Clone Sequence Records
BO01040.3prime Sequence
803 bp (802 high quality bases) assembled on 2005-11-30
> BO01040.3prime
ATGGTCTAGAAAGCTTGCTGCGTAGTGGGGATAGCTGCTCAGGTGGGGCG
CTACGTGGGAGGGGGTCACGTGGCTCATCGAGTGCGGCTGGTAGAGATTC
GTGGCCGGACTGCCCCAGTTGCCCCACGAGGCGGCCGACGGGAAGATCGA
GGCCGAGGATGAGGTCATGCCATGATGCGGACTCATGAACGAGCTGAGCT
TGGCGCTGTGGTGATATGGTGTCATGAACAAGTCGCTCTGGTATTTGTAG
GTGGGATCGCTGGCCGCCGGCTGAGTAGCAGCTGCCAGGCCTTGGAAATC
GAATTTGTACGCATACCGCTTGCCGTGCACCTTGGTCATTATATTTTTGT
CGTAGTAGTACCTCAAGGCGCGACTGAGCTTATCGTAGTTCATGTTGGGC
TTGGACTTCCTCTCGCCCCAGCGGCGGGCGACCTCGTCGGGATCGGTTAG
CTTAAACTCGCCGTTGGTGCCCTCCCAGGTGATGCAGCTGGCGTTATTGG
AGTCCGAGAGCAGCTCGAGAAGGAACTGCCACAGCTGGATTTGGCCAGAG
CCTGAGCTGGCCAGTCTGCTGCTGGTGGGTCCGAACATTTGATATGGATC
AGGTTGCCGTAGTTGTGAGTGCGGATCATGTTTGATGCCCAGGGCGTTCG
AGCTGTAACCTTGCGATTGTGTCGAACTGTGGGAGCCCCACGACGATTTG
TACGAGGAATCTGCGAAGAGCATCGAGAAGTTGCTGAAGCTGCCCGTGGA
GCGTGACAAGTAATCGGCGGAGGACTTGATGTCCAGCATGTCGACTGATA
ACT
BO01040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7018-PB | 774 | Ets65A-RB | 1..771 | 789..19 | 3855 | 100 | Minus |
| CG7018-PA | 1473 | Ets65A-RA | 779..1470 | 710..19 | 3460 | 100 | Minus |
| CG2914-PA | 1428 | Ets21C-RA | 940..998 | 363..305 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ets65A-RB | 2177 | CG7018-RB | 654..1424 | 789..19 | 3855 | 100 | Minus |
| Ets65A-RE | 4190 | CG7018-RE | 1695..2386 | 710..19 | 3460 | 100 | Minus |
| Ets65A-RD | 4190 | CG7018-RD | 1695..2386 | 710..19 | 3460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6121492..6121702 | 363..153 | 1055 | 100 | Minus |
| 3L | 28110227 | 3L | 6118956..6119150 | 554..360 | 975 | 100 | Minus |
| 3L | 28110227 | 3L | 6121975..6122109 | 153..19 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 6112120..6112198 | 789..711 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 6114292..6114353 | 661..600 | 310 | 100 | Minus |
| 3L | 28110227 | 3L | 6112368..6112423 | 713..658 | 280 | 100 | Minus |
| 2L | 23513712 | 2L | 547993..548162 | 377..546 | 280 | 77.6 | Plus |
| 3L | 28110227 | 3L | 6115954..6116003 | 600..551 | 250 | 100 | Minus |
| 2L | 23513712 | 2L | 547825..547902 | 286..363 | 240 | 87.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:12:03 has no hits.
