Clone Sequence Records
BO01037.3prime Sequence
794 bp (793 high quality bases) assembled on 2005-11-30
> BO01037.3prime
ATGGTCTAGAAAGCTTGCGCTGAAACCCTCGCTCGACTCCTGCTCCATGG
CCTGAAGTTCCTGTTTTTCCATAGCCTCCTGCGCCATTTGCTGCAAGGTA
CGACTGAGTATGTTGCGCAGGATGTGCGGCTTGCAGTGCTCCTCCAGCCA
GGGGATAATGCCGGTGGTCAGCTGCTTAAAGTTCTCCATGGGTATGTGTT
GAAATGTCTCGAACATTTCCTCCATAATTGCCTGGAACACTTGAAACTTG
GCCTCATCGGTGAGGCGTGCCTCCTCCGGCCCTGGATTCGCCTGCTGATG
CTGTAGCATGTTCTCATAGCCGTTCTTAATGATCCGTAACGCTGTTACCT
CCTTCTGTAGCGCCGATCCCTCGTCCTCCTGCTTGAGTTTCTGCTGGTTA
AGGTAGCCAATGTATTCGATGGACTTCTGCAGGATCAGAGCCTTGCTGAG
CTTGTAGCCGGAGGAGTCGTTGGGCTGGCAGCGCGGCACCAGCTCCTGCA
GACTGTCGTAGCCCTTCTTGATGGCATCGCGCCGCTTCTGCTCCGCCTGG
GTGTGCGCCTCCCTTCTCCGCTCCTTGTAACTCAGCGTGGAATTGGCGGC
CGCGGAATGGCGCGCATCGCCGCTATCGTCGTCGTCGTCTGAATTGTGCG
CCGAGGAGTTCGGAGTGTGCGTGCTGCCCGCACTGCTGCACCGCGAGTAG
TGCTTGCTGGTGTGGTCCTGGTCGTGCTCCATGCCGAAAACGTCTTCCTT
GGTGGCCAACGCGTTGTTATTATCGCTCATGTCGACTGATAACT
BO01037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3350-PA | 765 | bigmax-RA | 1..762 | 780..19 | 3710 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 954 | CG3350-RA | 49..819 | 788..19 | 3755 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27287785..27288188 | 238..641 | 1975 | 99.3 | Plus |
3R | 32079331 | 3R | 27287501..27287720 | 19..238 | 1085 | 99.5 | Plus |
3R | 32079331 | 3R | 27288328..27288469 | 639..780 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:58:51 has no hits.
BO01037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:38 Download gff for
BO01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 16..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:54 Download gff for
BO01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 16..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:38 Download gff for
BO01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..819 | 19..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:16 Download gff for
BO01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..819 | 19..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:16 Download gff for
BO01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27287501..27287719 | 19..237 | 99 | <- | Plus |
3R | 27287785..27288185 | 238..638 | 99 | <- | Plus |
3R | 27288328..27288478 | 639..788 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:38 Download gff for
BO01037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23113223..23113441 | 19..237 | 99 | <- | Plus |
arm_3R | 23113507..23113907 | 238..638 | 99 | <- | Plus |
arm_3R | 23114050..23114200 | 639..788 | 98 | | Plus |
BO01037.5prime Sequence
794 bp (705 high quality bases) assembled on 2005-11-29
> BO01037.5prime
GAAGTTATCAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGG
AAGACGTTTTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTAC
TCGCGGTGCAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCA
CAATTCAGACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCG
CCAATTCCACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAG
GCGGAGCAGAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCA
GGAGCTGGTGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCA
GCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAAC
CAGCAGAAACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGT
AACAGCGTTACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATC
AGCAGGCGAATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAG
TTTCAAGTGTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACA
CATACCCATGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGC
TGGAGGAGCACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACC
TTGCAGCAAATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCAT
GGAGCAGGAGTCGAGCGAGGGTTTCAGCGCAAGCTTTCTAGACC
BO01037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3350-PA | 765 | bigmax-RA | 1..762 | 17..778 | 3710 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 954 | CG3350-RA | 49..819 | 9..778 | 3755 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27287785..27288188 | 559..156 | 1975 | 99.3 | Minus |
3R | 32079331 | 3R | 27287501..27287720 | 778..559 | 1085 | 99.5 | Minus |
3R | 32079331 | 3R | 27288328..27288469 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:41:42 has no hits.
