATCGACTTGGACGACGTGCGTCTGGCCACCGAGGTTACGCTGGACA
AGAGCTTCACCGGGCCGTTGGAGCGCCACGTTCTAGCCAAGGTGGCCGAC
GTGCGCAACAGCATGCCCCTGCCACCCATTAAGCCGCACTGCGGTCTCCG
ACTGCCGCCCGACCGCTACTGTCTCACCGGCGTCAACTACAAACTGCGGG
CCACTAATCAGCCCAAGAAAATGACCAAGTCGGCGGTGGAGGGCCGTCCA
CTGAAGACCGTCGTTAAGCCCGTCTCCAGCGCCAATGGTCCGAAGAGGCC
ACACTCCGTGGTGGCCAAGCAGCAGGTGGTGACCATTCCCAAGCCCGTCA
TCAAGTTTACCACCACTACGACAACGAAAACGGTGGGCAGCTCCGGCGGA
TCTGGGGGCGGCGGTGGTCAGGAGGTTAAGAGCGAGAGCACCGGCGCCGG
CGGAGATCTCAAGATGGAGGTGGACAGCGATGCGGCGGCCGTGGGCAGCA
TCGCTGGCGCATCCGGTTCGGGAGCAGGAAGTGCCAGCGGAGGAGGAGGA
GGAGGAGGATCATCTGGCGTTGGAGTGGCCGTCAAGCGGGAACGTGAGGA
GGAGGAGTTTGAGTTTGTGACAAACGCAAGCTTTCTAGACC
BO01035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6474-PA | 837 | e(y)1-RA | 75..830 | 16..771 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(y)1-RA | 1124 | CG6474-RA | 173..932 | 16..775 | 3785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17842474..17843156 | 93..775 | 3400 | 99.9 | Plus |
X | 23542271 | X | 17842333..17842410 | 16..93 | 390 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 1457..1487 | 725..695 | 110 | 83.9 | Minus |
BO01035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:36 Download gff for
BO01035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6474-PA | 70..837 | 11..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:49 Download gff for
BO01035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6474-PA | 70..837 | 11..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:31:43 Download gff for
BO01035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 168..936 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:23 Download gff for
BO01035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 168..936 | 11..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:23 Download gff for
BO01035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17842328..17842409 | 11..92 | 97 | -> | Plus |
X | 17842474..17843160 | 93..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:31:43 Download gff for
BO01035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17736361..17736442 | 11..92 | 97 | -> | Plus |
arm_X | 17736507..17737193 | 93..781 | 99 | | Plus |
BO01035.complete Sequence
793 bp (793 high quality bases) assembled on 2005-06-23
> BO01035.complete
GAAGTTATCAGTCGACATGTCCATCCTGAAGGAGCTGAATGTCCAGGAGT
ACGAGCCGCGCGTGGTCAACCAACTGCTGGAGTTCACCTTCCGCTATGTA
ACCTGCATTCTGGACGACGCCAAGGTGTACGCCAACCATGCGCGCAAGAA
GACCATCGACTTGGACGACGTGCGTCTGGCCACCGAGGTTACGCTGGACA
AGAGCTTCACCGGGCCGTTGGAGCGCCACGTTCTAGCCAAGGTGGCCGAC
GTGCGCAACAGCATGCCCCTGCCACCCATTAAGCCGCACTGCGGTCTCCG
ACTGCCGCCCGACCGCTACTGTCTCACCGGCGTCAACTACAAACTGCGGG
CCACTAATCAGCCCAAGAAAATGACCAAGTCGGCGGTGGAGGGCCGTCCA
CTGAAGACCGTCGTTAAGCCCGTCTCCAGCGCCAATGGTCCGAAGAGGCC
ACACTCCGTGGTGGCCAAGCAGCAGGTGGTGACCATTCCCAAGCCCGTCA
TCAAGTTTACCACCACTACGACAACGAAAACGGTGGGCAGCTCCGGCGGA
TCTGGGGGCGGCGGTGGTCAGGAGGTTAAGAGCGAGAGCACCGGCGCCGG
CGGAGATCTCAAGATGGAGGTGGACAGCGATGCGGCGGCCGTGGGCAGCA
TCGCTGGCGCATCCGGTTCGGGAGCAGGAAGTGCCAGCGGAGGAGGAGGA
GGAGGAGGATCATCTGGCGTTGGAGTGGCCGTCAAGCGGGAACGTGAGGA
GGAGGAGTTTGAGTTTGTGACCAACGCAAGCTTTCTAGACCAT
BO01035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(y)1-RA | 837 | CG6474-PA | 75..834 | 16..775 | 3800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(y)1-RA | 1124 | CG6474-RA | 173..932 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17842474..17843156 | 93..775 | 3415 | 100 | Plus |
X | 23542271 | X | 17842333..17842410 | 16..93 | 390 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 1457..1487 | 725..695 | 110 | 83.9 | Minus |
BO01035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:43 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 70..837 | 11..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:47 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 154..922 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:53 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 174..932 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:44 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 154..922 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:07 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
e(y)1-RA | 174..932 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:07 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17842334..17842409 | 17..92 | 100 | -> | Plus |
X | 17842474..17843156 | 93..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:53 Download gff for
BO01035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17736367..17736442 | 17..92 | 100 | -> | Plus |
arm_X | 17736507..17737189 | 93..777 | 99 | | Plus |
BO01035.pep Sequence
Translation from 16 to 793
> BO01035.pep
MSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLD
DVRLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDR
YCLTGVNYKLRATNQPKKMTKSAVEGRPLKTVVKPVSSANGPKRPHSVVA
KQQVVTIPKPVIKFTTTTTTKTVGSSGGSGGGGGQEVKSESTGAGGDLKM
EVDSDAAAVGSIAGASGSGAGSASGGGGGGGSSGVGVAVKREREEEEFEF
VTNASFLDH
BO01035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
e(y)1-PA | 278 | CG6474-PA | 26..278 | 1..253 | 1293 | 100 | Plus |