BO01040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:42 Download gff for
BO01040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7018-PB | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:00 Download gff for
BO01040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7018-PB | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:49 Download gff for
BO01040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 654..1424 | 19..789 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:41 Download gff for
BO01040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 654..1424 | 19..789 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:41 Download gff for
BO01040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6115955..6116002 | 552..599 | 100 | -> | Minus |
| 3L | 6118959..6119148 | 362..551 | 100 | -> | Minus |
| 3L | 6112120..6112198 | 711..789 | 100 | -> | Minus |
| 3L | 6112371..6112421 | 660..710 | 100 | -> | Minus |
| 3L | 6114294..6114353 | 600..659 | 100 | -> | Minus |
| 3L | 6121494..6121702 | 153..361 | 100 | -> | Minus |
| 3L | 6121976..6122109 | 19..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:49 Download gff for
BO01040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6105220..6105298 | 711..789 | 100 | -> | Minus |
| arm_3L | 6105471..6105521 | 660..710 | 100 | -> | Minus |
| arm_3L | 6107394..6107453 | 600..659 | 100 | -> | Minus |
| arm_3L | 6109055..6109102 | 552..599 | 100 | -> | Minus |
| arm_3L | 6112059..6112248 | 362..551 | 100 | -> | Minus |
| arm_3L | 6114594..6114802 | 153..361 | 100 | -> | Minus |
| arm_3L | 6115076..6115209 | 19..152 | 100 | | Minus |
BO01040.5prime Sequence
803 bp (678 high quality bases) assembled on 2005-11-29
> BO01040.5prime
GAAGTTATCAGTCGACATGCTGGACATCAAGTCCTCCGCCGATTACTTGT
CACGCTCCACGGGCAGCTTCAGCAACTTCTCGATGCTCTTCGCAGATTCC
TCGTACAAATCGTCGTGGGGCTCCCACAGTTCGACACAATCGCAAGGTTA
CAGCTCGAACGCCCTGGGCATCAAACATGATCCGCACTCACAACTACGGC
AACCTGATCCATATCAAATGTTCGGACCCACCAGCAGCAGACTGGCCAGC
TCAGGCTCTGGCCAAATCCAGCTGTGGCAGTTCCTTCTCGAGCTGCTCTC
GGACTCCAATAACGCCAGCTGCATCACCTGGGAGGGCACCAACGGCGAGT
TTAAGCTAACCGATCCCGACGAGGTCGCCCGCCGCTGGGGCGAGAGGAAG
TCCAAGCCCAACATGAACTACGATAAGCTCAGTCGCGCCTTGAGGTACTA
CTACGACAAAAATATAATGACCAAGGTGCACGGCAAGCGGTATGCGTACA
AATTCGATTTCCAAGGCCTGGCAGCTGCTACTCAGCCGGCGGCCAGCGAT
CCCACCTACAAATACCAGAGCGACTTGTTCATGACACCATATCACCACAG
CGCCAAGCTCAGCTCGTTCATGAGTCCGCATCATGGCATGACCTCATCCT
CGGCCTCGATCTTCCCGTCGGCCGCCTCGTGGGGCAACTGGGGCAGTCCG
GCCACGAATCTCTACCAGCCGCACTCGATGAGCCACGTGACCTCCTCCCA
CGTAGCGCCCCACCTGAGCAGCTATCCCCACTACGCAGCAAGCTTTCTAG
ACC
BO01040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7018-PB | 774 | Ets65A-RB | 1..771 | 17..787 | 3830 | 99.8 | Plus |
| CG7018-PA | 1473 | Ets65A-RA | 779..1470 | 96..787 | 3435 | 99.8 | Plus |
| CG2914-PA | 1428 | Ets21C-RA | 940..998 | 443..501 | 170 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ets65A-RB | 2177 | CG7018-RB | 654..1424 | 17..787 | 3840 | 99.9 | Plus |
| Ets65A-RE | 4190 | CG7018-RE | 1695..2386 | 96..787 | 3445 | 99.9 | Plus |
| Ets65A-RD | 4190 | CG7018-RD | 1695..2386 | 96..787 | 3445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6121492..6121702 | 443..653 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 6118956..6119150 | 252..446 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 6121975..6122109 | 653..787 | 660 | 99.3 | Plus |
| 3L | 28110227 | 3L | 6112120..6112198 | 17..95 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 6114292..6114353 | 145..206 | 310 | 100 | Plus |
| 3L | 28110227 | 3L | 6112368..6112423 | 93..148 | 280 | 100 | Plus |
| 2L | 23513712 | 2L | 547993..548162 | 429..260 | 280 | 77.6 | Minus |
| 3L | 28110227 | 3L | 6115954..6116003 | 206..255 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 547825..547902 | 520..443 | 240 | 87.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:41 has no hits.