BO01037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:39 Download gff for
BO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:55 Download gff for
BO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3350-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:16:52 Download gff for
BO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..819 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:51 Download gff for
BO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 49..819 | 9..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:51 Download gff for
BO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27287501..27287719 | 560..778 | 99 | <- | Minus |
3R | 27287785..27288185 | 159..559 | 99 | <- | Minus |
3R | 27288328..27288478 | 9..158 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:16:52 Download gff for
BO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23113223..23113441 | 560..778 | 99 | <- | Minus |
arm_3R | 23113507..23113907 | 159..559 | 99 | <- | Minus |
arm_3R | 23114050..23114200 | 9..158 | 98 | | Minus |
BO01037.complete Sequence
796 bp (796 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629398
> BO01037.complete
GAAGTTATCAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGG
AAGACGTTTTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTAC
TCGCGGTGCAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCA
CAATTCAGACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCG
CCAATTCCACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAG
GCGGAGCAGAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCA
GGAGCTGGTGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCA
GCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAAC
CAGCAGAAACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGT
AACAGCGTTACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATC
AGCAGGCGAATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAG
TTTCAAGTGTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACA
CATACCCATGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGC
TGGAGGAGCACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACC
TTGCAGCAAATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCAT
GGAGCAGGAGTCGAGCGAGGGTTTCAGCGCAAGCTTTCTAGACCAT
BO01037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 765 | CG3350-PA | 1..762 | 17..778 | 3750 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-RA | 954 | CG3350-RA | 58..819 | 17..778 | 3750 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27287785..27288188 | 559..156 | 1975 | 99.3 | Minus |
3R | 32079331 | 3R | 27287501..27287720 | 778..559 | 1085 | 99.5 | Minus |
3R | 32079331 | 3R | 27288328..27288469 | 158..17 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:10:52 has no hits.
BO01037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:45 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:49 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 18..788 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:22 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 58..819 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:45 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 18..788 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:35 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bigmax-RA | 58..819 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:35 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27287498..27287719 | 560..780 | 98 | <- | Minus |
3R | 27287785..27288185 | 159..559 | 99 | <- | Minus |
3R | 27288328..27288469 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:22 Download gff for
BO01037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23113220..23113441 | 560..780 | 98 | <- | Minus |
arm_3R | 23113507..23113907 | 159..559 | 99 | <- | Minus |
arm_3R | 23114050..23114191 | 17..158 | 100 | | Minus |
BO01037.pep Sequence
Translation from 16 to 796
> BO01037.pep
MSDNNNALATKEDVFGMEHDQDHTSKHYSRCSSAGSTHTPNSSAHNSDDD
DDSGDARHSAAANSTLSYKERRREAHTQAEQKRRDAIKKGYDSLQELVPR
CQPNDSSGYKLSKALILQKSIEYIGYLNQQKLKQEDEGSALQKEVTALRI
IKNGYENMLQHQQANPGPEEARLTDEAKFQVFQAIMEEMFETFQHIPMEN
FKQLTTGIIPWLEEHCKPHILRNILSRTLQQMAQEAMEKQELQAMEQESS
EGFSASFLDH
BO01037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bigmax-PA | 254 | CG3350-PA | 1..254 | 1..254 | 1318 | 100 | Plus |
Mio-PE | 925 | CG18362-PE | 690..891 | 39..233 | 173 | 26.9 | Plus |
Mio-PM | 1119 | CG18362-PM | 884..1085 | 39..233 | 173 | 26.9 | Plus |
Mio-PL | 1119 | CG18362-PL | 884..1085 | 39..233 | 173 | 26.9 | Plus |
Mio-PK | 1119 | CG18362-PK | 884..1085 | 39..233 | 173 | 26.9 | Plus |