BO01040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:43 Download gff for
BO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7018-PB | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:02 Download gff for
BO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7018-PB | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:02 Download gff for
BO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 654..1424 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:44 Download gff for
BO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 654..1424 | 17..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:44 Download gff for
BO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6112120..6112198 | 17..95 | 100 | -> | Plus |
| 3L | 6112371..6112421 | 96..146 | 100 | -> | Plus |
| 3L | 6114294..6114353 | 147..206 | 100 | -> | Plus |
| 3L | 6115955..6116002 | 207..254 | 100 | -> | Plus |
| 3L | 6118959..6119148 | 255..444 | 100 | -> | Plus |
| 3L | 6121494..6121702 | 445..653 | 100 | -> | Plus |
| 3L | 6121976..6122109 | 654..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:02 Download gff for
BO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6105220..6105298 | 17..95 | 100 | -> | Plus |
| arm_3L | 6105471..6105521 | 96..146 | 100 | -> | Plus |
| arm_3L | 6107394..6107453 | 147..206 | 100 | -> | Plus |
| arm_3L | 6109055..6109102 | 207..254 | 100 | -> | Plus |
| arm_3L | 6112059..6112248 | 255..444 | 100 | -> | Plus |
| arm_3L | 6114594..6114802 | 445..653 | 100 | -> | Plus |
| arm_3L | 6115076..6115209 | 654..787 | 99 | | Plus |
BO01040.complete Sequence
805 bp (805 high quality bases) assembled on 2005-06-23
GenBank Submission: KX796878
> BO01040.complete
GAAGTTATCAGTCGACATGCTGGACATCAAGTCCTCCGCCGATTACTTGT
CACGCTCCACGGGCAGCTTCAGCAACTTCTCGATGCTCTTCGCAGATTCC
TCGTACAAATCGTCGTGGGGCTCCCACAGTTCGACACAATCGCAAGGTTA
CAGCTCGAACGCCCTGGGCATCAAACATGATCCGCACTCACAACTACGGC
AACCTGATCCATATCAAATGTTCGGACCCACCAGCAGCAGACTGGCCAGC
TCAGGCTCTGGCCAAATCCAGCTGTGGCAGTTCCTTCTCGAGCTGCTCTC
GGACTCCAATAACGCCAGCTGCATCACCTGGGAGGGCACCAACGGCGAGT
TTAAGCTAACCGATCCCGACGAGGTCGCCCGCCGCTGGGGCGAGAGGAAG
TCCAAGCCCAACATGAACTACGATAAGCTCAGTCGCGCCTTGAGGTACTA
CTACGACAAAAATATAATGACCAAGGTGCACGGCAAGCGGTATGCGTACA
AATTCGATTTCCAAGGCCTGGCAGCTGCTACTCAGCCGGCGGCCAGCGAT
CCCACCTACAAATACCAGAGCGACTTGTTCATGACACCATATCACCACAG
CGCCAAGCTCAGCTCGTTCATGAGTCCGCATCATGGCATGACCTCATCCT
CGGCCTCGATCTTCCCGTCGGCCGCCTCGTGGGGCAACTGGGGCAGTCCG
GCCACGAATCTCTACCAGCCGCACTCGATGAGCCACGTGACCCCCTCCCA
CGTAGCGCCCCACCTGAGCAGCTATCCCCACTACGCAGCAAGCTTTCTAG
ACCAT
BO01040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ets65A-RB | 774 | CG7018-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
| Ets65A-RE | 2187 | CG7018-PE | 779..1470 | 96..787 | 3460 | 100 | Plus |
| Ets65A-RD | 1974 | CG7018-PD | 779..1470 | 96..787 | 3460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ets65A-RB | 2177 | CG7018-RB | 654..1424 | 17..787 | 3855 | 100 | Plus |
| Ets65A-RE | 4190 | CG7018-RE | 1695..2386 | 96..787 | 3460 | 100 | Plus |
| Ets65A-RD | 4190 | CG7018-RD | 1695..2386 | 96..787 | 3460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6121492..6121702 | 443..653 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 6118956..6119150 | 252..446 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 6121975..6122109 | 653..787 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 6112120..6112198 | 17..95 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 6114292..6114353 | 145..206 | 310 | 100 | Plus |
| 3L | 28110227 | 3L | 6112368..6112423 | 93..148 | 280 | 100 | Plus |
| 2L | 23513712 | 2L | 547993..548162 | 429..260 | 280 | 77.6 | Minus |
| 3L | 28110227 | 3L | 6115954..6116003 | 206..255 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 547825..547902 | 520..443 | 240 | 87.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:09:00 has no hits.
BO01040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:46 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:50 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 906..1676 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:11 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 654..1424 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:46 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 906..1676 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:58 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ets65A-RB | 654..1424 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:58 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6112120..6112198 | 17..95 | 100 | -> | Plus |
| 3L | 6112371..6112421 | 96..146 | 100 | -> | Plus |
| 3L | 6114294..6114353 | 147..206 | 100 | -> | Plus |
| 3L | 6115955..6116002 | 207..254 | 100 | -> | Plus |
| 3L | 6118959..6119148 | 255..444 | 100 | -> | Plus |
| 3L | 6121494..6121702 | 445..653 | 100 | -> | Plus |
| 3L | 6121976..6122109 | 654..789 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:11 Download gff for
BO01040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6105220..6105298 | 17..95 | 100 | -> | Plus |
| arm_3L | 6105471..6105521 | 96..146 | 100 | -> | Plus |
| arm_3L | 6107394..6107453 | 147..206 | 100 | -> | Plus |
| arm_3L | 6109055..6109102 | 207..254 | 100 | -> | Plus |
| arm_3L | 6112059..6112248 | 255..444 | 100 | -> | Plus |
| arm_3L | 6114594..6114802 | 445..653 | 100 | -> | Plus |
| arm_3L | 6115076..6115209 | 654..789 | 98 | | Plus |
BO01040.pep Sequence
Translation from 16 to 805
> BO01040.pep
MLDIKSSADYLSRSTGSFSNFSMLFADSSYKSSWGSHSSTQSQGYSSNAL
GIKHDPHSQLRQPDPYQMFGPTSSRLASSGSGQIQLWQFLLELLSDSNNA
SCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNI
MTKVHGKRYAYKFDFQGLAAATQPAASDPTYKYQSDLFMTPYHHSAKLSS
FMSPHHGMTSSSASIFPSAASWGNWGSPATNLYQPHSMSHVTPSHVAPHL
SSYPHYAASFLDH
BO01040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ets65A-PB | 257 | CG7018-PB | 1..257 | 1..257 | 1382 | 100 | Plus |
| Ets65A-PA | 490 | CG7018-PA | 261..490 | 28..257 | 1250 | 100 | Plus |
| Ets65A-PC | 512 | CG7018-PC | 283..512 | 28..257 | 1250 | 100 | Plus |
| Ets65A-PD | 657 | CG7018-PD | 261..490 | 28..257 | 1250 | 100 | Plus |
| Ets65A-PE | 728 | CG7018-PE | 261..490 | 28..257 | 1250 | 100 | Plus |
